Wall clock time and date at job start Tue Mar 31 2020 22:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47060 * 2 1 4 4 C 1.50696 * 109.47256 * 239.99644 * 2 1 3 5 5 H 1.08000 * 120.00020 * 240.00486 * 4 2 1 6 6 C 1.37876 * 120.00097 * 59.99539 * 4 2 1 7 7 N 1.31516 * 119.99915 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00144 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47241 * 90.00464 * 8 6 4 10 10 H 1.48503 * 109.46842 * 210.00498 * 8 6 4 11 11 H 1.48505 * 109.47034 * 330.00096 * 8 6 4 12 12 O 1.45206 * 109.47126 * 119.99537 * 2 1 3 13 13 C 1.34227 * 116.99741 * 270.00249 * 12 2 1 14 14 O 1.20826 * 120.00307 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99770 * 180.02562 * 13 12 2 16 16 H 1.09000 * 110.53761 * 61.15716 * 15 13 12 17 17 C 1.54886 * 110.48471 * 298.54689 * 15 13 12 18 18 C 1.54894 * 102.74684 * 203.37986 * 17 15 13 19 19 H 1.08997 * 110.48025 * 279.12929 * 18 17 15 20 20 N 1.46494 * 110.48646 * 156.61823 * 18 17 15 21 21 C 1.34780 * 120.00166 * 86.45274 * 20 18 17 22 22 O 1.21513 * 119.99577 * 359.97438 * 21 20 18 23 23 O 1.34628 * 120.00286 * 179.97438 * 21 20 18 24 24 C 1.45202 * 117.00407 * 179.97438 * 23 21 20 25 25 C 1.53006 * 109.46867 * 59.99955 * 24 23 21 26 26 C 1.52999 * 109.47019 * 300.00782 * 24 23 21 27 27 C 1.52997 * 109.47464 * 180.02562 * 24 23 21 28 28 C 1.54267 * 104.19435 * 37.94139 * 18 17 15 29 29 H 1.08995 * 117.41239 * 116.37692 * 28 18 17 30 30 C 1.53005 * 118.19544 * 272.21201 * 28 18 17 31 31 C 1.52995 * 60.37834 * 93.61878 * 30 28 18 32 32 H 1.08996 * 119.29972 * 112.24000 * 31 30 28 33 33 H 1.09002 * 109.47407 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47247 * 299.99978 * 1 2 3 35 35 H 1.08993 * 109.47519 * 60.00224 * 1 2 3 36 36 H 0.97000 * 120.00506 * 179.97438 * 7 6 4 37 37 H 1.08993 * 110.75924 * 85.06219 * 17 15 13 38 38 H 1.09006 * 110.75384 * 321.68976 * 17 15 13 39 39 H 0.97000 * 120.00376 * 266.45490 * 20 18 17 40 40 H 1.09001 * 109.46801 * 300.00397 * 25 24 23 41 41 H 1.09001 * 109.46998 * 59.99993 * 25 24 23 42 42 H 1.09000 * 109.47050 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.47160 * 179.97438 * 26 24 23 44 44 H 1.09002 * 109.46719 * 299.99410 * 26 24 23 45 45 H 1.08993 * 109.47839 * 59.99251 * 26 24 23 46 46 H 1.09001 * 109.47375 * 300.00043 * 27 24 23 47 47 H 1.09002 * 109.46777 * 60.00599 * 27 24 23 48 48 H 1.09000 * 109.47140 * 180.02562 * 27 24 23 49 49 H 1.09003 * 117.46103 * 346.01866 * 30 28 18 50 50 H 1.09006 * 117.43970 * 201.22746 * 30 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2396 -2.4827 7 7 0.9434 0.8300 -2.6034 8 14 2.3213 -1.1206 -4.0078 9 1 1.3427 -2.1620 -4.4117 10 1 2.4865 -0.1417 -5.1122 11 1 3.6293 -1.7586 -3.7120 12 8 2.0140 -0.6844 1.1857 13 6 2.2171 0.0642 2.2811 14 8 1.9981 1.2521 2.2503 15 6 2.7193 -0.5768 3.5493 16 1 3.6983 -1.0280 3.3880 17 6 1.7107 -1.6370 4.0570 18 6 2.0394 -1.7253 5.5681 19 1 2.9072 -2.3639 5.7329 20 7 0.8844 -2.2287 6.3155 21 6 0.6962 -3.5564 6.4513 22 8 1.4843 -4.3357 5.9533 23 8 -0.3650 -4.0190 7.1385 24 6 -0.5048 -5.4605 7.2438 25 6 0.7244 -6.0422 7.9448 26 6 -0.6267 -6.0646 5.8434 27 6 -1.7596 -5.7935 8.0534 28 6 2.3518 -0.2698 5.9730 29 1 1.6892 0.2026 6.6981 30 6 3.7896 0.2305 5.8195 31 6 2.7842 0.4604 4.6894 32 1 2.4589 1.4758 4.4632 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8900 35 1 -0.3634 0.5138 -0.8899 36 1 0.7093 1.1615 -3.4844 37 1 1.8798 -2.5963 3.5682 38 1 0.6856 -1.2994 3.9038 39 1 0.2550 -1.6066 6.7127 40 1 1.6181 -5.8050 7.3676 41 1 0.8114 -5.6118 8.9425 42 1 0.6197 -7.1243 8.0234 43 1 -0.7312 -7.1467 5.9223 44 1 -1.5024 -5.6501 5.3439 45 1 0.2669 -5.8274 5.2662 46 1 -1.6732 -5.3631 9.0511 47 1 -2.6351 -5.3791 7.5534 48 1 -1.8643 -6.8755 8.1327 49 1 4.5669 -0.5161 5.6566 50 1 4.0863 1.0959 6.4121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646845767.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:03 Heat of formation + Delta-G solvation = -151.092545 kcal Electronic energy + Delta-G solvation = -30321.137736 eV Core-core repulsion = 26121.216430 eV Total energy + Delta-G solvation = -4199.921307 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.07761 -40.28893 -38.85854 -37.25787 -35.65545 -34.70775 -33.89457 -33.27548 -31.61836 -29.53487 -27.91604 -27.67297 -27.58968 -25.31659 -23.64192 -22.54233 -22.31305 -20.85056 -20.46887 -19.96601 -19.15293 -18.23247 -17.46778 -16.66680 -16.57379 -16.26853 -16.01599 -15.31821 -15.09224 -14.81045 -14.59647 -14.39856 -14.31333 -14.09845 -13.64817 -13.25013 -12.92695 -12.78456 -12.73003 -12.38169 -12.21909 -12.15644 -12.12584 -11.82879 -11.69586 -11.62390 -11.52495 -11.50357 -11.19471 -11.06626 -10.88270 -10.83069 -10.58460 -10.50010 -10.36530 -10.27334 -10.17848 -9.87608 -9.66772 -9.51884 -9.23847 -8.90370 -8.48799 -6.18020 -4.24789 1.96333 2.69898 2.97738 3.25355 3.30459 3.34169 3.43874 3.57977 3.91180 4.20696 4.33299 4.46570 4.51074 4.65455 4.73199 4.77230 4.88996 5.07697 5.14070 5.15265 5.20177 5.22837 5.29098 5.33698 5.36685 5.42874 5.50163 5.55420 5.61085 5.62912 5.72706 5.80309 5.86024 5.97705 6.05851 6.10173 6.13047 6.22702 6.32367 6.37408 6.64106 6.88447 6.91575 7.17766 7.25901 7.60528 7.72975 7.94106 8.14719 8.23974 8.64387 8.89483 9.40729 10.89452 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.012031 B = 0.002640 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.819868 B =10603.291259 C =12123.423560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H 0.046 0.954 4 C -0.520 4.520 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.353 6.353 13 C 0.463 3.537 14 O -0.520 6.520 15 C -0.061 4.061 16 H 0.112 0.888 17 C -0.119 4.119 18 C 0.190 3.810 19 H 0.102 0.898 20 N -0.701 5.701 21 C 0.651 3.349 22 O -0.564 6.564 23 O -0.366 6.366 24 C 0.137 3.863 25 C -0.183 4.183 26 C -0.185 4.185 27 C -0.141 4.141 28 C -0.180 4.180 29 H 0.119 0.881 30 C -0.141 4.141 31 C -0.143 4.143 32 H 0.134 0.866 33 H 0.036 0.964 34 H 0.015 0.985 35 H 0.099 0.901 36 H 0.266 0.734 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.406 0.594 40 H 0.088 0.912 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.090 0.910 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.080 0.920 49 H 0.097 0.903 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.419 -9.194 23.518 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.163 3.837 3 H 0.064 0.936 4 C -0.558 4.558 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.269 6.269 13 C 0.306 3.694 14 O -0.410 6.410 15 C -0.080 4.080 16 H 0.130 0.870 17 C -0.157 4.157 18 C 0.086 3.914 19 H 0.120 0.880 20 N -0.359 5.359 21 C 0.404 3.596 22 O -0.453 6.453 23 O -0.281 6.281 24 C 0.100 3.900 25 C -0.240 4.240 26 C -0.243 4.243 27 C -0.198 4.198 28 C -0.199 4.199 29 H 0.137 0.863 30 C -0.178 4.178 31 C -0.161 4.161 32 H 0.151 0.849 33 H 0.055 0.945 34 H 0.034 0.966 35 H 0.117 0.883 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.241 0.759 40 H 0.107 0.893 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.108 0.892 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.099 0.901 49 H 0.116 0.884 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.249 -9.211 23.079 24.881 hybrid contribution -0.190 0.033 -0.753 0.777 sum -1.439 -9.178 22.326 24.182 Atomic orbital electron populations 1.22155 0.97613 1.00066 1.01344 1.20630 0.91350 0.93889 0.77848 0.93604 1.21035 1.32449 1.13446 0.88908 0.91294 1.24890 0.94951 0.95087 0.99077 1.69900 1.36165 1.22546 1.24155 0.86273 0.79332 0.79133 0.81404 1.20354 1.20973 1.19597 1.86494 1.75593 1.43571 1.21263 1.22937 0.74835 0.85795 0.85860 1.90574 1.48846 1.16943 1.84638 1.21291 1.01113 0.95545 0.90100 0.87036 1.23033 0.99551 0.99249 0.93898 1.21380 0.87448 0.92776 0.89765 0.87993 1.44666 1.29544 1.03840 1.57888 1.18061 0.80210 0.83642 0.77644 1.90916 1.46848 1.55345 1.52203 1.86290 1.45189 1.27245 1.69409 1.22070 0.96496 0.74803 0.96640 1.22519 0.99228 1.01347 1.00941 1.22531 1.04504 1.01214 0.96004 1.21863 0.95762 1.02118 1.00050 1.23368 0.99810 0.94432 1.02288 0.86292 1.23098 0.91415 1.02879 1.00394 1.23207 1.04629 1.00465 0.87787 0.84850 0.94470 0.96612 0.88253 0.92416 0.89022 0.90148 0.75894 0.89276 0.92291 0.91163 0.91157 0.92028 0.89157 0.91568 0.91411 0.90145 0.88417 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 9.33 37.16 0.35 -3.61 16 2 C 0.22 5.83 2.56 -27.89 -0.07 5.76 16 3 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 4 C -0.52 -14.77 8.90 -34.44 -0.31 -15.07 16 5 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.46 11.32 55.43 0.63 -24.83 16 8 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 O -0.35 -8.45 9.84 -39.25 -0.39 -8.83 16 13 C 0.46 9.57 7.23 36.01 0.26 9.83 16 14 O -0.52 -12.05 14.74 -18.75 -0.28 -12.32 16 15 C -0.06 -0.90 3.16 -90.11 -0.28 -1.18 16 16 H 0.11 1.49 8.14 -51.93 -0.42 1.06 16 17 C -0.12 -1.61 5.97 -24.74 -0.15 -1.75 16 18 C 0.19 2.06 2.95 -66.27 -0.20 1.86 16 19 H 0.10 1.15 7.66 -51.93 -0.40 0.75 16 20 N -0.70 -7.23 5.18 -57.11 -0.30 -7.52 16 21 C 0.65 7.97 8.05 54.06 0.44 8.40 16 22 O -0.56 -8.11 11.59 -19.28 -0.22 -8.34 16 23 O -0.37 -4.08 9.94 -40.29 -0.40 -4.48 16 24 C 0.14 1.28 1.13 -90.62 -0.10 1.18 16 25 C -0.18 -1.63 8.37 37.16 0.31 -1.32 16 26 C -0.19 -1.84 8.37 37.16 0.31 -1.52 16 27 C -0.14 -0.95 8.85 37.16 0.33 -0.62 16 28 C -0.18 -1.73 6.52 -89.50 -0.58 -2.31 16 29 H 0.12 0.95 8.02 -51.93 -0.42 0.53 16 30 C -0.14 -1.28 10.07 -26.73 -0.27 -1.55 16 31 C -0.14 -1.76 6.20 -89.50 -0.55 -2.32 16 32 H 0.13 1.89 7.06 -51.93 -0.37 1.52 16 33 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.10 2.71 6.07 -51.93 -0.32 2.40 16 36 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 39 H 0.41 3.32 8.63 -40.82 -0.35 2.97 16 40 H 0.09 1.00 5.88 -51.93 -0.31 0.69 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.09 1.12 5.88 -51.93 -0.31 0.82 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 402.83 15.07 6.07 6.07 Total: -1.00 -32.32 402.83 -8.81 -41.14 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -8.29 Total: 5.47 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -0.62 Total: -2.59 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.33 Total: -32.35 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -1.29 Total: -33.98 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.32 -8.81 -41.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646845767.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.957 kcal (2) G-P(sol) polarization free energy of solvation -32.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds