Wall clock time and date at job start Tue Mar 31 2020 22:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34232 * 116.99764 * 2 1 4 4 O 1.20833 * 120.00009 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00265 * 180.02562 * 3 2 1 6 6 C 1.53962 * 113.58922 * 180.02562 * 5 3 2 7 7 C 1.52792 * 86.78112 * 220.70697 * 6 5 3 8 8 C 1.52800 * 88.10522 * 24.87550 * 7 6 5 9 9 C 1.53470 * 115.58417 * 142.43788 * 7 6 5 10 10 N 1.48789 * 104.33938 * 152.79005 * 9 7 6 11 11 C 1.46910 * 110.99836 * 201.74460 * 10 9 7 12 12 C 1.52996 * 109.46915 * 175.29865 * 11 10 9 13 13 H 1.09002 * 109.47366 * 305.08911 * 12 11 10 14 14 C 1.53004 * 109.47104 * 185.08471 * 12 11 10 15 15 C 1.52998 * 109.47323 * 65.08940 * 12 11 10 16 16 C 1.50700 * 109.47424 * 185.00145 * 15 12 11 17 17 H 1.08005 * 119.99976 * 359.97438 * 16 15 12 18 18 C 1.37876 * 119.99941 * 179.97438 * 16 15 12 19 19 N 1.31514 * 120.00426 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99891 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47141 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47106 * 119.99533 * 20 18 16 23 23 H 1.48501 * 109.47179 * 240.00017 * 20 18 16 24 24 C 1.48646 * 104.39094 * 321.40008 * 10 9 7 25 25 C 1.53353 * 115.65538 * 267.21731 * 7 6 5 26 26 H 1.08997 * 110.39519 * 111.92553 * 25 7 6 27 27 C 1.50697 * 110.39657 * 349.51976 * 25 7 6 28 28 O 1.20825 * 120.00195 * 267.12872 * 27 25 7 29 29 O 1.34226 * 119.99836 * 87.12675 * 27 25 7 30 30 H 1.08998 * 109.47624 * 299.99896 * 1 2 3 31 31 H 1.09002 * 109.47265 * 60.00141 * 1 2 3 32 32 H 1.09005 * 109.47062 * 180.02562 * 1 2 3 33 33 H 1.08998 * 112.88162 * 311.15700 * 5 3 2 34 34 H 1.08992 * 113.66445 * 106.23253 * 6 5 3 35 35 H 1.09000 * 113.74438 * 335.18677 * 6 5 3 36 36 H 1.09011 * 113.66480 * 89.59071 * 8 7 6 37 37 H 1.08998 * 113.66888 * 220.65092 * 8 7 6 38 38 H 1.09001 * 110.45746 * 34.07894 * 9 7 6 39 39 H 1.08999 * 110.46220 * 271.50723 * 9 7 6 40 40 H 1.08999 * 109.46859 * 55.30256 * 11 10 9 41 41 H 1.08997 * 109.46990 * 295.30337 * 11 10 9 42 42 H 1.09003 * 109.46712 * 64.67461 * 14 12 11 43 43 H 1.08998 * 109.47342 * 184.67114 * 14 12 11 44 44 H 1.08996 * 109.47082 * 304.68029 * 14 12 11 45 45 H 1.09002 * 109.46691 * 304.99567 * 15 12 11 46 46 H 1.09001 * 109.47402 * 64.99610 * 15 12 11 47 47 H 0.96997 * 120.00397 * 180.02562 * 19 18 16 48 48 H 1.08995 * 110.40105 * 157.72330 * 24 10 9 49 49 H 1.09001 * 110.39943 * 280.14131 * 24 10 9 50 50 H 0.96704 * 117.00098 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4031 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.1075 2.7164 0.0001 7 6 5.1595 2.2301 -0.9956 8 6 4.1907 1.1195 -1.3992 9 6 5.5292 3.2223 -2.1065 10 7 6.9250 2.8609 -2.4738 11 6 7.6060 3.9872 -3.1265 12 6 9.0688 3.6193 -3.3827 13 1 9.5352 3.3109 -2.4471 14 6 9.8092 4.8343 -3.9456 15 6 9.1367 2.4694 -4.3896 16 6 10.5679 2.0252 -4.5493 17 1 11.3509 2.5146 -3.9890 18 6 10.8777 0.9942 -5.4108 19 7 9.9243 0.3980 -6.0927 20 14 12.6518 0.4442 -5.6092 21 1 13.5265 1.2698 -4.7381 22 1 12.7735 -0.9843 -5.2221 23 1 13.0661 0.6103 -7.0256 24 6 7.5726 2.5249 -1.1788 25 6 6.4863 1.7633 -0.3846 26 1 6.6059 0.6875 -0.5129 27 6 6.5497 2.1295 1.0758 28 8 7.0596 3.1708 1.4160 29 8 6.0396 1.2990 1.9988 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 4.0243 0.6371 0.7552 34 1 4.5229 3.0272 0.9586 35 1 3.4138 3.4459 -0.4178 36 1 3.5194 1.3984 -2.2115 37 1 4.6727 0.1549 -1.5583 38 1 5.4863 4.2455 -1.7332 39 1 4.8660 3.1000 -2.9628 40 1 7.5597 4.8636 -2.4801 41 1 7.1155 4.2084 -4.0744 42 1 9.8325 5.6249 -3.1956 43 1 10.8288 4.5500 -4.2057 44 1 9.2936 5.1934 -4.8362 45 1 8.5354 1.6348 -4.0290 46 1 8.7511 2.8058 -5.3520 47 1 10.1422 -0.3276 -6.6984 48 1 8.4411 1.8870 -1.3425 49 1 7.8617 3.4339 -0.6514 50 1 6.1040 1.5768 2.9228 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604292057.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:21 Heat of formation + Delta-G solvation = -179.922229 kcal Electronic energy + Delta-G solvation = -30931.517370 eV Core-core repulsion = 26730.345914 eV Total energy + Delta-G solvation = -4201.171456 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.73074 -41.37779 -40.15636 -38.60954 -37.41735 -37.14587 -36.00217 -34.17178 -31.94712 -30.00773 -29.01409 -28.46282 -27.14375 -26.70087 -25.42760 -24.87639 -23.38251 -22.12101 -21.41617 -20.57695 -19.39507 -19.02100 -18.76555 -18.43278 -17.77889 -17.65418 -17.38713 -17.23018 -16.54558 -16.36175 -15.99383 -15.42816 -15.23546 -15.03321 -14.75350 -14.37473 -14.31721 -14.09693 -13.97208 -13.67994 -13.45563 -13.40564 -13.32311 -13.02225 -12.88598 -12.76130 -12.67039 -12.56704 -12.48442 -12.25050 -12.17170 -12.11051 -12.02742 -11.80718 -11.78178 -11.49200 -11.42175 -11.31946 -11.21888 -10.93185 -10.79118 -10.43430 -9.31511 -8.07847 -6.15460 1.09915 1.12161 1.41696 1.42949 1.54598 1.75326 1.95915 2.47265 3.05204 3.18908 3.24302 3.25141 3.37465 3.52355 3.61242 3.94899 4.07118 4.20140 4.24270 4.25564 4.31870 4.33608 4.35237 4.48976 4.55005 4.56995 4.61113 4.69826 4.72420 4.73568 4.80463 4.84321 4.87406 4.92855 4.98041 4.99920 5.03931 5.22097 5.32109 5.36799 5.45150 5.52438 5.57825 5.69816 5.89632 5.95677 6.06489 6.15347 6.42008 6.70060 6.97309 7.02544 7.51284 9.03559 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.002757 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.395291 B =10153.887905 C =10676.244515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.475 3.525 4 O -0.537 6.537 5 C -0.102 4.102 6 C -0.105 4.105 7 C -0.067 4.067 8 C -0.093 4.093 9 C 0.046 3.954 10 N -0.511 5.511 11 C 0.062 3.938 12 C -0.080 4.080 13 H 0.051 0.949 14 C -0.130 4.130 15 C 0.047 3.953 16 C -0.526 4.526 17 H 0.054 0.946 18 C 0.001 3.999 19 N -0.930 5.930 20 Si 0.952 3.048 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.282 1.282 24 C 0.047 3.953 25 C -0.067 4.067 26 H 0.133 0.867 27 C 0.502 3.498 28 O -0.543 6.543 29 O -0.503 6.503 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.130 0.870 33 H 0.150 0.850 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.051 0.949 39 H 0.093 0.907 40 H 0.040 0.960 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.046 0.954 44 H 0.047 0.953 45 H 0.008 0.992 46 H -0.020 1.020 47 H 0.259 0.741 48 H 0.077 0.923 49 H 0.054 0.946 50 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.077 0.099 16.622 23.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.320 3.680 4 O -0.427 6.427 5 C -0.121 4.121 6 C -0.142 4.142 7 C -0.068 4.068 8 C -0.130 4.130 9 C -0.081 4.081 10 N -0.234 5.234 11 C -0.066 4.066 12 C -0.099 4.099 13 H 0.070 0.930 14 C -0.188 4.188 15 C 0.010 3.990 16 C -0.564 4.564 17 H 0.072 0.928 18 C -0.196 4.196 19 N -0.571 5.571 20 Si 0.777 3.223 21 H -0.190 1.190 22 H -0.206 1.206 23 H -0.208 1.208 24 C -0.081 4.081 25 C -0.086 4.086 26 H 0.151 0.849 27 C 0.345 3.655 28 O -0.434 6.434 29 O -0.316 6.316 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.148 0.852 33 H 0.167 0.833 34 H 0.092 0.908 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.121 0.879 38 H 0.069 0.931 39 H 0.111 0.889 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.026 0.974 46 H -0.001 1.001 47 H 0.068 0.932 48 H 0.096 0.904 49 H 0.072 0.928 50 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -17.204 -0.028 15.806 23.363 hybrid contribution 0.806 0.632 0.655 1.216 sum -16.398 0.605 16.461 23.243 Atomic orbital electron populations 1.23547 0.75023 1.05663 1.02453 1.86533 1.24821 1.32875 1.83442 1.23886 0.92194 0.81088 0.70854 1.90650 1.67767 1.37413 1.46879 1.22701 0.86287 1.00429 1.02640 1.22961 0.96822 0.95459 0.98991 1.21626 0.91913 0.97441 0.95813 1.22887 0.96204 0.99779 0.94109 1.23064 0.90775 0.96876 0.97424 1.65458 1.02069 1.36321 1.19552 1.22272 0.94839 0.90878 0.98625 1.21116 0.93522 0.96452 0.98779 0.93039 1.21655 1.00378 0.96650 1.00109 1.18849 0.94619 0.93135 0.92368 1.21730 0.94817 1.16398 1.23496 0.92798 1.25828 1.00927 0.96929 0.95895 1.70110 1.33794 1.24778 1.28460 0.85603 0.80731 0.78125 0.77793 1.18983 1.20599 1.20830 1.23053 0.96380 0.99474 0.89234 1.21519 0.96097 1.04539 0.86465 0.84875 1.22988 0.72555 0.80590 0.89327 1.90724 1.43348 1.26653 1.82649 1.84488 1.74242 1.50538 1.22356 0.91889 0.92122 0.85197 0.83257 0.90849 0.88205 0.88504 0.87946 0.93092 0.88851 0.94216 0.91180 0.92272 0.93488 0.93435 0.97368 1.00114 0.93190 0.90418 0.92778 0.70935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.55 113.37 1.20 1.52 16 2 O -0.36 -6.40 10.57 -51.44 -0.54 -6.95 16 3 C 0.48 9.52 7.48 71.23 0.53 10.05 16 4 O -0.54 -13.68 15.64 21.94 0.34 -13.33 16 5 C -0.10 -1.69 4.00 -10.90 -0.04 -1.74 16 6 C -0.10 -1.98 6.22 30.85 0.19 -1.79 16 7 C -0.07 -1.39 1.13 -52.05 -0.06 -1.45 16 8 C -0.09 -1.64 6.86 30.85 0.21 -1.43 16 9 C 0.05 1.15 5.91 86.09 0.51 1.66 16 10 N -0.51 -16.29 4.82 -881.96 -4.25 -20.55 16 11 C 0.06 2.10 4.31 86.30 0.37 2.47 16 12 C -0.08 -3.24 2.19 -10.79 -0.02 -3.26 16 13 H 0.05 2.13 6.69 -2.39 -0.02 2.11 16 14 C -0.13 -4.82 9.07 71.98 0.65 -4.17 16 15 C 0.05 2.46 4.39 29.85 0.13 2.59 16 16 C -0.53 -29.59 8.34 25.60 0.21 -29.38 16 17 H 0.05 2.95 7.08 -2.91 -0.02 2.93 16 18 C 0.00 0.08 5.46 84.65 0.46 0.54 16 19 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 20 Si 0.95 44.62 29.54 68.60 2.03 46.65 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 24 C 0.05 1.40 4.82 86.52 0.42 1.82 16 25 C -0.07 -1.51 3.16 -10.87 -0.03 -1.54 16 26 H 0.13 2.68 7.77 -2.39 -0.02 2.66 16 27 C 0.50 10.68 5.13 71.23 0.37 11.05 16 28 O -0.54 -15.21 16.33 21.97 0.36 -14.85 16 29 O -0.50 -6.78 12.14 -51.38 -0.62 -7.41 16 30 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 31 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 32 H 0.13 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.15 2.02 7.04 -2.39 -0.02 2.01 16 34 H 0.07 1.40 6.10 -2.39 -0.01 1.38 16 35 H 0.10 2.05 7.42 -2.39 -0.02 2.03 16 36 H 0.10 1.72 7.92 -2.38 -0.02 1.70 16 37 H 0.10 1.68 7.88 -2.39 -0.02 1.66 16 38 H 0.05 1.25 7.87 -2.39 -0.02 1.23 16 39 H 0.09 2.23 7.84 -2.39 -0.02 2.21 16 40 H 0.04 1.22 7.98 -2.39 -0.02 1.20 16 41 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.05 1.90 6.83 -2.39 -0.02 1.88 16 44 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.01 0.45 7.62 -2.39 -0.02 0.43 16 46 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 47 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 48 H 0.08 2.64 7.57 -2.39 -0.02 2.63 16 49 H 0.05 1.72 6.65 -2.39 -0.02 1.70 16 50 H 0.43 2.31 9.10 -74.05 -0.67 1.64 16 Total: -1.00 -73.89 397.36 2.96 -70.93 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.27 Total: 14.88 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 5.10 Total: -13.05 kcal Atomic # 7 Polarization: -72.90 SS G_CDS: -3.97 Total: -76.87 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -0.47 Total: -42.54 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -73.89 2.96 -70.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604292057.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.996 kcal (2) G-P(sol) polarization free energy of solvation -73.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds