Wall clock time and date at job start Tue Mar 31 2020 22:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47179 * 2 1 4 4 C 1.50697 * 109.47253 * 120.00351 * 2 1 3 5 5 H 1.08007 * 119.99887 * 119.99834 * 4 2 1 6 6 C 1.37873 * 120.00237 * 300.00534 * 4 2 1 7 7 N 1.31520 * 119.99988 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00070 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47657 * 89.99430 * 8 6 4 10 10 H 1.48496 * 109.47180 * 209.99590 * 8 6 4 11 11 H 1.48503 * 109.47226 * 329.99396 * 8 6 4 12 12 O 1.45203 * 109.47013 * 240.00858 * 2 1 3 13 13 C 1.34229 * 117.00394 * 89.99631 * 12 2 1 14 14 O 1.20829 * 119.99873 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00104 * 179.97438 * 13 12 2 16 16 H 1.09003 * 110.43419 * 61.09208 * 15 13 12 17 17 C 1.54888 * 110.48586 * 298.54855 * 15 13 12 18 18 C 1.54897 * 102.74764 * 203.37969 * 17 15 13 19 19 H 1.09000 * 110.48216 * 279.26347 * 18 17 15 20 20 N 1.46495 * 110.48460 * 156.62621 * 18 17 15 21 21 C 1.34769 * 120.00623 * 86.45299 * 20 18 17 22 22 O 1.21516 * 119.99733 * 0.02562 * 21 20 18 23 23 O 1.34641 * 120.00568 * 179.97438 * 21 20 18 24 24 C 1.45196 * 117.00165 * 180.02562 * 23 21 20 25 25 C 1.52999 * 109.47345 * 60.00134 * 24 23 21 26 26 C 1.53002 * 109.46853 * 180.02562 * 24 23 21 27 27 C 1.53002 * 109.47019 * 299.99878 * 24 23 21 28 28 C 1.54264 * 104.19493 * 37.94423 * 18 17 15 29 29 H 1.09000 * 117.41471 * 116.37063 * 28 18 17 30 30 C 1.53003 * 118.19739 * 272.21225 * 28 18 17 31 31 C 1.53001 * 60.37830 * 93.61522 * 30 28 18 32 32 H 1.09000 * 119.29513 * 112.24431 * 31 30 28 33 33 H 1.09002 * 109.46881 * 59.98983 * 1 2 3 34 34 H 1.08997 * 109.46988 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.46697 * 299.99809 * 1 2 3 36 36 H 0.96993 * 119.99908 * 180.02562 * 7 6 4 37 37 H 1.08999 * 110.75516 * 85.06839 * 17 15 13 38 38 H 1.09001 * 110.75836 * 321.69199 * 17 15 13 39 39 H 0.97008 * 119.99629 * 266.45017 * 20 18 17 40 40 H 1.08997 * 109.46990 * 59.99815 * 25 24 23 41 41 H 1.08998 * 109.47243 * 179.97438 * 25 24 23 42 42 H 1.09004 * 109.46811 * 300.00145 * 25 24 23 43 43 H 1.08996 * 109.47295 * 59.99816 * 26 24 23 44 44 H 1.08998 * 109.46815 * 180.02562 * 26 24 23 45 45 H 1.09006 * 109.47014 * 299.99631 * 26 24 23 46 46 H 1.08997 * 109.46862 * 60.00607 * 27 24 23 47 47 H 1.08998 * 109.46756 * 179.97438 * 27 24 23 48 48 H 1.08996 * 109.47335 * 300.00311 * 27 24 23 49 49 H 1.08997 * 117.46223 * 346.01644 * 30 28 18 50 50 H 1.08999 * 117.44055 * 201.22832 * 30 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9435 0.8299 2.6035 8 14 2.3226 -1.1199 4.0078 9 1 3.6306 -0.5444 4.4118 10 1 1.3446 -0.9495 5.1121 11 1 2.4881 -2.5657 3.7119 12 8 2.0140 -0.6843 -1.1857 13 6 2.2171 0.0642 -2.2812 14 8 1.9981 1.2521 -2.2503 15 6 2.7192 -0.5767 -3.5493 16 1 2.0119 -1.3271 -3.9024 17 6 4.1136 -1.2111 -3.3207 18 6 4.7090 -1.2522 -4.7501 19 1 4.3235 -2.1112 -5.2992 20 7 6.1723 -1.2919 -4.6950 21 6 6.8106 -2.4730 -4.5775 22 8 6.1722 -3.5052 -4.5177 23 8 8.1556 -2.5095 -4.5274 24 6 8.7753 -3.8165 -4.4010 25 6 8.3849 -4.6841 -5.5992 26 6 10.2965 -3.6577 -4.3597 27 6 8.2976 -4.4847 -3.1102 28 6 4.2284 0.0628 -5.3979 29 1 4.9897 0.7875 -5.6866 30 6 2.8697 0.0678 -6.1014 31 6 2.9633 0.4923 -4.6344 32 1 2.7732 1.5316 -4.3668 33 1 -0.3633 0.5140 -0.8899 34 1 -0.3633 -1.0276 -0.0005 35 1 -0.3633 0.5138 0.8900 36 1 0.7094 1.1614 3.4845 37 1 4.0180 -2.2175 -2.9130 38 1 4.7207 -0.5845 -2.6673 39 1 6.6820 -0.4679 -4.7431 40 1 8.7253 -4.2080 -6.5188 41 1 8.8506 -5.6650 -5.5046 42 1 7.3012 -4.7971 -5.6282 43 1 10.5743 -3.0397 -3.5059 44 1 10.7617 -4.6388 -4.2653 45 1 10.6372 -3.1814 -5.2791 46 1 7.2139 -4.5979 -3.1393 47 1 8.7625 -5.4661 -3.0156 48 1 8.5757 -3.8667 -2.2566 49 1 2.4118 -0.8976 -6.3171 50 1 2.6895 0.8486 -6.8402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646845769.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:06 Heat of formation + Delta-G solvation = -151.122417 kcal Electronic energy + Delta-G solvation = -30348.877894 eV Core-core repulsion = 26148.955292 eV Total energy + Delta-G solvation = -4199.922602 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.05675 -40.27832 -38.85396 -37.23833 -35.65360 -34.68590 -33.87363 -33.27569 -31.61173 -29.51935 -27.91189 -27.65304 -27.56702 -25.31705 -23.63413 -22.53744 -22.30164 -20.79533 -20.46016 -19.96866 -19.17415 -18.21212 -17.45292 -16.65049 -16.51739 -16.24415 -16.00548 -15.43746 -15.07312 -14.78273 -14.57503 -14.38929 -14.22629 -14.09668 -13.62289 -13.23923 -13.02041 -12.74976 -12.68653 -12.36949 -12.14056 -12.10311 -12.06305 -11.96866 -11.66994 -11.59578 -11.50457 -11.48181 -11.18667 -11.05881 -10.87935 -10.85788 -10.56447 -10.48284 -10.34289 -10.27853 -10.15863 -9.87144 -9.64577 -9.54149 -9.21890 -8.89829 -8.48787 -6.18120 -4.24836 1.98621 2.72214 2.97781 3.24910 3.30245 3.34270 3.44348 3.58128 3.93167 4.21616 4.33120 4.48704 4.53263 4.67608 4.73880 4.77856 4.90282 5.08913 5.14498 5.16261 5.22080 5.23974 5.31195 5.35046 5.38260 5.44742 5.51479 5.56806 5.60858 5.65235 5.74790 5.81071 5.86245 5.99697 6.07706 6.12319 6.15990 6.23819 6.34291 6.39634 6.64707 6.89190 6.91986 7.18035 7.28203 7.60599 7.73267 7.94232 8.14794 8.26247 8.64367 8.89479 9.40690 10.89361 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.010046 B = 0.002976 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.618993 B = 9405.793938 C =11699.382992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.046 0.954 4 C -0.520 4.520 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.911 3.089 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.353 6.353 13 C 0.463 3.537 14 O -0.520 6.520 15 C -0.060 4.060 16 H 0.111 0.889 17 C -0.119 4.119 18 C 0.190 3.810 19 H 0.102 0.898 20 N -0.701 5.701 21 C 0.652 3.348 22 O -0.565 6.565 23 O -0.366 6.366 24 C 0.137 3.863 25 C -0.183 4.183 26 C -0.141 4.141 27 C -0.186 4.186 28 C -0.180 4.180 29 H 0.119 0.881 30 C -0.141 4.141 31 C -0.143 4.143 32 H 0.134 0.866 33 H 0.016 0.984 34 H 0.037 0.963 35 H 0.099 0.901 36 H 0.266 0.734 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.406 0.594 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.090 0.910 47 H 0.069 0.931 48 H 0.061 0.939 49 H 0.097 0.903 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.967 -6.460 -18.798 24.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.163 3.837 3 H 0.063 0.937 4 C -0.558 4.558 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.738 3.262 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.196 1.196 12 O -0.269 6.269 13 C 0.305 3.695 14 O -0.410 6.410 15 C -0.080 4.080 16 H 0.129 0.871 17 C -0.158 4.158 18 C 0.086 3.914 19 H 0.120 0.880 20 N -0.359 5.359 21 C 0.405 3.595 22 O -0.454 6.454 23 O -0.281 6.281 24 C 0.100 3.900 25 C -0.240 4.240 26 C -0.198 4.198 27 C -0.243 4.243 28 C -0.199 4.199 29 H 0.137 0.863 30 C -0.178 4.178 31 C -0.161 4.161 32 H 0.152 0.848 33 H 0.035 0.965 34 H 0.056 0.944 35 H 0.118 0.882 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.100 0.900 39 H 0.241 0.759 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.108 0.892 47 H 0.088 0.912 48 H 0.080 0.920 49 H 0.116 0.884 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.565 -6.582 -18.532 23.891 hybrid contribution 0.436 0.154 0.946 1.053 sum 14.001 -6.428 -17.586 23.380 Atomic orbital electron populations 1.22161 0.97571 1.00120 1.01398 1.20630 0.91388 0.93858 0.77843 0.93652 1.21032 1.32406 1.13459 0.88909 0.91321 1.24886 0.94925 0.95118 0.99065 1.69901 1.36109 1.22600 1.24148 0.86282 0.78539 0.79959 0.81427 1.20412 1.20939 1.19554 1.86493 1.75571 1.43576 1.21286 1.22945 0.74696 0.85844 0.85969 1.90575 1.48879 1.16946 1.84607 1.21287 0.98452 0.97422 0.90846 0.87137 1.23040 0.93450 1.02690 0.96576 1.21375 0.76650 0.97428 0.95912 0.88030 1.44655 1.06901 1.06863 1.77486 1.18057 0.80967 0.84445 0.76055 1.90913 1.67081 1.32097 1.55271 1.86293 1.19590 1.35957 1.86265 1.22067 0.92385 0.79095 0.96464 1.22516 1.05089 0.99614 0.96801 1.21863 0.91526 1.03085 1.03320 1.22532 1.05006 1.00787 0.95947 1.23372 0.92088 0.98573 1.05827 0.86280 1.23095 0.96957 1.03364 0.94398 1.23208 1.01313 1.00896 0.90699 0.84849 0.96528 0.94413 0.88248 0.92418 0.89012 0.89992 0.75871 0.92307 0.91177 0.89278 0.91393 0.90160 0.91579 0.89155 0.91174 0.91988 0.88448 0.87652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.33 37.16 0.35 -3.62 16 2 C 0.22 5.83 2.56 -27.88 -0.07 5.76 16 3 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 4 C -0.52 -14.75 8.90 -34.44 -0.31 -15.06 16 5 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.45 11.32 55.43 0.63 -24.82 16 8 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 O -0.35 -8.45 9.84 -39.25 -0.39 -8.83 16 13 C 0.46 9.56 7.23 36.00 0.26 9.82 16 14 O -0.52 -12.05 14.74 -18.75 -0.28 -12.32 16 15 C -0.06 -0.89 3.16 -90.12 -0.28 -1.18 16 16 H 0.11 1.45 8.14 -51.93 -0.42 1.02 16 17 C -0.12 -1.65 5.97 -24.73 -0.15 -1.79 16 18 C 0.19 2.10 2.95 -66.27 -0.20 1.90 16 19 H 0.10 1.16 7.67 -51.93 -0.40 0.76 16 20 N -0.70 -7.42 5.18 -57.11 -0.30 -7.72 16 21 C 0.65 8.16 8.05 54.05 0.44 8.60 16 22 O -0.56 -8.27 11.59 -19.28 -0.22 -8.49 16 23 O -0.37 -4.19 9.94 -40.33 -0.40 -4.59 16 24 C 0.14 1.32 1.13 -90.62 -0.10 1.22 16 25 C -0.18 -1.66 8.37 37.16 0.31 -1.35 16 26 C -0.14 -0.99 8.85 37.16 0.33 -0.66 16 27 C -0.19 -1.91 8.37 37.16 0.31 -1.60 16 28 C -0.18 -1.74 6.52 -89.50 -0.58 -2.33 16 29 H 0.12 0.97 8.02 -51.93 -0.42 0.55 16 30 C -0.14 -1.28 10.07 -26.73 -0.27 -1.55 16 31 C -0.14 -1.77 6.20 -89.50 -0.55 -2.32 16 32 H 0.13 1.89 7.06 -51.93 -0.37 1.53 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.10 2.71 6.07 -51.93 -0.32 2.40 16 36 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 38 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 39 H 0.41 3.44 8.63 -40.82 -0.35 3.09 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 1.02 5.88 -51.93 -0.31 0.71 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.09 1.16 5.88 -51.93 -0.31 0.85 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 402.83 15.07 6.07 6.07 Total: -1.00 -32.33 402.83 -8.81 -41.14 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -8.29 Total: 5.83 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -0.62 Total: -2.53 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.33 Total: -32.54 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -1.29 Total: -34.23 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.33 -8.81 -41.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646845769.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.981 kcal (2) G-P(sol) polarization free energy of solvation -32.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds