Wall clock time and date at job start Tue Mar 31 2020 22:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 5 5 N 1.46499 * 109.47378 * 174.99686 * 4 2 1 6 6 C 1.46501 * 119.99989 * 89.99592 * 5 4 2 7 7 C 1.34767 * 120.00071 * 270.00041 * 5 4 2 8 8 O 1.21280 * 120.00186 * 359.97438 * 7 5 4 9 9 C 1.50706 * 120.00007 * 179.97438 * 7 5 4 10 10 C 1.53006 * 109.47047 * 179.97438 * 9 7 5 11 11 N 1.46498 * 109.46917 * 179.97438 * 10 9 7 12 12 C 1.34602 * 126.43505 * 125.00033 * 11 10 9 13 13 N 1.31072 * 106.67662 * 180.02562 * 12 11 10 14 14 N 1.28838 * 107.99515 * 0.02562 * 13 12 11 15 15 N 1.28751 * 109.39519 * 359.73306 * 14 13 12 16 16 N 1.46906 * 109.46889 * 240.00359 * 2 1 3 17 17 C 1.46898 * 110.99888 * 85.00162 * 16 2 1 18 18 C 1.50705 * 109.46661 * 180.02562 * 17 16 2 19 19 O 1.21288 * 120.00125 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99549 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00062 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99229 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00207 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99885 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00123 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46979 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47480 * 120.00092 * 25 23 21 28 28 H 1.48497 * 109.47080 * 240.00247 * 25 23 21 29 29 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 31 31 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 32 32 H 1.09004 * 109.46848 * 294.99959 * 4 2 1 33 33 H 1.08999 * 109.47502 * 54.99555 * 4 2 1 34 34 H 1.08997 * 109.47401 * 89.99845 * 6 5 4 35 35 H 1.08996 * 109.47206 * 210.00621 * 6 5 4 36 36 H 1.09005 * 109.47164 * 330.00577 * 6 5 4 37 37 H 1.09002 * 109.46748 * 299.99812 * 9 7 5 38 38 H 1.08997 * 109.46958 * 59.99457 * 9 7 5 39 39 H 1.08995 * 109.46719 * 299.99776 * 10 9 7 40 40 H 1.08996 * 109.46788 * 60.00055 * 10 9 7 41 41 H 1.07993 * 126.66042 * 0.03492 * 12 11 10 42 42 H 1.00902 * 110.99923 * 208.96103 * 16 2 1 43 43 H 1.08995 * 109.47296 * 299.99911 * 17 16 2 44 44 H 1.08997 * 109.47334 * 60.00212 * 17 16 2 45 45 H 0.97003 * 120.00664 * 0.02562 * 20 18 17 46 46 H 0.97010 * 119.99812 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.8266 1.1905 6 6 4.3343 0.2338 1.7612 7 6 4.0756 -1.8988 0.6114 8 8 3.3849 -2.7768 0.1393 9 6 5.5775 -2.0067 0.5506 10 6 5.9672 -3.3091 -0.1516 11 7 7.4272 -3.4138 -0.2112 12 6 8.1747 -4.4365 0.2439 13 7 9.4243 -4.1292 -0.0054 14 7 9.4434 -2.9777 -0.5830 15 7 8.2379 -2.5448 -0.7137 16 7 2.0196 -0.6925 -1.1995 17 6 2.0824 0.2227 -2.3469 18 6 2.5872 -0.5217 -3.5561 19 8 2.8675 -1.6986 -3.4703 20 7 2.7271 0.1204 -4.7327 21 6 3.1869 -0.5566 -5.8327 22 1 3.4365 -1.6046 -5.7563 23 6 3.3306 0.1052 -7.0459 24 7 3.0264 1.3802 -7.1389 25 14 3.9564 -0.8175 -8.5448 26 1 4.2263 -2.2311 -8.1789 27 1 2.9316 -0.7706 -9.6185 28 1 5.2094 -0.1841 -9.0285 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.7516 -0.1585 2.1369 33 1 1.6053 -1.7199 1.2950 34 1 4.5424 0.0090 2.8073 35 1 5.2721 0.2950 1.2091 36 1 3.8090 1.1864 1.6919 37 1 5.9804 -1.1596 -0.0046 38 1 5.9832 -2.0042 1.5622 39 1 5.5643 -4.1559 0.4040 40 1 5.5614 -3.3120 -1.1632 41 1 7.8147 -5.3356 0.7215 42 1 2.9172 -1.1206 -1.0288 43 1 1.0870 0.6165 -2.5525 44 1 2.7588 1.0462 -2.1182 45 1 2.5033 1.0618 -4.8013 46 1 3.1264 1.8422 -7.9861 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571410117.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:56 Heat of formation + Delta-G solvation = 61.874811 kcal Electronic energy + Delta-G solvation = -30017.730601 eV Core-core repulsion = 25788.089411 eV Total energy + Delta-G solvation = -4229.641190 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.31761 -40.59476 -38.28559 -37.05421 -36.10212 -35.14935 -33.85795 -32.69010 -31.93418 -31.25640 -30.79246 -27.84603 -26.94462 -26.37432 -25.12003 -23.97958 -23.92456 -22.55384 -20.58458 -19.58288 -19.17064 -18.31312 -17.87232 -17.30777 -16.89148 -16.78302 -16.44475 -15.98214 -15.73260 -15.29608 -15.02990 -14.48346 -14.40478 -14.03086 -13.83258 -13.47398 -13.45853 -13.25204 -13.01233 -12.79704 -12.70316 -12.49686 -12.32066 -12.11752 -11.89925 -11.85185 -11.63045 -11.58511 -11.37969 -11.32699 -11.11162 -11.03694 -10.91248 -10.50470 -10.32406 -10.20280 -10.09817 -9.49169 -8.99116 -8.38826 -7.99917 -7.92312 -6.39541 -3.80004 1.08808 1.71791 2.10330 2.29360 2.65166 3.18361 3.28800 3.36161 3.91675 3.93681 3.98283 4.09901 4.13869 4.23680 4.35096 4.54098 4.67849 4.75058 4.79740 4.97882 5.00140 5.08596 5.17070 5.23840 5.25740 5.27684 5.28465 5.33951 5.39248 5.56075 5.66336 5.70576 5.79403 5.93824 5.98053 6.00002 6.08922 6.28043 6.36915 6.94286 7.30122 7.57629 7.72587 7.87213 8.09285 8.44961 8.64198 9.20777 9.57038 10.08914 10.78391 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.007050 B = 0.003870 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3970.698041 B = 7233.700809 C =10490.594381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.066 3.934 3 H 0.040 0.960 4 C 0.113 3.887 5 N -0.621 5.621 6 C 0.073 3.927 7 C 0.512 3.488 8 O -0.502 6.502 9 C -0.155 4.155 10 C 0.126 3.874 11 N -0.305 5.305 12 C 0.159 3.841 13 N -0.311 5.311 14 N -0.079 5.079 15 N -0.087 5.087 16 N -0.657 5.657 17 C 0.049 3.951 18 C 0.440 3.560 19 O -0.578 6.578 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.281 1.281 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.234 0.766 42 H 0.351 0.649 43 H 0.084 0.916 44 H 0.037 0.963 45 H 0.391 0.609 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.837 -1.971 22.956 23.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.046 4.046 3 H 0.058 0.942 4 C -0.010 4.010 5 N -0.356 5.356 6 C -0.070 4.070 7 C 0.299 3.701 8 O -0.375 6.375 9 C -0.195 4.195 10 C 0.005 3.995 11 N -0.107 5.107 12 C -0.140 4.140 13 N -0.159 5.159 14 N -0.073 5.073 15 N -0.073 5.073 16 N -0.295 5.295 17 C -0.084 4.084 18 C 0.226 3.774 19 O -0.461 6.461 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.755 3.245 26 H -0.193 1.193 27 H -0.207 1.207 28 H -0.207 1.207 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.132 0.868 38 H 0.120 0.880 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.251 0.749 42 H 0.175 0.825 43 H 0.103 0.897 44 H 0.055 0.945 45 H 0.224 0.776 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.115 -2.575 21.936 22.115 hybrid contribution 0.020 0.489 -0.325 0.588 sum 1.136 -2.086 21.611 21.741 Atomic orbital electron populations 1.21745 0.93937 1.02755 1.01221 1.21938 0.96514 0.95726 0.90411 0.94203 1.21799 0.78467 1.03221 0.97465 1.47873 1.07297 1.21365 1.59112 1.21887 0.95717 0.90819 0.98572 1.20185 0.89640 0.82131 0.78121 1.90886 1.64256 1.38489 1.43917 1.21917 0.94439 0.99644 1.03540 1.22082 0.70796 1.00125 1.06473 1.48816 1.10893 1.13421 1.37592 1.27750 0.87424 0.97066 1.01768 1.74992 1.17378 1.08535 1.15030 1.78670 1.11264 1.04113 1.13248 1.78951 0.96321 1.16421 1.15615 1.60192 1.35875 1.31237 1.02220 1.21741 1.01024 0.93854 0.91765 1.19818 0.84940 0.88259 0.84419 1.90536 1.54938 1.15977 1.84682 1.41872 1.57974 1.12378 1.07978 1.19739 1.39721 0.96423 0.86784 0.87950 1.25239 0.97711 0.95772 0.99189 1.69622 1.48893 1.08873 1.27020 0.85823 0.78246 0.79657 0.80774 1.19255 1.20731 1.20746 0.91607 0.92854 0.92216 0.89806 0.88623 0.92195 0.90762 0.90612 0.86799 0.87994 0.85798 0.85668 0.74945 0.82524 0.89746 0.94511 0.77567 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.41 37.16 0.35 -1.14 16 2 C 0.07 0.78 2.95 -67.71 -0.20 0.58 16 3 H 0.04 0.44 7.80 -51.93 -0.40 0.04 16 4 C 0.11 1.07 5.20 -4.04 -0.02 1.05 16 5 N -0.62 -5.61 2.66 -181.57 -0.48 -6.09 16 6 C 0.07 0.41 10.24 59.85 0.61 1.03 16 7 C 0.51 5.59 6.04 -10.99 -0.07 5.52 16 8 O -0.50 -7.48 14.15 5.56 0.08 -7.40 16 9 C -0.15 -1.27 4.40 -27.88 -0.12 -1.39 16 10 C 0.13 1.11 5.77 -4.04 -0.02 1.09 16 11 N -0.31 -3.14 3.44 -62.56 -0.22 -3.36 16 12 C 0.16 1.40 12.79 -90.39 -1.16 0.24 16 13 N -0.31 -4.00 12.36 29.59 0.37 -3.64 16 14 N -0.08 -1.18 13.43 60.35 0.81 -0.37 16 15 N -0.09 -1.20 13.08 60.35 0.79 -0.41 16 16 N -0.66 -11.09 5.82 -107.99 -0.63 -11.72 16 17 C 0.05 0.90 5.97 -4.97 -0.03 0.87 16 18 C 0.44 10.70 7.82 -10.98 -0.09 10.61 16 19 O -0.58 -16.10 15.78 5.55 0.09 -16.01 16 20 N -0.57 -14.62 5.29 -10.96 -0.06 -14.68 16 21 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 22 H 0.10 3.07 7.16 -52.48 -0.38 2.70 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.90 13.05 55.50 0.72 -24.18 16 25 Si 0.93 21.54 29.55 -169.99 -5.02 16.51 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 32 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 33 H 0.10 1.06 7.42 -51.93 -0.39 0.68 16 34 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.07 0.40 6.44 -51.93 -0.33 0.07 16 36 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 37 H 0.11 1.02 7.40 -51.93 -0.38 0.64 16 38 H 0.10 0.57 8.11 -51.93 -0.42 0.15 16 39 H 0.12 0.73 8.04 -51.93 -0.42 0.32 16 40 H 0.13 1.45 8.10 -51.93 -0.42 1.03 16 41 H 0.23 0.76 8.06 -52.49 -0.42 0.33 16 42 H 0.35 6.23 4.17 -39.29 -0.16 6.06 16 43 H 0.08 1.44 7.44 -51.93 -0.39 1.05 16 44 H 0.04 0.61 8.05 -51.93 -0.42 0.20 16 45 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 46 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 LS Contribution 388.10 15.07 5.85 5.85 Total: -1.00 -37.96 388.10 -5.17 -43.13 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -6.49 Total: 11.98 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: -0.98 Total: 10.37 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: 1.30 Total: -64.44 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: 0.17 Total: -23.41 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.96 -5.17 -43.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571410117.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.006 kcal (2) G-P(sol) polarization free energy of solvation -37.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds