Wall clock time and date at job start Tue Mar 31 2020 22:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47060 * 2 1 4 4 C 1.50696 * 109.47256 * 239.99644 * 2 1 3 5 5 H 1.08000 * 120.00020 * 240.00486 * 4 2 1 6 6 C 1.37876 * 120.00097 * 59.99539 * 4 2 1 7 7 N 1.31516 * 119.99915 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00144 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47241 * 90.00464 * 8 6 4 10 10 H 1.48503 * 109.46842 * 210.00498 * 8 6 4 11 11 H 1.48505 * 109.47034 * 330.00096 * 8 6 4 12 12 O 1.45206 * 109.47126 * 119.99537 * 2 1 3 13 13 C 1.34227 * 116.99741 * 270.00249 * 12 2 1 14 14 O 1.20826 * 120.00307 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99770 * 180.02562 * 13 12 2 16 16 H 1.09000 * 110.53761 * 61.15716 * 15 13 12 17 17 C 1.54886 * 110.48471 * 298.54689 * 15 13 12 18 18 C 1.54894 * 102.74684 * 203.37986 * 17 15 13 19 19 H 1.08997 * 110.48025 * 279.12929 * 18 17 15 20 20 N 1.46494 * 110.48646 * 156.61823 * 18 17 15 21 21 C 1.34780 * 120.00166 * 86.45274 * 20 18 17 22 22 O 1.21513 * 119.99577 * 359.97438 * 21 20 18 23 23 O 1.34628 * 120.00286 * 179.97438 * 21 20 18 24 24 C 1.45202 * 117.00407 * 179.97438 * 23 21 20 25 25 C 1.53006 * 109.46867 * 59.99955 * 24 23 21 26 26 C 1.52999 * 109.47019 * 300.00782 * 24 23 21 27 27 C 1.52997 * 109.47464 * 180.02562 * 24 23 21 28 28 C 1.54267 * 104.19435 * 37.94139 * 18 17 15 29 29 H 1.08995 * 117.41239 * 116.37692 * 28 18 17 30 30 C 1.53005 * 118.19544 * 272.21201 * 28 18 17 31 31 C 1.52995 * 60.37834 * 93.61878 * 30 28 18 32 32 H 1.08996 * 119.29972 * 112.24000 * 31 30 28 33 33 H 1.09002 * 109.47407 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47247 * 299.99978 * 1 2 3 35 35 H 1.08993 * 109.47519 * 60.00224 * 1 2 3 36 36 H 0.97000 * 120.00506 * 179.97438 * 7 6 4 37 37 H 1.08993 * 110.75924 * 85.06219 * 17 15 13 38 38 H 1.09006 * 110.75384 * 321.68976 * 17 15 13 39 39 H 0.97000 * 120.00376 * 266.45490 * 20 18 17 40 40 H 1.09001 * 109.46801 * 300.00397 * 25 24 23 41 41 H 1.09001 * 109.46998 * 59.99993 * 25 24 23 42 42 H 1.09000 * 109.47050 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.47160 * 179.97438 * 26 24 23 44 44 H 1.09002 * 109.46719 * 299.99410 * 26 24 23 45 45 H 1.08993 * 109.47839 * 59.99251 * 26 24 23 46 46 H 1.09001 * 109.47375 * 300.00043 * 27 24 23 47 47 H 1.09002 * 109.46777 * 60.00599 * 27 24 23 48 48 H 1.09000 * 109.47140 * 180.02562 * 27 24 23 49 49 H 1.09003 * 117.46103 * 346.01866 * 30 28 18 50 50 H 1.09006 * 117.43970 * 201.22746 * 30 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2396 -2.4827 7 7 0.9434 0.8300 -2.6034 8 14 2.3213 -1.1206 -4.0078 9 1 1.3427 -2.1620 -4.4117 10 1 2.4865 -0.1417 -5.1122 11 1 3.6293 -1.7586 -3.7120 12 8 2.0140 -0.6844 1.1857 13 6 2.2171 0.0642 2.2811 14 8 1.9981 1.2521 2.2503 15 6 2.7193 -0.5768 3.5493 16 1 3.6983 -1.0280 3.3880 17 6 1.7107 -1.6370 4.0570 18 6 2.0394 -1.7253 5.5681 19 1 2.9072 -2.3639 5.7329 20 7 0.8844 -2.2287 6.3155 21 6 0.6962 -3.5564 6.4513 22 8 1.4843 -4.3357 5.9533 23 8 -0.3650 -4.0190 7.1385 24 6 -0.5048 -5.4605 7.2438 25 6 0.7244 -6.0422 7.9448 26 6 -0.6267 -6.0646 5.8434 27 6 -1.7596 -5.7935 8.0534 28 6 2.3518 -0.2698 5.9730 29 1 1.6892 0.2026 6.6981 30 6 3.7896 0.2305 5.8195 31 6 2.7842 0.4604 4.6894 32 1 2.4589 1.4758 4.4632 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8900 35 1 -0.3634 0.5138 -0.8899 36 1 0.7093 1.1615 -3.4844 37 1 1.8798 -2.5963 3.5682 38 1 0.6856 -1.2994 3.9038 39 1 0.2550 -1.6066 6.7127 40 1 1.6181 -5.8050 7.3676 41 1 0.8114 -5.6118 8.9425 42 1 0.6197 -7.1243 8.0234 43 1 -0.7312 -7.1467 5.9223 44 1 -1.5024 -5.6501 5.3439 45 1 0.2669 -5.8274 5.2662 46 1 -1.6732 -5.3631 9.0511 47 1 -2.6351 -5.3791 7.5534 48 1 -1.8643 -6.8755 8.1327 49 1 4.5669 -0.5161 5.6566 50 1 4.0863 1.0959 6.4121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646845767.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:02 Heat of formation + Delta-G solvation = -170.052502 kcal Electronic energy + Delta-G solvation = -30321.959902 eV Core-core repulsion = 26121.216430 eV Total energy + Delta-G solvation = -4200.743472 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.07112 -41.55228 -40.24094 -38.16782 -37.50637 -35.62999 -35.36862 -34.67678 -32.83197 -31.53189 -29.01658 -28.32981 -28.26258 -27.49179 -24.82420 -23.97493 -23.19041 -22.21147 -21.63408 -20.96761 -20.44132 -19.11594 -19.02752 -18.50967 -17.87958 -17.34508 -17.16720 -16.91341 -16.62978 -16.02360 -15.86327 -15.38924 -15.29893 -15.17048 -14.71228 -14.43552 -14.24056 -14.12542 -14.05615 -13.54058 -13.32108 -13.22030 -13.09392 -12.95675 -12.88818 -12.83725 -12.82914 -12.73738 -12.53719 -12.44698 -12.41999 -12.28991 -12.18338 -11.89982 -11.61061 -11.39748 -11.34262 -11.33294 -11.06635 -11.02158 -10.75146 -10.62112 -10.22578 -8.31389 -6.48457 1.10807 1.31480 1.40024 1.42266 1.53436 1.76314 1.97127 2.39166 2.56685 2.99046 3.09913 3.23644 3.59748 3.78224 3.83040 3.86491 3.94769 3.97911 4.04819 4.11125 4.20563 4.28405 4.42979 4.48017 4.53541 4.58415 4.64885 4.73113 4.74108 4.79674 4.79836 4.86897 4.90445 4.91309 4.95378 4.97837 5.09421 5.13934 5.16421 5.26406 5.31884 5.34480 5.42503 5.45935 5.59316 5.60464 5.89009 6.06588 6.40795 6.56756 6.94212 7.23701 7.35288 8.76449 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.012031 B = 0.002640 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.819868 B =10603.291259 C =12123.423560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.218 3.782 3 H 0.007 0.993 4 C -0.550 4.550 5 H 0.066 0.934 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.983 3.017 9 H -0.267 1.267 10 H -0.276 1.276 11 H -0.265 1.265 12 O -0.363 6.363 13 C 0.456 3.544 14 O -0.549 6.549 15 C -0.052 4.052 16 H 0.128 0.872 17 C -0.116 4.116 18 C 0.199 3.801 19 H 0.104 0.896 20 N -0.692 5.692 21 C 0.647 3.353 22 O -0.589 6.589 23 O -0.369 6.369 24 C 0.126 3.874 25 C -0.178 4.178 26 C -0.183 4.183 27 C -0.136 4.136 28 C -0.158 4.158 29 H 0.143 0.857 30 C -0.115 4.115 31 C -0.173 4.173 32 H 0.112 0.888 33 H 0.043 0.957 34 H 0.022 0.978 35 H 0.082 0.918 36 H 0.271 0.729 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.418 0.582 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.073 0.927 47 H 0.066 0.934 48 H 0.101 0.899 49 H 0.110 0.890 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.117 -10.508 25.371 27.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.587 4.587 5 H 0.084 0.916 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.806 3.194 9 H -0.192 1.192 10 H -0.201 1.201 11 H -0.190 1.190 12 O -0.279 6.279 13 C 0.301 3.699 14 O -0.440 6.440 15 C -0.071 4.071 16 H 0.146 0.854 17 C -0.155 4.155 18 C 0.095 3.905 19 H 0.122 0.878 20 N -0.351 5.351 21 C 0.400 3.600 22 O -0.479 6.479 23 O -0.283 6.283 24 C 0.089 3.911 25 C -0.235 4.235 26 C -0.241 4.241 27 C -0.193 4.193 28 C -0.177 4.177 29 H 0.161 0.839 30 C -0.152 4.152 31 C -0.191 4.191 32 H 0.131 0.869 33 H 0.062 0.938 34 H 0.041 0.959 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.255 0.745 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.085 0.915 48 H 0.120 0.880 49 H 0.128 0.872 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.967 -10.513 24.972 27.112 hybrid contribution -0.310 0.463 -1.291 1.407 sum -1.276 -10.050 23.681 25.757 Atomic orbital electron populations 1.21971 0.96853 1.00220 1.00796 1.20326 0.91946 0.92032 0.79255 0.97481 1.21299 1.33499 1.13906 0.90036 0.91574 1.25843 0.94692 0.95656 1.02157 1.70013 1.36576 1.23590 1.25274 0.85177 0.79022 0.78132 0.77057 1.19206 1.20085 1.18966 1.86492 1.76055 1.43836 1.21544 1.24155 0.73735 0.85639 0.86396 1.90551 1.50026 1.18367 1.85059 1.21407 1.01642 0.96454 0.87601 0.85388 1.22990 0.98451 0.97948 0.96141 1.21207 0.87617 0.93875 0.87777 0.87768 1.44581 1.29610 1.03563 1.57345 1.18257 0.80238 0.83951 0.77534 1.90913 1.47747 1.56104 1.53169 1.86305 1.44544 1.28500 1.69000 1.22402 0.98074 0.73881 0.96708 1.22464 0.97788 1.02648 1.00645 1.22502 1.02784 1.02654 0.96125 1.21885 0.94069 1.03555 0.99767 1.23436 1.01067 0.92687 1.00477 0.83937 1.23280 0.91030 1.03609 0.97285 1.23026 1.09028 0.98978 0.88092 0.86949 0.93798 0.95863 0.89976 0.91926 0.90363 0.91507 0.74497 0.91855 0.91561 0.89243 0.89107 0.92443 0.92030 0.90829 0.91517 0.88038 0.87192 0.85303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.48 9.33 71.98 0.67 -6.80 16 2 C 0.22 12.32 2.56 29.85 0.08 12.40 16 3 H 0.01 0.47 7.16 -2.39 -0.02 0.45 16 4 C -0.55 -32.04 8.90 25.60 0.23 -31.81 16 5 H 0.07 3.79 7.81 -2.91 -0.02 3.76 16 6 C 0.02 0.91 5.30 84.65 0.45 1.36 16 7 N -0.92 -53.43 11.32 21.45 0.24 -53.18 16 8 Si 0.98 43.60 29.54 68.60 2.03 45.62 16 9 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 10 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 11 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 12 O -0.36 -18.10 9.84 -51.39 -0.51 -18.60 16 13 C 0.46 19.59 7.23 71.24 0.52 20.11 16 14 O -0.55 -26.67 14.74 21.96 0.32 -26.34 16 15 C -0.05 -1.53 3.16 -10.46 -0.03 -1.56 16 16 H 0.13 3.35 8.14 -2.39 -0.02 3.33 16 17 C -0.12 -3.17 5.97 31.89 0.19 -2.98 16 18 C 0.20 4.04 2.95 46.07 0.14 4.17 16 19 H 0.10 2.16 7.66 -2.39 -0.02 2.14 16 20 N -0.69 -13.34 5.18 -565.00 -2.93 -16.27 16 21 C 0.65 15.41 8.05 129.79 1.05 16.46 16 22 O -0.59 -16.98 11.59 19.80 0.23 -16.75 16 23 O -0.37 -7.84 9.94 -55.38 -0.55 -8.40 16 24 C 0.13 2.20 1.13 -10.79 -0.01 2.18 16 25 C -0.18 -2.92 8.37 71.98 0.60 -2.32 16 26 C -0.18 -3.53 8.37 71.98 0.60 -2.93 16 27 C -0.14 -1.51 8.85 71.98 0.64 -0.88 16 28 C -0.16 -2.62 6.52 -10.07 -0.07 -2.69 16 29 H 0.14 1.76 8.02 -2.39 -0.02 1.74 16 30 C -0.12 -1.73 10.07 30.59 0.31 -1.43 16 31 C -0.17 -4.10 6.20 -10.07 -0.06 -4.16 16 32 H 0.11 3.21 7.06 -2.39 -0.02 3.19 16 33 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.08 4.65 6.07 -2.39 -0.01 4.63 16 36 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 37 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.07 1.99 8.05 -2.38 -0.02 1.97 16 39 H 0.42 6.05 8.63 -92.71 -0.80 5.24 16 40 H 0.06 1.40 5.88 -2.39 -0.01 1.39 16 41 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.06 1.57 5.88 -2.39 -0.01 1.55 16 46 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.13 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -73.19 402.83 4.27 -68.92 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.14 Total: 25.90 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 5.29 Total: -0.89 kcal Atomic # 7 Polarization: -66.77 SS G_CDS: -2.69 Total: -69.46 kcal Atomic # 8 Polarization: -69.59 SS G_CDS: -0.50 Total: -70.09 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -73.19 4.27 -68.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646845767.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.132 kcal (2) G-P(sol) polarization free energy of solvation -73.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds