Wall clock time and date at job start Tue Mar 31 2020 22:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 5 5 N 1.46499 * 109.47378 * 174.99686 * 4 2 1 6 6 C 1.46501 * 119.99989 * 89.99592 * 5 4 2 7 7 C 1.34767 * 120.00071 * 270.00041 * 5 4 2 8 8 O 1.21280 * 120.00186 * 359.97438 * 7 5 4 9 9 C 1.50706 * 120.00007 * 179.97438 * 7 5 4 10 10 C 1.53006 * 109.47047 * 179.97438 * 9 7 5 11 11 N 1.46498 * 109.46917 * 179.97438 * 10 9 7 12 12 C 1.34602 * 126.43505 * 125.00033 * 11 10 9 13 13 N 1.31072 * 106.67662 * 180.02562 * 12 11 10 14 14 N 1.28838 * 107.99515 * 0.02562 * 13 12 11 15 15 N 1.28751 * 109.39519 * 359.73306 * 14 13 12 16 16 N 1.46906 * 109.46889 * 240.00359 * 2 1 3 17 17 C 1.46898 * 110.99888 * 85.00162 * 16 2 1 18 18 C 1.50705 * 109.46661 * 180.02562 * 17 16 2 19 19 O 1.21288 * 120.00125 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99549 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00062 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99229 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00207 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99885 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00123 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46979 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47480 * 120.00092 * 25 23 21 28 28 H 1.48497 * 109.47080 * 240.00247 * 25 23 21 29 29 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 31 31 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 32 32 H 1.09004 * 109.46848 * 294.99959 * 4 2 1 33 33 H 1.08999 * 109.47502 * 54.99555 * 4 2 1 34 34 H 1.08997 * 109.47401 * 89.99845 * 6 5 4 35 35 H 1.08996 * 109.47206 * 210.00621 * 6 5 4 36 36 H 1.09005 * 109.47164 * 330.00577 * 6 5 4 37 37 H 1.09002 * 109.46748 * 299.99812 * 9 7 5 38 38 H 1.08997 * 109.46958 * 59.99457 * 9 7 5 39 39 H 1.08995 * 109.46719 * 299.99776 * 10 9 7 40 40 H 1.08996 * 109.46788 * 60.00055 * 10 9 7 41 41 H 1.07993 * 126.66042 * 0.03492 * 12 11 10 42 42 H 1.00902 * 110.99923 * 208.96103 * 16 2 1 43 43 H 1.08995 * 109.47296 * 299.99911 * 17 16 2 44 44 H 1.08997 * 109.47334 * 60.00212 * 17 16 2 45 45 H 0.97003 * 120.00664 * 0.02562 * 20 18 17 46 46 H 0.97010 * 119.99812 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.8266 1.1905 6 6 4.3343 0.2338 1.7612 7 6 4.0756 -1.8988 0.6114 8 8 3.3849 -2.7768 0.1393 9 6 5.5775 -2.0067 0.5506 10 6 5.9672 -3.3091 -0.1516 11 7 7.4272 -3.4138 -0.2112 12 6 8.1747 -4.4365 0.2439 13 7 9.4243 -4.1292 -0.0054 14 7 9.4434 -2.9777 -0.5830 15 7 8.2379 -2.5448 -0.7137 16 7 2.0196 -0.6925 -1.1995 17 6 2.0824 0.2227 -2.3469 18 6 2.5872 -0.5217 -3.5561 19 8 2.8675 -1.6986 -3.4703 20 7 2.7271 0.1204 -4.7327 21 6 3.1869 -0.5566 -5.8327 22 1 3.4365 -1.6046 -5.7563 23 6 3.3306 0.1052 -7.0459 24 7 3.0264 1.3802 -7.1389 25 14 3.9564 -0.8175 -8.5448 26 1 4.2263 -2.2311 -8.1789 27 1 2.9316 -0.7706 -9.6185 28 1 5.2094 -0.1841 -9.0285 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.7516 -0.1585 2.1369 33 1 1.6053 -1.7199 1.2950 34 1 4.5424 0.0090 2.8073 35 1 5.2721 0.2950 1.2091 36 1 3.8090 1.1864 1.6919 37 1 5.9804 -1.1596 -0.0046 38 1 5.9832 -2.0042 1.5622 39 1 5.5643 -4.1559 0.4040 40 1 5.5614 -3.3120 -1.1632 41 1 7.8147 -5.3356 0.7215 42 1 2.9172 -1.1206 -1.0288 43 1 1.0870 0.6165 -2.5525 44 1 2.7588 1.0462 -2.1182 45 1 2.5033 1.0618 -4.8013 46 1 3.1264 1.8422 -7.9861 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571410117.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:55 Heat of formation + Delta-G solvation = 31.924722 kcal Electronic energy + Delta-G solvation = -30019.029334 eV Core-core repulsion = 25788.089411 eV Total energy + Delta-G solvation = -4230.939924 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.20787 -41.42503 -40.12354 -38.08954 -36.98909 -36.21965 -35.79292 -33.58719 -33.32921 -32.79292 -31.92323 -28.52905 -28.05605 -27.62970 -26.08739 -25.58547 -24.81400 -23.40462 -21.53601 -21.17401 -20.24019 -19.92698 -19.06911 -18.21018 -17.99021 -17.63181 -17.48305 -16.99765 -16.76553 -16.54304 -16.46254 -16.12723 -15.57529 -15.52293 -14.95970 -14.71475 -14.29589 -14.22232 -14.02714 -13.80170 -13.61841 -13.49675 -13.37776 -13.30563 -13.21620 -12.97013 -12.91200 -12.62858 -12.57654 -12.44693 -12.34804 -12.23116 -12.14919 -11.96010 -11.89840 -11.54148 -11.40052 -10.96038 -10.35916 -10.03862 -9.70637 -9.26507 -8.49859 -5.98272 0.25104 0.95566 1.19883 1.33016 1.38212 1.49591 1.52139 1.97652 2.01906 2.26149 2.93368 3.17196 3.20876 3.37312 3.47933 3.50119 3.58132 3.82002 3.92375 4.13824 4.19434 4.24847 4.26800 4.31362 4.40107 4.42852 4.46317 4.52383 4.55977 4.59119 4.67634 4.77468 4.89200 4.93084 4.95426 5.08739 5.20819 5.35623 5.38054 5.53366 5.90153 6.14452 6.24796 6.50174 6.57611 7.06220 7.10066 7.52979 7.53410 8.09074 8.67886 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.007050 B = 0.003870 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3970.698041 B = 7233.700809 C =10490.594381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.062 3.938 3 H 0.056 0.944 4 C 0.116 3.884 5 N -0.618 5.618 6 C 0.067 3.933 7 C 0.507 3.493 8 O -0.551 6.551 9 C -0.145 4.145 10 C 0.129 3.871 11 N -0.302 5.302 12 C 0.183 3.817 13 N -0.342 5.342 14 N -0.111 5.111 15 N -0.116 5.116 16 N -0.679 5.679 17 C 0.064 3.936 18 C 0.435 3.565 19 O -0.619 6.619 20 N -0.573 5.573 21 C -0.333 4.333 22 H 0.075 0.925 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.990 3.010 26 H -0.276 1.276 27 H -0.268 1.268 28 H -0.270 1.270 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.125 0.875 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.135 0.865 39 H 0.158 0.842 40 H 0.090 0.910 41 H 0.290 0.710 42 H 0.344 0.656 43 H 0.100 0.900 44 H 0.059 0.941 45 H 0.396 0.604 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.432 -1.254 24.996 25.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.048 4.048 3 H 0.074 0.926 4 C -0.007 4.007 5 N -0.352 5.352 6 C -0.075 4.075 7 C 0.295 3.705 8 O -0.428 6.428 9 C -0.185 4.185 10 C 0.008 3.992 11 N -0.104 5.104 12 C -0.115 4.115 13 N -0.190 5.190 14 N -0.106 5.106 15 N -0.103 5.103 16 N -0.318 5.318 17 C -0.069 4.069 18 C 0.223 3.777 19 O -0.505 6.505 20 N -0.210 5.210 21 C -0.462 4.462 22 H 0.093 0.907 23 C -0.210 4.210 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.201 1.201 27 H -0.193 1.193 28 H -0.195 1.195 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.143 0.857 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.122 0.878 38 H 0.153 0.847 39 H 0.176 0.824 40 H 0.108 0.892 41 H 0.305 0.695 42 H 0.167 0.833 43 H 0.118 0.882 44 H 0.077 0.923 45 H 0.229 0.771 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.699 -1.786 24.008 24.084 hybrid contribution 0.072 0.253 -0.884 0.923 sum 0.771 -1.533 23.124 23.187 Atomic orbital electron populations 1.21737 0.93165 1.02054 1.02364 1.22142 0.97087 0.96325 0.89286 0.92579 1.21812 0.78663 1.02463 0.97743 1.47986 1.07552 1.21432 1.58212 1.22145 0.95334 0.90247 0.99779 1.20589 0.90407 0.82035 0.77436 1.90864 1.65403 1.40449 1.46112 1.21859 0.92749 0.98810 1.05122 1.22147 0.69835 1.02090 1.05119 1.48896 1.11085 1.13310 1.37120 1.28737 0.86008 0.97377 0.99343 1.74916 1.19663 1.08317 1.16147 1.78640 1.12011 1.05372 1.14538 1.78892 0.96586 1.17949 1.16843 1.60211 1.35773 1.32035 1.03744 1.21584 1.01815 0.93694 0.89774 1.20910 0.83293 0.88070 0.85461 1.90506 1.56318 1.18113 1.85538 1.41925 1.58411 1.12494 1.08178 1.19657 1.42105 0.95829 0.88624 0.90662 1.25990 0.97206 0.96618 1.01219 1.69673 1.48633 1.09614 1.28074 0.84920 0.78298 0.77957 0.77462 1.20100 1.19302 1.19518 0.93237 0.89291 0.93456 0.85688 0.90673 0.89640 0.90722 0.89385 0.87792 0.84660 0.82422 0.89191 0.69527 0.83278 0.88186 0.92350 0.77056 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.41 71.98 0.68 -1.97 16 2 C 0.06 1.34 2.95 44.91 0.13 1.47 16 3 H 0.06 1.06 7.80 -2.39 -0.02 1.04 16 4 C 0.12 1.92 5.20 86.38 0.45 2.37 16 5 N -0.62 -9.88 2.66 -846.76 -2.25 -12.13 16 6 C 0.07 0.54 10.24 127.77 1.31 1.85 16 7 C 0.51 10.72 6.04 87.66 0.53 11.25 16 8 O -0.55 -16.75 14.15 -3.03 -0.04 -16.79 16 9 C -0.14 -2.24 4.40 29.85 0.13 -2.11 16 10 C 0.13 2.21 5.77 86.38 0.50 2.71 16 11 N -0.30 -6.01 3.44 -351.83 -1.21 -7.22 16 12 C 0.18 2.89 12.79 180.27 2.31 5.19 16 13 N -0.34 -8.62 12.36 -60.30 -0.74 -9.37 16 14 N -0.11 -3.41 13.43 37.01 0.50 -2.91 16 15 N -0.12 -3.26 13.08 37.02 0.48 -2.78 16 16 N -0.68 -22.77 5.82 -495.58 -2.88 -25.65 16 17 C 0.06 2.32 5.97 85.56 0.51 2.83 16 18 C 0.44 21.75 7.82 87.66 0.69 22.43 16 19 O -0.62 -36.04 15.78 -3.05 -0.05 -36.09 16 20 N -0.57 -30.44 5.29 -306.99 -1.62 -32.06 16 21 C -0.33 -19.53 9.68 84.04 0.81 -18.71 16 22 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 23 C -0.01 -0.58 5.50 84.92 0.47 -0.11 16 24 N -0.92 -50.52 13.05 21.66 0.28 -50.23 16 25 Si 0.99 44.36 29.55 68.60 2.03 46.38 16 26 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 28 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 1.03 7.45 -2.39 -0.02 1.02 16 32 H 0.13 1.05 8.07 -2.39 -0.02 1.03 16 33 H 0.07 1.60 7.42 -2.39 -0.02 1.58 16 34 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.07 0.63 6.44 -2.39 -0.02 0.62 16 36 H 0.09 0.54 8.07 -2.38 -0.02 0.52 16 37 H 0.10 1.86 7.40 -2.39 -0.02 1.84 16 38 H 0.14 1.15 8.11 -2.39 -0.02 1.13 16 39 H 0.16 1.59 8.04 -2.39 -0.02 1.57 16 40 H 0.09 2.25 8.10 -2.39 -0.02 2.23 16 41 H 0.29 0.70 8.06 -2.91 -0.02 0.67 16 42 H 0.34 12.36 4.17 -89.69 -0.37 11.99 16 43 H 0.10 3.32 7.44 -2.39 -0.02 3.30 16 44 H 0.06 1.87 8.05 -2.39 -0.02 1.85 16 45 H 0.40 19.91 7.90 -92.71 -0.73 19.18 16 46 H 0.28 14.24 8.31 -92.70 -0.77 13.47 16 Total: -1.00 -87.79 388.10 2.92 -84.88 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: -0.08 Total: 36.77 kcal Atomic # 6 Polarization: 18.70 SS G_CDS: 8.51 Total: 27.21 kcal Atomic # 7 Polarization: -134.91 SS G_CDS: -7.45 Total: -142.36 kcal Atomic # 8 Polarization: -52.79 SS G_CDS: -0.09 Total: -52.88 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -87.79 2.92 -84.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571410117.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.802 kcal (2) G-P(sol) polarization free energy of solvation -87.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds