Wall clock time and date at job start Tue Mar 31 2020 22:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47051 * 2 1 4 4 C 1.52994 * 109.47313 * 120.00299 * 2 1 3 5 5 N 1.46496 * 109.47253 * 175.00173 * 4 2 1 6 6 C 1.46505 * 119.99896 * 270.00133 * 5 4 2 7 7 C 1.34777 * 120.00271 * 89.99668 * 5 4 2 8 8 O 1.21278 * 119.99854 * 0.02562 * 7 5 4 9 9 C 1.50703 * 120.00161 * 180.02562 * 7 5 4 10 10 H 1.09002 * 109.47152 * 60.00245 * 9 7 5 11 11 C 1.53002 * 109.46966 * 300.00385 * 9 7 5 12 12 N 1.46505 * 109.47064 * 180.02562 * 9 7 5 13 13 C 1.34769 * 119.99686 * 204.99925 * 12 9 7 14 14 O 1.21275 * 120.00678 * 0.02562 * 13 12 9 15 15 C 1.50701 * 119.99690 * 179.97438 * 13 12 9 16 16 N 1.46495 * 109.47424 * 180.02562 * 15 13 12 17 17 C 1.34593 * 126.44212 * 125.00014 * 16 15 13 18 18 N 1.31069 * 106.68537 * 180.02562 * 17 16 15 19 19 N 1.28847 * 107.98850 * 359.97438 * 18 17 16 20 20 N 1.28731 * 109.39368 * 359.73848 * 19 18 17 21 21 N 1.46497 * 109.47069 * 240.00718 * 2 1 3 22 22 C 1.36933 * 120.00426 * 84.99814 * 21 2 1 23 23 H 1.08001 * 119.99805 * 359.97438 * 22 21 2 24 24 C 1.38815 * 120.00471 * 180.02562 * 22 21 2 25 25 N 1.31613 * 120.00440 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 119.99470 * 359.97438 * 24 22 21 27 27 H 1.48497 * 109.47117 * 90.00466 * 26 24 22 28 28 H 1.48504 * 109.46947 * 209.99971 * 26 24 22 29 29 H 1.48493 * 109.47546 * 330.00227 * 26 24 22 30 30 H 1.08997 * 109.47300 * 299.99663 * 1 2 3 31 31 H 1.09000 * 109.47560 * 59.99926 * 1 2 3 32 32 H 1.09004 * 109.46904 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46983 * 55.00227 * 4 2 1 34 34 H 1.09004 * 109.47116 * 294.99798 * 4 2 1 35 35 H 1.08999 * 109.47333 * 269.99341 * 6 5 4 36 36 H 1.08997 * 109.47024 * 30.00155 * 6 5 4 37 37 H 1.09000 * 109.46875 * 149.99915 * 6 5 4 38 38 H 1.08996 * 109.47407 * 60.00310 * 11 9 7 39 39 H 1.09000 * 109.46986 * 180.02562 * 11 9 7 40 40 H 1.09002 * 109.47075 * 299.99352 * 11 9 7 41 41 H 0.97000 * 119.99634 * 25.00257 * 12 9 7 42 42 H 1.08996 * 109.47353 * 300.00507 * 15 13 12 43 43 H 1.09006 * 109.47337 * 60.00072 * 15 13 12 44 44 H 1.08004 * 126.65815 * 359.96809 * 17 16 15 45 45 H 0.97008 * 119.99972 * 264.99944 * 21 2 1 46 46 H 0.97004 * 120.00256 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5000 -0.8264 1.1905 6 6 4.1258 -1.9919 0.5610 7 6 4.2676 0.1492 1.7155 8 8 3.7495 1.1139 2.2369 9 6 5.7695 0.0414 1.6546 10 1 6.0880 -0.0127 0.6136 11 6 6.2204 -1.2211 2.3921 12 7 6.3697 1.2177 2.2889 13 6 7.6099 1.6126 1.9394 14 8 8.2290 0.9945 1.0995 15 6 8.2271 2.8229 2.5915 16 7 9.5679 3.0424 2.0438 17 6 10.0250 4.1750 1.4782 18 7 11.2663 3.9452 1.1257 19 7 11.5567 2.7347 1.4580 20 7 10.5346 2.1882 2.0182 21 7 2.0183 -0.6904 -1.1962 22 6 2.1491 -0.0073 -2.3758 23 1 1.8918 1.0405 -2.4243 24 6 2.6113 -0.6616 -3.5094 25 7 2.7374 -0.0049 -4.6430 26 14 3.0555 -2.4741 -3.4256 27 1 1.8582 -3.2925 -3.7445 28 1 4.1306 -2.7661 -4.4076 29 1 3.5311 -2.8045 -2.0582 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7198 1.2950 34 1 1.7517 -0.1584 2.1369 35 1 4.2824 -2.7688 1.3093 36 1 3.4757 -2.3720 -0.2270 37 1 5.0851 -1.7019 0.1322 38 1 5.7740 -2.0964 1.9205 39 1 7.3068 -1.2988 2.3484 40 1 5.9020 -1.1670 3.4332 41 1 5.8743 1.7123 2.9605 42 1 7.6070 3.6975 2.3948 43 1 8.2957 2.6608 3.6673 44 1 9.4753 5.0944 1.3406 45 1 2.2490 -1.6317 -1.1528 46 1 3.0608 -0.4621 -5.4350 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571412601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:02 Heat of formation + Delta-G solvation = 90.444000 kcal Electronic energy + Delta-G solvation = -30169.261959 eV Core-core repulsion = 25940.859622 eV Total energy + Delta-G solvation = -4228.402337 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.39160 -40.78858 -39.59850 -36.83062 -35.87432 -35.24963 -34.62166 -32.69773 -32.31526 -31.37594 -29.65233 -29.06066 -27.14663 -26.33304 -24.48453 -24.06167 -23.59475 -22.98269 -21.07831 -20.43727 -19.65421 -18.39378 -18.14549 -17.75859 -17.08128 -16.79162 -16.27531 -16.21041 -15.92448 -15.58068 -15.08513 -14.84754 -14.43722 -14.19049 -13.92581 -13.70222 -13.49440 -13.06224 -12.98602 -12.86535 -12.66612 -12.43366 -12.37086 -12.29328 -11.90826 -11.83565 -11.58739 -11.54023 -11.44818 -11.36210 -11.00062 -10.77663 -10.68394 -10.66865 -10.30067 -10.15424 -9.89587 -9.62867 -9.51130 -9.04467 -8.52842 -7.34858 -5.83507 -3.19593 0.96755 1.49132 2.01718 2.07392 2.45763 2.54207 3.11233 3.18618 3.29105 3.37477 3.76081 3.94647 4.06000 4.23624 4.26824 4.48995 4.51233 4.79862 4.91368 5.06058 5.12508 5.15344 5.26216 5.35393 5.41659 5.42948 5.49365 5.52085 5.57708 5.75082 5.78346 5.84879 5.90249 6.00469 6.05598 6.07667 6.36057 6.48849 6.68513 6.92920 6.97019 7.33739 7.66703 7.92108 8.06935 8.34493 8.39279 9.12110 9.83857 10.03056 11.34980 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.012305 B = 0.002958 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.959360 B = 9465.160272 C =10426.883278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.160 3.840 3 H 0.059 0.941 4 C 0.107 3.893 5 N -0.588 5.588 6 C 0.066 3.934 7 C 0.517 3.483 8 O -0.545 6.545 9 C 0.127 3.873 10 H 0.119 0.881 11 C -0.171 4.171 12 N -0.702 5.702 13 C 0.504 3.496 14 O -0.506 6.506 15 C 0.098 3.902 16 N -0.301 5.301 17 C 0.163 3.837 18 N -0.307 5.307 19 N -0.078 5.078 20 N -0.064 5.064 21 N -0.745 5.745 22 C -0.240 4.240 23 H 0.088 0.912 24 C 0.004 3.996 25 N -0.933 5.933 26 Si 0.881 3.119 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.274 1.274 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.412 0.588 42 H 0.147 0.853 43 H 0.138 0.862 44 H 0.237 0.763 45 H 0.357 0.643 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.363 2.544 20.978 21.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.050 3.950 3 H 0.077 0.923 4 C -0.016 4.016 5 N -0.319 5.319 6 C -0.077 4.077 7 C 0.303 3.697 8 O -0.423 6.423 9 C 0.019 3.981 10 H 0.137 0.863 11 C -0.229 4.229 12 N -0.357 5.357 13 C 0.286 3.714 14 O -0.380 6.380 15 C -0.028 4.028 16 N -0.104 5.104 17 C -0.136 4.136 18 N -0.154 5.154 19 N -0.072 5.072 20 N -0.050 5.050 21 N -0.389 5.389 22 C -0.370 4.370 23 H 0.106 0.894 24 C -0.192 4.192 25 N -0.580 5.580 26 Si 0.712 3.288 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.201 1.201 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.249 0.751 42 H 0.165 0.835 43 H 0.155 0.845 44 H 0.253 0.747 45 H 0.191 0.809 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.723 1.973 20.304 21.479 hybrid contribution -1.056 -0.582 0.072 1.208 sum 5.667 1.391 20.376 21.195 Atomic orbital electron populations 1.22344 0.98166 1.00943 1.00892 1.20617 0.92270 0.96495 0.85596 0.92258 1.21964 0.78175 1.01524 0.99935 1.47480 1.06949 1.21006 1.56429 1.22313 0.99938 0.87492 0.97941 1.20283 0.88577 0.82528 0.78270 1.90654 1.74663 1.31031 1.45965 1.20803 0.90585 0.86209 1.00531 0.86316 1.22388 1.03269 0.96442 1.00848 1.45503 1.15827 1.30614 1.43721 1.20087 0.82191 0.85650 0.83439 1.90884 1.60857 1.54858 1.31362 1.21955 0.78599 1.01145 1.01070 1.48137 1.12176 1.09712 1.40336 1.27781 0.93478 0.94449 0.97883 1.75005 1.11175 1.09643 1.19563 1.78679 1.17280 1.00465 1.10826 1.78999 0.92492 1.16759 1.16798 1.42810 1.79835 1.09121 1.07152 1.19037 1.36948 0.95557 0.85477 0.89390 1.24674 1.01546 0.97377 0.95571 1.69687 1.52562 1.35503 1.00289 0.86700 0.78176 0.86983 0.76924 1.21208 1.21749 1.20108 0.93950 0.92008 0.93517 0.90680 0.89531 0.92316 0.89533 0.90695 0.89600 0.90769 0.91796 0.75102 0.83516 0.84474 0.74739 0.80873 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.49 37.16 0.35 -2.27 16 2 C 0.16 2.86 3.20 -67.93 -0.22 2.65 16 3 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 4 C 0.11 1.50 5.05 -4.05 -0.02 1.48 16 5 N -0.59 -8.12 2.73 -181.57 -0.50 -8.61 16 6 C 0.07 0.83 8.42 59.85 0.50 1.34 16 7 C 0.52 7.13 7.14 -10.98 -0.08 7.05 16 8 O -0.54 -8.48 15.42 5.56 0.09 -8.39 16 9 C 0.13 1.47 2.18 -69.08 -0.15 1.32 16 10 H 0.12 1.66 6.84 -51.93 -0.36 1.31 16 11 C -0.17 -1.59 9.12 37.16 0.34 -1.25 16 12 N -0.70 -6.51 4.95 -54.93 -0.27 -6.78 16 13 C 0.50 4.99 7.81 -10.99 -0.09 4.90 16 14 O -0.51 -7.63 15.37 5.56 0.09 -7.55 16 15 C 0.10 0.50 6.96 -5.20 -0.04 0.47 16 16 N -0.30 -2.80 3.19 -63.74 -0.20 -3.00 16 17 C 0.16 1.35 12.79 -90.40 -1.16 0.19 16 18 N -0.31 -3.92 12.36 29.59 0.37 -3.56 16 19 N -0.08 -1.17 13.43 60.35 0.81 -0.36 16 20 N -0.06 -0.87 12.30 60.35 0.74 -0.12 16 21 N -0.74 -16.01 4.37 -53.43 -0.23 -16.24 16 22 C -0.24 -6.45 10.41 -15.06 -0.16 -6.60 16 23 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 24 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 25 N -0.93 -28.72 13.97 55.49 0.78 -27.95 16 26 Si 0.88 20.73 27.73 -169.99 -4.71 16.01 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.27 -5.56 4.90 56.52 0.28 -5.29 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.09 1.15 7.42 -51.93 -0.39 0.77 16 35 H 0.06 0.54 6.95 -51.93 -0.36 0.18 16 36 H 0.09 1.28 3.94 -51.93 -0.20 1.08 16 37 H 0.07 0.94 6.01 -51.93 -0.31 0.63 16 38 H 0.09 0.74 4.53 -51.93 -0.24 0.50 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.41 2.96 7.79 -40.82 -0.32 2.64 16 42 H 0.15 0.13 8.08 -51.93 -0.42 -0.29 16 43 H 0.14 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.24 0.57 8.06 -52.48 -0.42 0.15 16 45 H 0.36 7.31 3.49 -40.82 -0.14 7.17 16 46 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 377.49 15.07 5.69 5.69 Total: -1.00 -39.27 377.49 -4.38 -43.65 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -6.21 Total: 7.92 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -0.80 Total: 9.29 kcal Atomic # 7 Polarization: -68.11 SS G_CDS: 1.49 Total: -66.62 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.17 Total: -15.94 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.71 Total: 16.01 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -39.27 -4.38 -43.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571412601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.090 kcal (2) G-P(sol) polarization free energy of solvation -39.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds