Wall clock time and date at job start Tue Mar 31 2020 22:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34232 * 116.99764 * 2 1 4 4 O 1.20833 * 120.00009 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00265 * 180.02562 * 3 2 1 6 6 C 1.53962 * 113.58922 * 180.02562 * 5 3 2 7 7 C 1.52792 * 86.78112 * 220.70697 * 6 5 3 8 8 C 1.52800 * 88.10522 * 24.87550 * 7 6 5 9 9 C 1.53470 * 115.58417 * 142.43788 * 7 6 5 10 10 N 1.48789 * 104.33938 * 152.79005 * 9 7 6 11 11 C 1.46910 * 110.99836 * 201.74460 * 10 9 7 12 12 C 1.52996 * 109.46915 * 175.29865 * 11 10 9 13 13 H 1.09002 * 109.47366 * 305.08911 * 12 11 10 14 14 C 1.53004 * 109.47104 * 185.08471 * 12 11 10 15 15 C 1.52998 * 109.47323 * 65.08940 * 12 11 10 16 16 C 1.50700 * 109.47424 * 185.00145 * 15 12 11 17 17 H 1.08005 * 119.99976 * 359.97438 * 16 15 12 18 18 C 1.37876 * 119.99941 * 179.97438 * 16 15 12 19 19 N 1.31514 * 120.00426 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99891 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47141 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47106 * 119.99533 * 20 18 16 23 23 H 1.48501 * 109.47179 * 240.00017 * 20 18 16 24 24 C 1.48646 * 104.39094 * 321.40008 * 10 9 7 25 25 C 1.53353 * 115.65538 * 267.21731 * 7 6 5 26 26 H 1.08997 * 110.39519 * 111.92553 * 25 7 6 27 27 C 1.50697 * 110.39657 * 349.51976 * 25 7 6 28 28 O 1.20825 * 120.00195 * 267.12872 * 27 25 7 29 29 O 1.34226 * 119.99836 * 87.12675 * 27 25 7 30 30 H 1.08998 * 109.47624 * 299.99896 * 1 2 3 31 31 H 1.09002 * 109.47265 * 60.00141 * 1 2 3 32 32 H 1.09005 * 109.47062 * 180.02562 * 1 2 3 33 33 H 1.08998 * 112.88162 * 311.15700 * 5 3 2 34 34 H 1.08992 * 113.66445 * 106.23253 * 6 5 3 35 35 H 1.09000 * 113.74438 * 335.18677 * 6 5 3 36 36 H 1.09011 * 113.66480 * 89.59071 * 8 7 6 37 37 H 1.08998 * 113.66888 * 220.65092 * 8 7 6 38 38 H 1.09001 * 110.45746 * 34.07894 * 9 7 6 39 39 H 1.08999 * 110.46220 * 271.50723 * 9 7 6 40 40 H 1.08999 * 109.46859 * 55.30256 * 11 10 9 41 41 H 1.08997 * 109.46990 * 295.30337 * 11 10 9 42 42 H 1.09003 * 109.46712 * 64.67461 * 14 12 11 43 43 H 1.08998 * 109.47342 * 184.67114 * 14 12 11 44 44 H 1.08996 * 109.47082 * 304.68029 * 14 12 11 45 45 H 1.09002 * 109.46691 * 304.99567 * 15 12 11 46 46 H 1.09001 * 109.47402 * 64.99610 * 15 12 11 47 47 H 0.96997 * 120.00397 * 180.02562 * 19 18 16 48 48 H 1.08995 * 110.40105 * 157.72330 * 24 10 9 49 49 H 1.09001 * 110.39943 * 280.14131 * 24 10 9 50 50 H 0.96704 * 117.00098 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4031 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.1075 2.7164 0.0001 7 6 5.1595 2.2301 -0.9956 8 6 4.1907 1.1195 -1.3992 9 6 5.5292 3.2223 -2.1065 10 7 6.9250 2.8609 -2.4738 11 6 7.6060 3.9872 -3.1265 12 6 9.0688 3.6193 -3.3827 13 1 9.5352 3.3109 -2.4471 14 6 9.8092 4.8343 -3.9456 15 6 9.1367 2.4694 -4.3896 16 6 10.5679 2.0252 -4.5493 17 1 11.3509 2.5146 -3.9890 18 6 10.8777 0.9942 -5.4108 19 7 9.9243 0.3980 -6.0927 20 14 12.6518 0.4442 -5.6092 21 1 13.5265 1.2698 -4.7381 22 1 12.7735 -0.9843 -5.2221 23 1 13.0661 0.6103 -7.0256 24 6 7.5726 2.5249 -1.1788 25 6 6.4863 1.7633 -0.3846 26 1 6.6059 0.6875 -0.5129 27 6 6.5497 2.1295 1.0758 28 8 7.0596 3.1708 1.4160 29 8 6.0396 1.2990 1.9988 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 4.0243 0.6371 0.7552 34 1 4.5229 3.0272 0.9586 35 1 3.4138 3.4459 -0.4178 36 1 3.5194 1.3984 -2.2115 37 1 4.6727 0.1549 -1.5583 38 1 5.4863 4.2455 -1.7332 39 1 4.8660 3.1000 -2.9628 40 1 7.5597 4.8636 -2.4801 41 1 7.1155 4.2084 -4.0744 42 1 9.8325 5.6249 -3.1956 43 1 10.8288 4.5500 -4.2057 44 1 9.2936 5.1934 -4.8362 45 1 8.5354 1.6348 -4.0290 46 1 8.7511 2.8058 -5.3520 47 1 10.1422 -0.3276 -6.6984 48 1 8.4411 1.8870 -1.3425 49 1 7.8617 3.4339 -0.6514 50 1 6.1040 1.5768 2.9228 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604292057.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:22 Heat of formation + Delta-G solvation = -158.184204 kcal Electronic energy + Delta-G solvation = -30930.574738 eV Core-core repulsion = 26730.345914 eV Total energy + Delta-G solvation = -4200.228824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.83337 -40.53373 -39.23882 -37.45688 -36.51428 -36.26641 -34.48063 -32.22128 -30.75988 -29.11357 -27.74433 -26.95526 -26.29960 -25.50437 -24.42020 -23.18072 -22.13670 -21.06047 -20.57709 -19.24251 -18.28028 -18.13593 -17.90677 -16.97760 -16.82928 -16.53212 -16.39411 -16.24912 -15.26247 -14.89207 -14.54309 -14.48513 -14.29101 -13.70645 -13.64381 -13.40161 -13.20421 -12.92182 -12.64127 -12.55895 -12.40978 -12.27356 -11.93790 -11.91102 -11.66880 -11.53370 -11.40542 -11.17995 -11.09039 -11.06005 -11.01968 -10.83180 -10.80114 -10.65613 -10.46841 -10.39355 -10.25612 -10.06857 -9.63833 -9.08376 -8.83239 -8.26009 -8.05364 -5.89207 -3.89678 1.92562 2.01568 2.45550 2.78413 3.35326 3.43265 3.46757 4.00694 4.03963 4.16116 4.30811 4.48638 4.52503 4.53663 4.72988 4.80626 4.87279 4.95952 5.15188 5.21978 5.24519 5.30914 5.36824 5.46241 5.50540 5.57032 5.60476 5.73287 5.75564 5.78706 5.92753 5.96376 6.04947 6.08518 6.11463 6.15014 6.27379 6.32022 6.39688 6.49622 6.96179 7.01061 7.13706 7.28073 7.43094 7.49237 7.71786 7.85589 8.05078 8.18509 8.56447 9.18329 9.72734 11.21752 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.002757 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.395291 B =10153.887905 C =10676.244515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.473 3.527 4 O -0.509 6.509 5 C -0.113 4.113 6 C -0.110 4.110 7 C -0.070 4.070 8 C -0.096 4.096 9 C 0.046 3.954 10 N -0.490 5.490 11 C 0.053 3.947 12 C -0.087 4.087 13 H 0.056 0.944 14 C -0.134 4.134 15 C 0.035 3.965 16 C -0.513 4.513 17 H 0.052 0.948 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.884 3.116 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.286 1.286 24 C 0.044 3.956 25 C -0.069 4.069 26 H 0.121 0.879 27 C 0.491 3.509 28 O -0.510 6.510 29 O -0.516 6.516 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.134 0.866 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.048 0.952 39 H 0.089 0.911 40 H 0.023 0.977 41 H 0.074 0.926 42 H 0.028 0.972 43 H 0.066 0.934 44 H 0.044 0.956 45 H 0.032 0.968 46 H 0.011 0.989 47 H 0.257 0.743 48 H 0.100 0.900 49 H 0.063 0.937 50 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.744 0.584 15.247 22.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.272 6.272 3 C 0.316 3.684 4 O -0.396 6.396 5 C -0.132 4.132 6 C -0.148 4.148 7 C -0.071 4.071 8 C -0.133 4.133 9 C -0.082 4.082 10 N -0.213 5.213 11 C -0.074 4.074 12 C -0.106 4.106 13 H 0.074 0.926 14 C -0.192 4.192 15 C -0.002 4.002 16 C -0.552 4.552 17 H 0.071 0.929 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.712 3.288 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.084 4.084 25 C -0.089 4.089 26 H 0.139 0.861 27 C 0.333 3.667 28 O -0.397 6.397 29 O -0.328 6.328 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.152 0.848 34 H 0.091 0.909 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.066 0.934 39 H 0.107 0.893 40 H 0.041 0.959 41 H 0.092 0.908 42 H 0.047 0.953 43 H 0.085 0.915 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.029 0.971 47 H 0.067 0.933 48 H 0.119 0.881 49 H 0.082 0.918 50 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -16.860 0.476 14.400 22.178 hybrid contribution 0.772 0.522 1.060 1.412 sum -16.088 0.998 15.460 22.334 Atomic orbital electron populations 1.23273 0.76519 1.03719 1.02484 1.86544 1.23287 1.33523 1.83895 1.23692 0.91779 0.81220 0.71690 1.90658 1.67065 1.36484 1.45423 1.22734 0.87005 1.00934 1.02535 1.23038 0.97386 0.94931 0.99410 1.21677 0.91990 0.97257 0.96165 1.22881 0.96667 0.99963 0.93777 1.23013 0.92581 0.96117 0.96518 1.65528 1.00547 1.36460 1.18765 1.22465 0.96951 0.89839 0.98173 1.21279 0.90926 0.97712 1.00662 0.92551 1.21720 1.01898 0.96482 0.99115 1.19063 0.96367 0.92159 0.92657 1.21350 0.93627 1.16434 1.23754 0.92941 1.24982 0.96578 0.96714 0.96115 1.69981 1.31552 1.24135 1.27672 0.86675 0.85923 0.78464 0.77737 1.19926 1.21183 1.21232 1.23209 0.95991 0.99922 0.89239 1.21610 0.96884 1.04345 0.86076 0.86108 1.23245 0.73206 0.81049 0.89182 1.90727 1.41673 1.25164 1.82165 1.84554 1.75343 1.51731 1.21217 0.92025 0.91860 0.88064 0.84841 0.90888 0.87624 0.88629 0.88725 0.93365 0.89305 0.95929 0.90801 0.95275 0.91517 0.93708 0.94923 0.97098 0.93318 0.88148 0.91844 0.73343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.55 101.05 1.07 1.30 16 2 O -0.36 -3.49 10.57 -39.26 -0.41 -3.91 16 3 C 0.47 5.10 7.48 36.00 0.27 5.37 16 4 O -0.51 -6.72 15.64 -18.76 -0.29 -7.01 16 5 C -0.11 -1.05 4.00 -90.78 -0.36 -1.42 16 6 C -0.11 -1.12 6.22 -26.34 -0.16 -1.29 16 7 C -0.07 -0.77 1.13 -154.30 -0.17 -0.94 16 8 C -0.10 -0.92 6.86 -26.33 -0.18 -1.10 16 9 C 0.05 0.59 5.91 -2.53 -0.01 0.57 16 10 N -0.49 -7.77 4.82 -230.12 -1.11 -8.88 16 11 C 0.05 0.91 4.31 -3.82 -0.02 0.89 16 12 C -0.09 -1.74 2.19 -90.62 -0.20 -1.94 16 13 H 0.06 1.15 6.69 -51.93 -0.35 0.80 16 14 C -0.13 -2.52 9.07 37.16 0.34 -2.18 16 15 C 0.03 0.87 4.39 -27.88 -0.12 0.74 16 16 C -0.51 -14.18 8.34 -34.44 -0.29 -14.46 16 17 H 0.05 1.43 7.08 -52.48 -0.37 1.05 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 20 Si 0.88 21.62 29.54 -169.99 -5.02 16.60 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 C 0.04 0.66 4.82 -2.00 -0.01 0.65 16 25 C -0.07 -0.82 3.16 -90.74 -0.29 -1.11 16 26 H 0.12 1.30 7.77 -51.93 -0.40 0.90 16 27 C 0.49 5.60 5.13 36.00 0.18 5.79 16 28 O -0.51 -7.38 16.33 -18.75 -0.31 -7.69 16 29 O -0.52 -4.17 12.14 -39.25 -0.48 -4.65 16 30 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 31 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 32 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.13 1.10 7.04 -51.93 -0.37 0.73 16 34 H 0.07 0.76 6.10 -51.93 -0.32 0.44 16 35 H 0.11 1.14 7.42 -51.93 -0.39 0.76 16 36 H 0.10 0.91 7.92 -51.92 -0.41 0.50 16 37 H 0.09 0.87 7.88 -51.93 -0.41 0.46 16 38 H 0.05 0.61 7.87 -51.93 -0.41 0.20 16 39 H 0.09 1.08 7.84 -51.93 -0.41 0.68 16 40 H 0.02 0.36 7.98 -51.93 -0.41 -0.06 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 1.35 6.83 -51.93 -0.35 1.00 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.03 0.87 7.62 -51.93 -0.40 0.48 16 46 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.10 1.65 7.57 -51.93 -0.39 1.25 16 49 H 0.06 1.00 6.65 -51.93 -0.35 0.66 16 50 H 0.41 1.70 9.10 45.56 0.41 2.11 16 LS Contribution 397.36 15.07 5.99 5.99 Total: -1.00 -33.94 397.36 -8.36 -42.30 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.41 Total: 0.79 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -0.06 Total: -7.61 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: -0.37 Total: -34.82 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -1.49 Total: -23.26 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.94 -8.36 -42.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604292057.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.882 kcal (2) G-P(sol) polarization free energy of solvation -33.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds