Wall clock time and date at job start Tue Mar 31 2020 22:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47051 * 2 1 4 4 C 1.52994 * 109.47313 * 120.00299 * 2 1 3 5 5 N 1.46496 * 109.47253 * 175.00173 * 4 2 1 6 6 C 1.46505 * 119.99896 * 270.00133 * 5 4 2 7 7 C 1.34777 * 120.00271 * 89.99668 * 5 4 2 8 8 O 1.21278 * 119.99854 * 0.02562 * 7 5 4 9 9 C 1.50703 * 120.00161 * 180.02562 * 7 5 4 10 10 H 1.09002 * 109.47152 * 60.00245 * 9 7 5 11 11 C 1.53002 * 109.46966 * 300.00385 * 9 7 5 12 12 N 1.46505 * 109.47064 * 180.02562 * 9 7 5 13 13 C 1.34769 * 119.99686 * 204.99925 * 12 9 7 14 14 O 1.21275 * 120.00678 * 0.02562 * 13 12 9 15 15 C 1.50701 * 119.99690 * 179.97438 * 13 12 9 16 16 N 1.46495 * 109.47424 * 180.02562 * 15 13 12 17 17 C 1.34593 * 126.44212 * 125.00014 * 16 15 13 18 18 N 1.31069 * 106.68537 * 180.02562 * 17 16 15 19 19 N 1.28847 * 107.98850 * 359.97438 * 18 17 16 20 20 N 1.28731 * 109.39368 * 359.73848 * 19 18 17 21 21 N 1.46497 * 109.47069 * 240.00718 * 2 1 3 22 22 C 1.36933 * 120.00426 * 84.99814 * 21 2 1 23 23 H 1.08001 * 119.99805 * 359.97438 * 22 21 2 24 24 C 1.38815 * 120.00471 * 180.02562 * 22 21 2 25 25 N 1.31613 * 120.00440 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 119.99470 * 359.97438 * 24 22 21 27 27 H 1.48497 * 109.47117 * 90.00466 * 26 24 22 28 28 H 1.48504 * 109.46947 * 209.99971 * 26 24 22 29 29 H 1.48493 * 109.47546 * 330.00227 * 26 24 22 30 30 H 1.08997 * 109.47300 * 299.99663 * 1 2 3 31 31 H 1.09000 * 109.47560 * 59.99926 * 1 2 3 32 32 H 1.09004 * 109.46904 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46983 * 55.00227 * 4 2 1 34 34 H 1.09004 * 109.47116 * 294.99798 * 4 2 1 35 35 H 1.08999 * 109.47333 * 269.99341 * 6 5 4 36 36 H 1.08997 * 109.47024 * 30.00155 * 6 5 4 37 37 H 1.09000 * 109.46875 * 149.99915 * 6 5 4 38 38 H 1.08996 * 109.47407 * 60.00310 * 11 9 7 39 39 H 1.09000 * 109.46986 * 180.02562 * 11 9 7 40 40 H 1.09002 * 109.47075 * 299.99352 * 11 9 7 41 41 H 0.97000 * 119.99634 * 25.00257 * 12 9 7 42 42 H 1.08996 * 109.47353 * 300.00507 * 15 13 12 43 43 H 1.09006 * 109.47337 * 60.00072 * 15 13 12 44 44 H 1.08004 * 126.65815 * 359.96809 * 17 16 15 45 45 H 0.97008 * 119.99972 * 264.99944 * 21 2 1 46 46 H 0.97004 * 120.00256 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5000 -0.8264 1.1905 6 6 4.1258 -1.9919 0.5610 7 6 4.2676 0.1492 1.7155 8 8 3.7495 1.1139 2.2369 9 6 5.7695 0.0414 1.6546 10 1 6.0880 -0.0127 0.6136 11 6 6.2204 -1.2211 2.3921 12 7 6.3697 1.2177 2.2889 13 6 7.6099 1.6126 1.9394 14 8 8.2290 0.9945 1.0995 15 6 8.2271 2.8229 2.5915 16 7 9.5679 3.0424 2.0438 17 6 10.0250 4.1750 1.4782 18 7 11.2663 3.9452 1.1257 19 7 11.5567 2.7347 1.4580 20 7 10.5346 2.1882 2.0182 21 7 2.0183 -0.6904 -1.1962 22 6 2.1491 -0.0073 -2.3758 23 1 1.8918 1.0405 -2.4243 24 6 2.6113 -0.6616 -3.5094 25 7 2.7374 -0.0049 -4.6430 26 14 3.0555 -2.4741 -3.4256 27 1 1.8582 -3.2925 -3.7445 28 1 4.1306 -2.7661 -4.4076 29 1 3.5311 -2.8045 -2.0582 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7198 1.2950 34 1 1.7517 -0.1584 2.1369 35 1 4.2824 -2.7688 1.3093 36 1 3.4757 -2.3720 -0.2270 37 1 5.0851 -1.7019 0.1322 38 1 5.7740 -2.0964 1.9205 39 1 7.3068 -1.2988 2.3484 40 1 5.9020 -1.1670 3.4332 41 1 5.8743 1.7123 2.9605 42 1 7.6070 3.6975 2.3948 43 1 8.2957 2.6608 3.6673 44 1 9.4753 5.0944 1.3406 45 1 2.2490 -1.6317 -1.1528 46 1 3.0608 -0.4621 -5.4350 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571412601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:02 Heat of formation + Delta-G solvation = 58.248120 kcal Electronic energy + Delta-G solvation = -30170.658077 eV Core-core repulsion = 25940.859622 eV Total energy + Delta-G solvation = -4229.798455 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.18033 -41.73478 -40.55412 -38.18237 -36.67155 -36.19474 -35.94016 -34.12176 -33.49101 -32.39760 -31.29627 -29.77170 -28.21698 -27.41236 -25.67516 -25.08752 -24.81186 -23.99804 -22.09762 -21.66842 -20.75953 -19.71858 -19.22360 -18.79875 -17.96580 -17.72670 -17.24428 -16.97286 -16.84579 -16.56522 -16.45374 -16.19394 -15.62065 -15.31176 -15.14742 -14.66686 -14.58536 -14.32649 -14.19422 -13.98768 -13.64897 -13.57281 -13.47172 -13.29759 -13.18678 -12.94913 -12.78861 -12.74499 -12.58881 -12.33076 -12.23511 -12.21884 -12.15747 -11.78536 -11.68408 -11.51462 -11.12753 -11.03118 -10.90023 -10.38861 -9.69845 -9.26219 -8.01585 -5.34805 0.24024 0.92289 1.24133 1.27982 1.30638 1.41383 1.47433 1.49075 1.68113 2.20583 2.48840 3.18324 3.27725 3.31316 3.46879 3.54912 3.56375 3.93316 3.98068 4.00108 4.00573 4.08761 4.16910 4.32784 4.38240 4.49672 4.61244 4.63061 4.69371 4.71323 4.74919 4.82561 4.85487 5.02091 5.12212 5.16435 5.18428 5.24449 5.33335 5.60995 5.77527 6.19819 6.26390 6.28739 6.94236 7.01068 7.09251 7.56249 7.82875 8.04851 9.20341 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.012305 B = 0.002958 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.959360 B = 9465.160272 C =10426.883278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.024 0.976 4 C 0.115 3.885 5 N -0.593 5.593 6 C 0.061 3.939 7 C 0.514 3.486 8 O -0.565 6.565 9 C 0.129 3.871 10 H 0.090 0.910 11 C -0.161 4.161 12 N -0.693 5.693 13 C 0.500 3.500 14 O -0.566 6.566 15 C 0.098 3.902 16 N -0.299 5.299 17 C 0.183 3.817 18 N -0.347 5.347 19 N -0.119 5.119 20 N -0.093 5.093 21 N -0.741 5.741 22 C -0.221 4.221 23 H 0.043 0.957 24 C -0.070 4.070 25 N -0.990 5.990 26 Si 0.948 3.052 27 H -0.282 1.282 28 H -0.306 1.306 29 H -0.222 1.222 30 H 0.072 0.928 31 H 0.028 0.972 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.424 0.576 42 H 0.200 0.800 43 H 0.178 0.822 44 H 0.293 0.707 45 H 0.367 0.633 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.359 1.531 24.443 24.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 H 0.042 0.958 4 C -0.008 4.008 5 N -0.323 5.323 6 C -0.081 4.081 7 C 0.301 3.699 8 O -0.445 6.445 9 C 0.020 3.980 10 H 0.108 0.892 11 C -0.219 4.219 12 N -0.348 5.348 13 C 0.285 3.715 14 O -0.443 6.443 15 C -0.025 4.025 16 N -0.102 5.102 17 C -0.114 4.114 18 N -0.195 5.195 19 N -0.113 5.113 20 N -0.080 5.080 21 N -0.387 5.387 22 C -0.352 4.352 23 H 0.061 0.939 24 C -0.260 4.260 25 N -0.641 5.641 26 Si 0.775 3.225 27 H -0.208 1.208 28 H -0.234 1.234 29 H -0.146 1.146 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.264 0.736 42 H 0.217 0.783 43 H 0.195 0.805 44 H 0.308 0.692 45 H 0.203 0.797 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.676 0.957 23.879 24.562 hybrid contribution -0.901 -0.092 -0.968 1.326 sum 4.774 0.866 22.911 23.419 Atomic orbital electron populations 1.22208 0.96430 1.02025 1.00825 1.20800 0.93470 0.95005 0.86107 0.95777 1.21894 0.78475 1.02771 0.97683 1.47598 1.06966 1.21485 1.56295 1.22454 0.98986 0.87968 0.98719 1.20620 0.89350 0.82095 0.77805 1.90637 1.75240 1.31659 1.46960 1.20682 0.89236 0.88365 0.99710 0.89174 1.22316 1.02619 0.95428 1.01503 1.45457 1.15810 1.30081 1.43467 1.20901 0.81712 0.86333 0.82531 1.90873 1.62230 1.57060 1.34145 1.22498 0.76898 1.00689 1.02408 1.48405 1.12648 1.09337 1.39798 1.28786 0.92325 0.95428 0.94898 1.74891 1.13910 1.09347 1.21315 1.78635 1.18641 1.01659 1.12410 1.78896 0.93350 1.18217 1.17564 1.42704 1.80005 1.09447 1.06516 1.18895 1.34882 0.93915 0.87533 0.93900 1.25553 1.02491 1.02991 0.94999 1.69908 1.54922 1.37939 1.01321 0.85604 0.77453 0.80157 0.79277 1.20797 1.23398 1.14610 0.90886 0.95253 0.91785 0.87626 0.88276 0.88081 0.91350 0.91214 0.88651 0.91678 0.90126 0.73625 0.78325 0.80490 0.69157 0.79704 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.71 9.49 71.98 0.68 -4.02 16 2 C 0.15 5.35 3.20 44.99 0.14 5.50 16 3 H 0.02 1.00 8.08 -2.38 -0.02 0.98 16 4 C 0.11 2.84 5.05 86.38 0.44 3.28 16 5 N -0.59 -14.75 2.73 -846.77 -2.31 -17.06 16 6 C 0.06 1.33 8.42 127.77 1.08 2.40 16 7 C 0.51 13.17 7.14 87.66 0.63 13.79 16 8 O -0.57 -16.50 15.42 -3.02 -0.05 -16.55 16 9 C 0.13 2.82 2.18 44.25 0.10 2.92 16 10 H 0.09 2.55 6.84 -2.39 -0.02 2.53 16 11 C -0.16 -2.62 9.12 71.98 0.66 -1.96 16 12 N -0.69 -11.52 4.95 -446.09 -2.21 -13.73 16 13 C 0.50 9.10 7.81 87.66 0.68 9.78 16 14 O -0.57 -17.16 15.37 -3.01 -0.05 -17.21 16 15 C 0.10 0.66 6.96 85.63 0.60 1.25 16 16 N -0.30 -4.96 3.19 -355.57 -1.13 -6.09 16 17 C 0.18 2.60 12.79 180.27 2.31 4.91 16 18 N -0.35 -8.78 12.36 -60.30 -0.75 -9.52 16 19 N -0.12 -3.65 13.43 37.01 0.50 -3.16 16 20 N -0.09 -2.51 12.30 37.02 0.46 -2.05 16 21 N -0.74 -31.19 4.37 -322.95 -1.41 -32.61 16 22 C -0.22 -12.18 10.41 84.03 0.87 -11.30 16 23 H 0.04 2.70 8.06 -2.91 -0.02 2.68 16 24 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 25 N -0.99 -63.58 13.97 21.65 0.30 -63.27 16 26 Si 0.95 42.58 27.73 68.60 1.90 44.48 16 27 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 28 H -0.31 -14.56 7.11 99.48 0.71 -13.85 16 29 H -0.22 -7.97 4.90 99.48 0.49 -7.49 16 30 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.11 2.04 8.07 -2.39 -0.02 2.02 16 34 H 0.10 2.27 7.42 -2.39 -0.02 2.26 16 35 H 0.10 1.36 6.95 -2.39 -0.02 1.35 16 36 H 0.07 1.74 3.94 -2.39 -0.01 1.73 16 37 H 0.07 1.60 6.01 -2.39 -0.01 1.59 16 38 H 0.10 1.34 4.53 -2.39 -0.01 1.33 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.42 4.91 7.79 -92.71 -0.72 4.18 16 42 H 0.20 -0.75 8.08 -2.39 -0.02 -0.77 16 43 H 0.18 -0.16 8.14 -2.38 -0.02 -0.18 16 44 H 0.29 0.04 8.06 -2.91 -0.02 0.02 16 45 H 0.37 14.08 3.49 -92.70 -0.32 13.76 16 46 H 0.25 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -95.42 377.49 3.68 -91.74 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -0.22 Total: 22.02 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: 8.65 Total: 23.01 kcal Atomic # 7 Polarization: -140.95 SS G_CDS: -6.55 Total: -147.50 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -0.09 Total: -33.75 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.90 Total: 44.48 kcal Total: -95.42 3.68 -91.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571412601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.990 kcal (2) G-P(sol) polarization free energy of solvation -95.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds