Wall clock time and date at job start Tue Mar 31 2020 22:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50699 * 109.47337 * 295.00177 * 4 2 1 6 6 N 1.29437 * 124.80409 * 90.02146 * 5 4 2 7 7 C 1.30943 * 117.36295 * 179.97438 * 6 5 4 8 8 C 1.35656 * 114.19185 * 0.02562 * 7 6 5 9 9 C 1.46690 * 126.13138 * 180.02562 * 8 7 6 10 10 O 1.21681 * 120.00227 * 179.97438 * 9 8 7 11 11 N 1.34780 * 119.99647 * 359.97272 * 9 8 7 12 12 C 1.46491 * 119.99678 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47395 * 34.99949 * 12 11 9 14 14 C 1.53004 * 109.47081 * 275.00071 * 12 11 9 15 15 C 1.52997 * 109.47148 * 155.00636 * 12 11 9 16 16 C 1.53007 * 109.46594 * 294.99682 * 15 12 11 17 17 C 1.53006 * 109.47147 * 180.02562 * 16 15 12 18 18 N 1.46497 * 109.47191 * 180.02562 * 17 16 15 19 19 C 1.36939 * 119.99869 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00000 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99672 * 179.97438 * 19 18 17 22 22 N 1.31615 * 120.00339 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99671 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47056 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.46982 * 120.00362 * 23 21 19 26 26 H 1.48506 * 109.46780 * 240.00020 * 23 21 19 27 27 S 1.70949 * 124.80396 * 269.72222 * 5 4 2 28 28 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 31 31 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 32 32 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 33 33 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 35 35 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 36 36 H 1.09004 * 109.46881 * 174.99844 * 4 2 1 37 37 H 1.07996 * 122.90064 * 180.02562 * 7 6 5 38 38 H 0.96999 * 119.99690 * 0.02562 * 11 9 8 39 39 H 1.09002 * 109.47098 * 180.02562 * 14 12 11 40 40 H 1.08998 * 109.46906 * 300.00177 * 14 12 11 41 41 H 1.08997 * 109.47126 * 60.00325 * 14 12 11 42 42 H 1.09000 * 109.47836 * 54.99472 * 15 12 11 43 43 H 1.08999 * 109.47612 * 174.99962 * 15 12 11 44 44 H 1.09003 * 109.47319 * 299.99800 * 16 15 12 45 45 H 1.09000 * 109.47167 * 60.00339 * 16 15 12 46 46 H 1.09003 * 109.46781 * 300.00047 * 17 16 15 47 47 H 1.09000 * 109.46877 * 60.00080 * 17 16 15 48 48 H 0.96998 * 119.99743 * 359.97438 * 18 17 16 49 49 H 0.96997 * 120.00429 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 -2.1733 -1.1889 6 7 0.5380 -2.6568 -1.6623 7 6 0.3396 -3.9444 -1.5305 8 6 1.3458 -4.6002 -0.9000 9 6 1.3960 -6.0383 -0.6151 10 8 2.3585 -6.5115 -0.0404 11 7 0.3760 -6.8355 -0.9900 12 6 0.4259 -8.2716 -0.7050 13 1 0.9266 -8.4355 0.2492 14 6 1.1990 -8.9854 -1.8158 15 6 -0.9978 -8.8276 -0.6363 16 6 -1.7318 -8.2043 0.5528 17 6 -3.1554 -8.7608 0.6220 18 7 -3.8583 -8.1635 1.7601 19 6 -5.1558 -8.5132 2.0235 20 1 -5.6610 -9.2290 1.3920 21 6 -5.8217 -7.9476 3.1022 22 7 -5.2062 -7.0749 3.8715 23 14 -7.5919 -8.4241 3.4612 24 1 -8.0516 -9.4147 2.4549 25 1 -7.6787 -9.0198 4.8186 26 1 -8.4529 -7.2159 3.3948 27 16 2.5857 -3.4163 -0.4919 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6055 -0.2618 -2.1370 36 1 3.1264 -0.6443 -1.2951 37 1 -0.5484 -4.4411 -1.8925 38 1 -0.3911 -6.4583 -1.4485 39 1 1.2357 -10.0540 -1.6040 40 1 0.6984 -8.8215 -2.7700 41 1 2.2133 -8.5893 -1.8649 42 1 -1.5275 -8.5855 -1.5576 43 1 -0.9596 -9.9099 -0.5128 44 1 -1.2022 -8.4464 1.4742 45 1 -1.7700 -7.1220 0.4293 46 1 -3.6852 -8.5190 -0.2994 47 1 -3.1167 -9.8430 0.7457 48 1 -3.4044 -7.5209 2.3275 49 1 -5.6714 -6.6799 4.6255 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649475697.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:42 Heat of formation + Delta-G solvation = -35.078681 kcal Electronic energy + Delta-G solvation = -26379.991161 eV Core-core repulsion = 22660.146215 eV Total energy + Delta-G solvation = -3719.844946 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.38175 -40.43194 -37.99871 -37.30184 -36.53531 -34.28092 -33.10634 -31.74875 -30.75798 -29.06978 -27.99260 -27.24398 -25.51608 -24.85910 -23.42607 -22.37165 -21.87968 -21.28942 -20.78966 -19.16053 -19.07053 -18.39354 -17.26837 -16.67645 -16.47745 -16.04066 -15.92504 -15.80537 -15.64456 -15.37174 -15.23799 -15.02557 -14.86266 -14.50404 -14.31506 -13.85157 -13.51191 -13.44267 -13.20127 -13.06611 -13.03719 -12.81776 -12.75473 -12.61410 -12.40546 -12.24365 -12.13047 -12.06306 -11.88241 -11.83397 -11.76776 -11.64491 -11.52077 -11.41767 -10.95576 -10.64015 -10.56658 -10.22225 -9.91732 -9.01820 -7.97018 -5.26441 -0.84009 0.08472 0.61307 1.35207 1.45973 1.47217 1.57439 2.07318 2.16375 2.54612 2.99487 3.36869 3.57442 3.72894 3.78616 3.91319 3.95963 3.98655 4.08882 4.11918 4.27035 4.30768 4.39028 4.57227 4.63419 4.65955 4.67683 4.79656 4.81759 4.84930 4.85484 4.89897 4.93410 4.98621 5.02583 5.10405 5.12099 5.27156 5.30377 5.33340 5.42020 5.42121 5.45377 5.49601 5.51008 6.25559 6.36204 6.54048 7.04101 7.30904 8.08265 8.29933 9.26998 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008806 B = 0.002527 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.836107 B =11078.221757 C =13709.071927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.142 4.142 4 C -0.044 4.044 5 C 0.060 3.940 6 N -0.494 5.494 7 C 0.104 3.896 8 C -0.325 4.325 9 C 0.595 3.405 10 O -0.578 6.578 11 N -0.699 5.699 12 C 0.145 3.855 13 H 0.068 0.932 14 C -0.154 4.154 15 C -0.109 4.109 16 C -0.114 4.114 17 C 0.150 3.850 18 N -0.751 5.751 19 C -0.245 4.245 20 H 0.078 0.922 21 C -0.080 4.080 22 N -0.972 5.972 23 Si 0.976 3.024 24 H -0.264 1.264 25 H -0.293 1.293 26 H -0.292 1.292 27 S 0.222 5.778 28 H 0.062 0.938 29 H 0.035 0.965 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.199 0.801 38 H 0.412 0.588 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.043 0.957 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.045 0.955 45 H 0.056 0.944 46 H 0.027 0.973 47 H 0.021 0.979 48 H 0.371 0.629 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.373 12.090 -16.373 28.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.109 4.109 3 C -0.199 4.199 4 C -0.085 4.085 5 C -0.214 4.214 6 N -0.208 5.208 7 C -0.055 4.055 8 C -0.449 4.449 9 C 0.381 3.619 10 O -0.460 6.460 11 N -0.351 5.351 12 C 0.041 3.959 13 H 0.086 0.914 14 C -0.213 4.213 15 C -0.147 4.147 16 C -0.152 4.152 17 C 0.024 3.976 18 N -0.394 5.394 19 C -0.377 4.377 20 H 0.096 0.904 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.804 3.196 24 H -0.188 1.188 25 H -0.221 1.221 26 H -0.219 1.219 27 S 0.481 5.519 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.216 0.784 38 H 0.249 0.751 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.062 0.938 42 H 0.109 0.891 43 H 0.113 0.887 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.045 0.955 47 H 0.039 0.961 48 H 0.202 0.798 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 20.543 11.964 -15.782 28.534 hybrid contribution -2.133 -0.365 0.453 2.211 sum 18.410 11.598 -15.329 26.616 Atomic orbital electron populations 1.21854 0.95519 1.01116 1.02070 1.21132 0.95828 0.97497 0.96468 1.21798 1.01773 0.93699 1.02673 1.20693 1.03082 0.83693 1.01010 1.28084 0.92946 1.02928 0.97393 1.66238 1.19979 1.12749 1.21875 1.22523 0.98944 0.88539 0.95475 1.25692 1.03398 0.99493 1.16331 1.16900 0.82810 0.84240 0.77926 1.90809 1.34488 1.76604 1.44072 1.45822 1.21180 1.08666 1.59394 1.21068 0.96992 0.78502 0.99383 0.91421 1.22105 0.99482 1.01168 0.98508 1.21767 0.92776 1.01693 0.98470 1.21608 0.94635 1.00210 0.98760 1.20866 0.91718 0.95515 0.89539 1.42674 1.11961 1.51858 1.32876 1.19717 0.89966 1.19213 1.08768 0.90401 1.25638 1.02846 1.00192 0.98534 1.69835 1.38240 1.34197 1.20022 0.85039 0.79669 0.77324 0.77537 1.18774 1.22055 1.21947 1.84014 1.19248 0.96476 1.52165 0.91904 0.94538 0.92637 0.91414 0.92234 0.91133 0.91662 0.87530 0.86864 0.78411 0.75074 0.89930 0.90722 0.93789 0.89096 0.88681 0.93588 0.92569 0.95527 0.96095 0.79788 0.94033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 8.99 71.98 0.65 -1.79 16 2 C -0.09 -1.10 2.91 -10.79 -0.03 -1.13 16 3 C -0.14 -1.19 9.19 71.98 0.66 -0.53 16 4 C -0.04 -0.51 5.27 29.85 0.16 -0.35 16 5 C 0.06 1.09 5.88 88.46 0.52 1.61 16 6 N -0.49 -10.54 9.74 -190.31 -1.85 -12.39 16 7 C 0.10 2.17 10.93 84.23 0.92 3.09 16 8 C -0.32 -7.65 6.48 23.88 0.15 -7.49 16 9 C 0.59 16.04 7.75 86.45 0.67 16.71 16 10 O -0.58 -19.68 16.63 -4.29 -0.07 -19.75 16 11 N -0.70 -15.19 4.51 -446.51 -2.02 -17.20 16 12 C 0.14 3.13 2.57 44.99 0.12 3.25 16 13 H 0.07 1.82 7.58 -2.39 -0.02 1.81 16 14 C -0.15 -2.73 9.48 71.98 0.68 -2.05 16 15 C -0.11 -2.28 4.75 30.60 0.15 -2.13 16 16 C -0.11 -3.51 5.22 30.60 0.16 -3.35 16 17 C 0.15 5.84 6.26 86.38 0.54 6.38 16 18 N -0.75 -39.16 5.60 -343.44 -1.92 -41.08 16 19 C -0.24 -13.93 9.99 84.03 0.84 -13.09 16 20 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 21 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 22 N -0.97 -60.94 13.06 21.65 0.28 -60.65 16 23 Si 0.98 46.69 29.55 68.60 2.03 48.71 16 24 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 25 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 27 S 0.22 4.47 23.01 -56.49 -1.30 3.17 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.04 0.77 6.80 -2.39 -0.02 0.76 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.20 3.09 7.15 -2.91 -0.02 3.07 16 38 H 0.41 6.99 7.31 -92.71 -0.68 6.31 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.06 1.77 7.75 -2.39 -0.02 1.75 16 46 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.37 20.80 7.67 -92.71 -0.71 20.09 16 49 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -75.10 415.29 1.35 -73.75 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: -0.45 Total: 30.57 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 6.65 Total: -5.11 kcal Atomic # 7 Polarization: -125.82 SS G_CDS: -5.51 Total: -131.33 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.07 Total: -19.75 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Atomic # 16 Polarization: 4.47 SS G_CDS: -1.30 Total: 3.17 kcal Total: -75.10 1.35 -73.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649475697.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.668 kcal (2) G-P(sol) polarization free energy of solvation -75.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds