Wall clock time and date at job start Tue Mar 31 2020 23:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86803 * 119.99895 * 2 1 4 4 H 1.48504 * 109.47118 * 239.99951 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00057 * 3 2 1 7 7 C 1.40028 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.41318 * 119.99754 * 0.27874 * 7 2 1 10 10 C 1.40586 * 119.78079 * 179.71798 * 9 7 2 11 11 C 1.38349 * 119.14321 * 179.97438 * 10 9 7 12 12 C 1.38631 * 118.68316 * 0.02562 * 11 10 9 13 13 C 1.39753 * 119.49322 * 0.02562 * 12 11 10 14 14 N 1.38826 * 119.58651 * 180.02562 * 13 12 11 15 15 C 1.46847 * 110.99995 * 56.04477 * 14 13 12 16 16 C 1.53034 * 109.52392 * 185.83803 * 15 14 13 17 17 C 1.53120 * 109.27988 * 300.81936 * 16 15 14 18 18 C 1.53115 * 109.15878 * 57.65481 * 17 16 15 19 19 H 1.08999 * 109.50802 * 62.32608 * 18 17 16 20 20 C 1.50707 * 109.50181 * 182.40410 * 18 17 16 21 21 N 1.30496 * 126.36598 * 59.69105 * 20 18 17 22 22 N 1.28581 * 109.66471 * 179.76318 * 21 20 18 23 23 C 1.30681 * 109.63069 * 0.40244 * 22 21 20 24 24 N 1.35167 * 107.33651 * 359.85983 * 23 22 21 25 25 C 1.46800 * 111.15486 * 179.77033 * 24 23 22 26 26 C 1.54430 * 105.55609 * 17.02796 * 25 24 23 27 27 C 1.51341 * 142.71973 * 179.97438 * 23 22 21 28 28 C 1.46847 * 111.00133 * 180.25335 * 14 13 12 29 29 N 1.31989 * 120.83024 * 359.71595 * 13 12 11 30 30 H 0.97005 * 120.00071 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.43335 * 0.02967 * 10 9 7 32 32 H 1.08008 * 120.65542 * 179.97438 * 11 10 9 33 33 H 1.08001 * 120.25555 * 180.02562 * 12 11 10 34 34 H 1.08995 * 109.46046 * 305.85333 * 15 14 13 35 35 H 1.08993 * 109.46575 * 65.82392 * 15 14 13 36 36 H 1.09007 * 109.50542 * 60.76029 * 16 15 14 37 37 H 1.09004 * 109.50520 * 180.83468 * 16 15 14 38 38 H 1.08999 * 109.52405 * 177.55680 * 17 16 15 39 39 H 1.09000 * 109.52310 * 297.74900 * 17 16 15 40 40 H 1.08998 * 110.22930 * 136.04674 * 25 24 23 41 41 H 1.08994 * 110.22840 * 258.00487 * 25 24 23 42 42 H 1.08997 * 110.96134 * 92.52156 * 26 25 24 43 43 H 1.09000 * 110.95984 * 216.26130 * 26 25 24 44 44 H 1.08999 * 110.47350 * 44.75888 * 27 23 22 45 45 H 1.09004 * 110.58211 * 282.20712 * 27 23 22 46 46 H 1.09007 * 109.46162 * 294.17813 * 28 14 13 47 47 H 1.08994 * 109.46468 * 54.14044 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6965 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0952 1.6965 1.2124 7 6 2.0076 -1.2126 0.0005 8 1 3.0877 -1.2126 0.0001 9 6 1.3011 -2.4365 -0.0049 10 6 2.0087 -3.6513 -0.0103 11 6 1.3036 -4.8417 -0.0150 12 6 -0.0819 -4.7944 -0.0148 13 6 -0.7280 -3.5552 -0.0103 14 7 -2.1154 -3.5056 -0.0095 15 6 -2.6681 -4.2559 1.1254 16 6 -4.1937 -4.3022 1.0135 17 6 -4.7437 -2.8732 1.0059 18 6 -4.1157 -2.0993 -0.1565 19 1 -4.3969 -2.5676 -1.0997 20 6 -4.6068 -0.6746 -0.1359 21 7 -4.4536 0.1827 0.8359 22 7 -4.9932 1.3042 0.5126 23 6 -5.5228 1.2094 -0.6783 24 7 -5.2951 -0.0470 -1.1216 25 6 -5.8639 -0.2479 -2.4599 26 6 -6.1197 1.1691 -3.0181 27 6 -6.2871 1.9946 -1.7222 28 6 -2.5924 -2.1168 -0.0107 29 7 -0.0358 -2.4314 -0.0008 30 1 -0.4850 0.8401 -0.0004 31 1 3.0886 -3.6553 -0.0099 32 1 1.8224 -5.7890 -0.0197 33 1 -0.6575 -5.7082 -0.0180 34 1 -2.2724 -5.2714 1.1167 35 1 -2.3871 -3.7647 2.0569 36 1 -4.4757 -4.8056 0.0887 37 1 -4.6046 -4.8464 1.8639 38 1 -5.8264 -2.9003 0.8827 39 1 -4.4953 -2.3823 1.9468 40 1 -5.1556 -0.7806 -3.0944 41 1 -6.8005 -0.8011 -2.3922 42 1 -5.2651 1.5207 -3.5961 43 1 -7.0302 1.1938 -3.6168 44 1 -5.8549 2.9877 -1.8444 45 1 -7.3402 2.0688 -1.4509 46 1 -2.3116 -1.6356 0.9262 47 1 -2.1415 -1.5787 -0.8444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649756653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:05 Heat of formation + Delta-G solvation = 131.462011 kcal Electronic energy + Delta-G solvation = -30027.507937 eV Core-core repulsion = 26211.733538 eV Total energy + Delta-G solvation = -3815.774400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.22706 -39.34705 -37.49620 -37.13519 -34.11322 -33.14808 -32.25352 -31.05400 -30.25372 -29.16084 -28.80173 -27.32539 -25.66081 -24.08944 -23.39483 -22.63398 -21.30783 -21.07255 -20.90222 -20.04055 -19.03613 -17.49195 -17.08794 -16.40382 -15.91324 -15.00445 -14.86587 -14.73508 -14.42161 -14.29783 -14.14900 -13.90675 -13.66338 -13.61864 -13.37193 -13.28383 -12.83926 -12.66413 -12.16218 -11.97252 -11.94654 -11.73482 -11.64650 -11.22177 -11.14720 -11.03604 -11.01122 -10.73773 -10.66331 -10.55194 -10.23390 -10.19376 -10.05847 -9.95405 -9.91865 -9.38509 -8.74831 -8.67271 -8.00009 -7.56545 -6.94545 -6.36768 -4.48807 1.95405 2.51613 2.77571 3.04735 3.09060 3.12677 3.14000 3.24933 3.65925 3.98483 4.11012 4.30697 4.38631 4.53661 4.65018 4.81760 4.96139 5.05644 5.08835 5.11989 5.24227 5.32843 5.36306 5.43072 5.58482 5.65148 5.72733 5.81857 5.89285 5.96330 6.03214 6.09904 6.12447 6.24276 6.29098 6.36721 6.43017 6.57153 6.65122 6.69192 6.82276 6.96565 6.97766 7.15742 7.18701 7.48343 7.70826 7.81095 7.85342 8.20772 8.38885 8.73703 8.99403 9.01529 10.11522 10.34363 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.009343 B = 0.004644 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.110083 B = 6028.322176 C = 8208.599253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.709 5.709 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.431 4.431 8 H 0.082 0.918 9 C 0.275 3.725 10 C -0.296 4.296 11 C -0.045 4.045 12 C -0.322 4.322 13 C 0.323 3.677 14 N -0.481 5.481 15 C 0.062 3.938 16 C -0.112 4.112 17 C -0.108 4.108 18 C -0.003 4.003 19 H 0.083 0.917 20 C 0.221 3.779 21 N -0.275 5.275 22 N -0.281 5.281 23 C 0.141 3.859 24 N -0.495 5.495 25 C 0.103 3.897 26 C -0.129 4.129 27 C -0.036 4.036 28 C 0.095 3.905 29 N -0.507 5.507 30 H 0.273 0.727 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.064 0.936 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.368 -0.344 -5.920 16.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.329 5.329 2 C -0.155 4.155 3 Si 0.727 3.273 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.462 4.462 8 H 0.100 0.900 9 C 0.149 3.851 10 C -0.319 4.319 11 C -0.069 4.069 12 C -0.347 4.347 13 C 0.084 3.916 14 N -0.200 5.200 15 C -0.066 4.066 16 C -0.150 4.150 17 C -0.146 4.146 18 C -0.025 4.025 19 H 0.102 0.898 20 C -0.045 4.045 21 N -0.113 5.113 22 N -0.121 5.121 23 C -0.127 4.127 24 N -0.187 5.187 25 C -0.020 4.020 26 C -0.168 4.168 27 C -0.076 4.076 28 C -0.033 4.033 29 N -0.225 5.225 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.115 0.885 46 H 0.082 0.918 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.699 0.827 -4.986 16.493 hybrid contribution 0.805 -0.319 -0.685 1.104 sum -14.894 0.507 -5.671 15.945 Atomic orbital electron populations 1.70059 1.06969 1.27829 1.28087 1.26020 0.94905 1.00831 0.93710 0.86461 0.80128 0.80872 0.79810 1.19071 1.20263 1.18920 1.19546 0.94142 0.89367 1.43176 0.89978 1.18304 0.87373 0.91910 0.87517 1.21630 0.98557 0.93499 1.18214 1.20686 0.93599 0.96521 0.96142 1.20647 0.94234 0.95771 1.24091 1.19745 0.87870 0.90545 0.93396 1.59075 1.06091 1.14366 1.40442 1.22120 0.94024 0.98847 0.91559 1.21591 0.95189 0.96050 1.02213 1.21596 0.98952 0.95643 0.98440 1.19808 0.97960 0.84481 1.00242 0.89831 1.24438 0.96924 0.98284 0.84896 1.74453 1.18558 0.96064 1.22254 1.73996 1.11930 1.16584 1.09582 1.25850 1.04003 0.87096 0.95750 1.47197 1.42104 1.13106 1.16315 1.22357 0.99680 0.99569 0.80396 1.22802 1.04381 0.92347 0.97224 1.20574 0.99518 0.98681 0.88865 1.21688 0.88393 0.88218 1.04980 1.68674 1.07903 1.24789 1.21113 0.91616 0.88560 0.88665 0.88736 0.90217 0.94275 0.91226 0.91157 0.92374 0.90723 0.88552 0.89002 0.89174 0.87973 0.88179 0.88452 0.91772 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.08 11.46 55.55 0.64 -18.45 16 2 C 0.07 1.85 5.50 -17.34 -0.10 1.75 16 3 Si 0.90 19.36 29.56 -169.99 -5.02 14.34 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.43 -11.69 9.14 -37.74 -0.34 -12.03 16 8 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 9 C 0.28 7.61 6.55 -85.00 -0.56 7.05 16 10 C -0.30 -7.43 9.83 -38.66 -0.38 -7.81 16 11 C -0.05 -1.03 10.15 -39.40 -0.40 -1.43 16 12 C -0.32 -7.38 9.20 -38.87 -0.36 -7.74 16 13 C 0.32 7.86 6.41 -155.31 -0.99 6.86 16 14 N -0.48 -9.92 4.67 -173.21 -0.81 -10.73 16 15 C 0.06 1.06 5.25 -3.84 -0.02 1.04 16 16 C -0.11 -1.51 6.09 -26.65 -0.16 -1.67 16 17 C -0.11 -1.56 5.27 -26.61 -0.14 -1.70 16 18 C 0.00 -0.05 2.82 -91.69 -0.26 -0.31 16 19 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 20 C 0.22 3.86 6.82 -154.89 -1.06 2.80 16 21 N -0.27 -5.59 12.21 32.82 0.40 -5.19 16 22 N -0.28 -5.39 12.22 32.93 0.40 -4.99 16 23 C 0.14 2.08 8.69 -154.84 -1.35 0.74 16 24 N -0.49 -7.03 3.62 -109.38 -0.40 -7.43 16 25 C 0.10 0.89 7.77 -3.13 -0.02 0.86 16 26 C -0.13 -0.80 7.17 -25.16 -0.18 -0.98 16 27 C -0.04 -0.31 6.85 -26.75 -0.18 -0.49 16 28 C 0.10 1.99 3.91 -3.83 -0.01 1.98 16 29 N -0.51 -13.81 6.16 -10.33 -0.06 -13.88 16 30 H 0.27 7.03 8.29 -40.82 -0.34 6.70 16 31 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 32 H 0.10 1.86 8.06 -52.48 -0.42 1.43 16 33 H 0.09 1.94 7.15 -52.49 -0.38 1.56 16 34 H 0.08 1.31 6.67 -51.93 -0.35 0.96 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 1.57 8.10 -51.92 -0.42 1.14 16 47 H 0.09 2.26 7.71 -51.93 -0.40 1.86 16 LS Contribution 378.22 15.07 5.70 5.70 Total: -1.00 -33.60 378.22 -12.68 -46.27 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -7.01 Total: 5.43 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -6.52 Total: -11.08 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: 0.17 Total: -60.66 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.60 -12.68 -46.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649756653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.736 kcal (2) G-P(sol) polarization free energy of solvation -33.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds