Wall clock time and date at job start Tue Mar 31 2020 22:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47411 * 2 1 4 4 C 1.52997 * 109.47105 * 239.99984 * 2 1 3 5 5 N 1.46500 * 109.47357 * 185.00121 * 4 2 1 6 6 C 1.46498 * 119.99963 * 270.00236 * 5 4 2 7 7 C 1.34777 * 120.00084 * 89.99432 * 5 4 2 8 8 O 1.21283 * 119.99665 * 0.02562 * 7 5 4 9 9 C 1.50697 * 120.00075 * 180.02562 * 7 5 4 10 10 H 1.08998 * 109.46862 * 60.01098 * 9 7 5 11 11 C 1.52997 * 109.47466 * 300.00543 * 9 7 5 12 12 N 1.46506 * 109.47015 * 180.02562 * 9 7 5 13 13 C 1.34777 * 120.00033 * 205.00057 * 12 9 7 14 14 O 1.21287 * 119.99681 * 0.02562 * 13 12 9 15 15 C 1.50696 * 120.00198 * 180.02562 * 13 12 9 16 16 N 1.46496 * 109.47214 * 179.97438 * 15 13 12 17 17 C 1.34603 * 126.43814 * 125.00556 * 16 15 13 18 18 N 1.31068 * 106.68375 * 180.02562 * 17 16 15 19 19 N 1.28843 * 107.98621 * 359.97438 * 18 17 16 20 20 N 1.28739 * 109.39787 * 359.73678 * 19 18 17 21 21 N 1.46497 * 109.46987 * 119.99893 * 2 1 3 22 22 C 1.36938 * 120.00243 * 274.99920 * 21 2 1 23 23 H 1.08001 * 119.99991 * 359.97438 * 22 21 2 24 24 C 1.38809 * 120.00163 * 179.97438 * 22 21 2 25 25 N 1.31617 * 120.00083 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 120.00257 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47390 * 89.99192 * 26 24 22 28 28 H 1.48495 * 109.47147 * 210.00096 * 26 24 22 29 29 H 1.48502 * 109.46548 * 329.99787 * 26 24 22 30 30 H 1.09000 * 109.47337 * 300.00422 * 1 2 3 31 31 H 1.09000 * 109.47152 * 59.99619 * 1 2 3 32 32 H 1.09000 * 109.47411 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47374 * 65.00230 * 4 2 1 34 34 H 1.08999 * 109.47317 * 305.00070 * 4 2 1 35 35 H 1.09001 * 109.47076 * 269.99498 * 6 5 4 36 36 H 1.08996 * 109.47427 * 29.99981 * 6 5 4 37 37 H 1.08999 * 109.47290 * 149.99686 * 6 5 4 38 38 H 1.09002 * 109.47153 * 59.99773 * 11 9 7 39 39 H 1.09001 * 109.46832 * 299.99964 * 11 9 7 40 40 H 1.09004 * 109.47261 * 179.97438 * 11 9 7 41 41 H 0.96992 * 120.00062 * 25.00511 * 12 9 7 42 42 H 1.08997 * 109.47364 * 300.00354 * 15 13 12 43 43 H 1.09001 * 109.46822 * 60.00123 * 15 13 12 44 44 H 1.08001 * 126.65742 * 359.95908 * 17 16 15 45 45 H 0.97001 * 119.99912 * 95.00308 * 21 2 1 46 46 H 0.97002 * 120.00636 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5000 -0.8264 -1.1906 6 6 4.3343 0.2340 -1.7612 7 6 4.0757 -1.8987 -0.6115 8 8 3.3850 -2.7767 -0.1394 9 6 5.5776 -2.0066 -0.5507 10 1 5.9805 -1.1596 0.0046 11 6 6.1471 -2.0030 -1.9707 12 7 5.9507 -3.2537 0.1216 13 6 7.1445 -3.3554 0.7388 14 8 7.9097 -2.4144 0.7381 15 6 7.5286 -4.6384 1.4298 16 7 8.8628 -4.4958 2.0179 17 6 9.1952 -4.7037 3.3056 18 7 10.4804 -4.4662 3.4054 19 7 10.9147 -4.1305 2.2398 20 7 9.9410 -4.1531 1.3979 21 7 2.0183 -0.6906 1.1962 22 6 2.1491 -0.0075 2.3758 23 1 1.8926 1.0405 2.4242 24 6 2.6112 -0.6619 3.5093 25 7 2.7374 -0.0052 4.6429 26 14 3.0555 -2.4744 3.4255 27 1 4.4883 -2.6167 3.0621 28 1 2.8153 -3.1046 4.7485 29 1 2.2158 -3.1428 2.3991 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7517 -0.1583 -2.1369 34 1 1.6054 -1.7198 -1.2952 35 1 4.5425 0.0092 -2.8073 36 1 3.8091 1.1866 -1.6918 37 1 5.2722 0.2952 -1.2092 38 1 5.8695 -1.0754 -2.4712 39 1 5.7442 -2.8501 -2.5259 40 1 7.2335 -2.0807 -1.9266 41 1 5.3387 -4.0061 0.1224 42 1 6.8062 -4.8581 2.2159 43 1 7.5364 -5.4529 0.7055 44 1 8.5316 -5.0063 4.1021 45 1 2.2490 -1.6317 1.1526 46 1 3.0607 -0.4624 5.4350 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571412602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:06 Heat of formation + Delta-G solvation = 87.721619 kcal Electronic energy + Delta-G solvation = -30952.261441 eV Core-core repulsion = 26723.741052 eV Total energy + Delta-G solvation = -4228.520389 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.29910 -40.72478 -39.53667 -36.57132 -35.76175 -35.22419 -34.69649 -32.60338 -32.22871 -31.30927 -29.45523 -28.96821 -27.25873 -26.26568 -24.37286 -23.96295 -23.50965 -23.01806 -20.96638 -20.26294 -19.54821 -18.40990 -18.04612 -17.72290 -16.94931 -16.71601 -16.19064 -16.10000 -15.79646 -15.54118 -15.14749 -14.74718 -14.32268 -14.07437 -13.82423 -13.66876 -13.37444 -13.14184 -12.85780 -12.84070 -12.59396 -12.43263 -12.28496 -12.21871 -11.92781 -11.81326 -11.61300 -11.52619 -11.35663 -11.27759 -10.97462 -10.73728 -10.63963 -10.57251 -10.20066 -10.06573 -9.81679 -9.57463 -9.40872 -8.96768 -8.49921 -7.25581 -5.78478 -3.12180 1.05955 1.58941 2.12804 2.15922 2.55395 2.63165 3.15551 3.31090 3.39144 3.50534 3.87618 4.06400 4.17474 4.31437 4.34346 4.59075 4.61404 4.83368 4.95012 5.03086 5.10996 5.21079 5.25010 5.35380 5.46986 5.50465 5.51627 5.56365 5.62582 5.71677 5.78850 5.84854 5.90915 6.00884 6.06776 6.12823 6.35988 6.52354 6.68100 6.92953 7.06875 7.36770 7.76547 7.99783 8.17284 8.41355 8.47924 9.24861 9.96853 10.18889 11.39755 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.012253 B = 0.003941 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.698109 B = 7102.402341 C = 8655.651640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.159 3.841 3 H 0.053 0.947 4 C 0.106 3.894 5 N -0.596 5.596 6 C 0.073 3.927 7 C 0.521 3.479 8 O -0.533 6.533 9 C 0.128 3.872 10 H 0.118 0.882 11 C -0.170 4.170 12 N -0.702 5.702 13 C 0.507 3.493 14 O -0.508 6.508 15 C 0.096 3.904 16 N -0.300 5.300 17 C 0.164 3.836 18 N -0.307 5.307 19 N -0.080 5.080 20 N -0.065 5.065 21 N -0.747 5.747 22 C -0.239 4.239 23 H 0.087 0.913 24 C 0.003 3.997 25 N -0.935 5.935 26 Si 0.880 3.120 27 H -0.290 1.290 28 H -0.297 1.297 29 H -0.266 1.266 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.412 0.588 42 H 0.146 0.854 43 H 0.139 0.861 44 H 0.236 0.764 45 H 0.375 0.625 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.311 -8.974 -15.079 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.048 3.952 3 H 0.071 0.929 4 C -0.017 4.017 5 N -0.328 5.328 6 C -0.070 4.070 7 C 0.307 3.693 8 O -0.410 6.410 9 C 0.020 3.980 10 H 0.136 0.864 11 C -0.228 4.228 12 N -0.356 5.356 13 C 0.290 3.710 14 O -0.382 6.382 15 C -0.030 4.030 16 N -0.102 5.102 17 C -0.135 4.135 18 N -0.154 5.154 19 N -0.074 5.074 20 N -0.051 5.051 21 N -0.394 5.394 22 C -0.369 4.369 23 H 0.105 0.895 24 C -0.192 4.192 25 N -0.583 5.583 26 Si 0.711 3.289 27 H -0.217 1.217 28 H -0.224 1.224 29 H -0.192 1.192 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.249 0.751 42 H 0.164 0.836 43 H 0.156 0.844 44 H 0.252 0.748 45 H 0.212 0.788 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.795 -8.215 -15.156 18.188 hybrid contribution -1.230 -1.657 0.588 2.145 sum 4.566 -9.872 -14.569 18.181 Atomic orbital electron populations 1.22373 0.98411 1.01058 1.00627 1.20610 0.92315 0.95915 0.86341 0.92854 1.21983 0.78428 1.02441 0.98831 1.47476 1.07220 1.20435 1.57667 1.22019 0.95936 0.91222 0.97802 1.20242 0.89508 0.82101 0.77402 1.90652 1.64181 1.40229 1.45930 1.20784 0.92603 0.89050 0.95595 0.86437 1.22385 1.02526 1.03847 0.94023 1.45485 1.18091 1.16796 1.55269 1.20034 0.82376 0.89168 0.79461 1.90854 1.50165 1.38500 1.58640 1.21977 0.79554 0.99269 1.02190 1.48107 1.09480 1.44480 1.08140 1.27801 0.95283 1.02294 0.88076 1.74997 1.07174 1.16417 1.16788 1.78649 1.19639 1.15067 0.94031 1.78968 0.89176 1.14490 1.22490 1.43031 1.79420 1.10409 1.06562 1.19075 1.36505 0.95375 0.85993 0.89539 1.24639 1.01671 0.97352 0.95570 1.69703 1.52881 1.35496 1.00223 0.86531 0.78503 0.87530 0.76306 1.21690 1.22389 1.19183 0.92083 0.94168 0.93451 0.90237 0.90019 0.92184 0.90470 0.90784 0.89687 0.91797 0.90779 0.75119 0.83609 0.84355 0.74776 0.78825 0.93243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.49 37.16 0.35 -2.33 16 2 C 0.16 2.85 3.20 -67.93 -0.22 2.63 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 C 0.11 1.47 5.14 -4.04 -0.02 1.45 16 5 N -0.60 -8.01 2.77 -181.58 -0.50 -8.51 16 6 C 0.07 0.71 8.80 59.85 0.53 1.23 16 7 C 0.52 7.90 6.44 -10.99 -0.07 7.83 16 8 O -0.53 -9.62 13.00 5.55 0.07 -9.55 16 9 C 0.13 1.66 2.18 -69.08 -0.15 1.51 16 10 H 0.12 1.78 6.84 -51.93 -0.36 1.42 16 11 C -0.17 -1.60 9.12 37.16 0.34 -1.26 16 12 N -0.70 -8.45 4.95 -54.93 -0.27 -8.72 16 13 C 0.51 6.37 7.81 -10.99 -0.09 6.29 16 14 O -0.51 -8.57 15.37 5.55 0.09 -8.49 16 15 C 0.10 0.78 6.96 -5.20 -0.04 0.74 16 16 N -0.30 -3.46 3.19 -63.74 -0.20 -3.67 16 17 C 0.16 1.75 12.79 -90.39 -1.16 0.59 16 18 N -0.31 -4.42 12.36 29.59 0.37 -4.06 16 19 N -0.08 -1.29 13.43 60.35 0.81 -0.48 16 20 N -0.06 -0.97 12.30 60.35 0.74 -0.23 16 21 N -0.75 -17.40 4.33 -53.43 -0.23 -17.63 16 22 C -0.24 -6.70 10.41 -15.06 -0.16 -6.86 16 23 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 24 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 25 N -0.93 -29.52 13.97 55.49 0.78 -28.74 16 26 Si 0.88 22.36 27.59 -169.99 -4.69 17.67 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 29 H -0.27 -6.68 6.52 56.52 0.37 -6.32 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.08 1.21 7.42 -51.93 -0.39 0.83 16 35 H 0.06 0.41 6.95 -51.93 -0.36 0.05 16 36 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 37 H 0.07 0.73 6.01 -51.93 -0.31 0.42 16 38 H 0.08 0.66 4.53 -51.93 -0.24 0.42 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.41 4.27 7.79 -40.82 -0.32 3.95 16 42 H 0.15 0.73 8.08 -51.93 -0.42 0.31 16 43 H 0.14 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.24 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.37 8.91 2.88 -40.82 -0.12 8.79 16 46 H 0.26 7.79 8.31 -40.82 -0.34 7.46 16 LS Contribution 379.84 15.07 5.72 5.72 Total: -1.00 -41.00 379.84 -4.41 -45.41 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.31 Total: 9.45 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: -0.77 Total: 11.81 kcal Atomic # 7 Polarization: -73.52 SS G_CDS: 1.48 Total: -72.03 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: 0.16 Total: -18.04 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.69 Total: 17.67 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -41.00 -4.41 -45.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571412602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.134 kcal (2) G-P(sol) polarization free energy of solvation -41.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds