Wall clock time and date at job start Tue Mar 31 2020 23:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86803 * 119.99895 * 2 1 4 4 H 1.48504 * 109.47118 * 239.99951 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00057 * 3 2 1 7 7 C 1.40028 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.41318 * 119.99754 * 0.27874 * 7 2 1 10 10 C 1.40586 * 119.78079 * 179.71798 * 9 7 2 11 11 C 1.38349 * 119.14321 * 179.97438 * 10 9 7 12 12 C 1.38631 * 118.68316 * 0.02562 * 11 10 9 13 13 C 1.39753 * 119.49322 * 0.02562 * 12 11 10 14 14 N 1.38826 * 119.58651 * 180.02562 * 13 12 11 15 15 C 1.46847 * 110.99995 * 56.04477 * 14 13 12 16 16 C 1.53034 * 109.52392 * 185.83803 * 15 14 13 17 17 C 1.53120 * 109.27988 * 300.81936 * 16 15 14 18 18 C 1.53115 * 109.15878 * 57.65481 * 17 16 15 19 19 H 1.08999 * 109.50802 * 62.32608 * 18 17 16 20 20 C 1.50707 * 109.50181 * 182.40410 * 18 17 16 21 21 N 1.30496 * 126.36598 * 59.69105 * 20 18 17 22 22 N 1.28581 * 109.66471 * 179.76318 * 21 20 18 23 23 C 1.30681 * 109.63069 * 0.40244 * 22 21 20 24 24 N 1.35167 * 107.33651 * 359.85983 * 23 22 21 25 25 C 1.46800 * 111.15486 * 179.77033 * 24 23 22 26 26 C 1.54430 * 105.55609 * 17.02796 * 25 24 23 27 27 C 1.51341 * 142.71973 * 179.97438 * 23 22 21 28 28 C 1.46847 * 111.00133 * 180.25335 * 14 13 12 29 29 N 1.31989 * 120.83024 * 359.71595 * 13 12 11 30 30 H 0.97005 * 120.00071 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.43335 * 0.02967 * 10 9 7 32 32 H 1.08008 * 120.65542 * 179.97438 * 11 10 9 33 33 H 1.08001 * 120.25555 * 180.02562 * 12 11 10 34 34 H 1.08995 * 109.46046 * 305.85333 * 15 14 13 35 35 H 1.08993 * 109.46575 * 65.82392 * 15 14 13 36 36 H 1.09007 * 109.50542 * 60.76029 * 16 15 14 37 37 H 1.09004 * 109.50520 * 180.83468 * 16 15 14 38 38 H 1.08999 * 109.52405 * 177.55680 * 17 16 15 39 39 H 1.09000 * 109.52310 * 297.74900 * 17 16 15 40 40 H 1.08998 * 110.22930 * 136.04674 * 25 24 23 41 41 H 1.08994 * 110.22840 * 258.00487 * 25 24 23 42 42 H 1.08997 * 110.96134 * 92.52156 * 26 25 24 43 43 H 1.09000 * 110.95984 * 216.26130 * 26 25 24 44 44 H 1.08999 * 110.47350 * 44.75888 * 27 23 22 45 45 H 1.09004 * 110.58211 * 282.20712 * 27 23 22 46 46 H 1.09007 * 109.46162 * 294.17813 * 28 14 13 47 47 H 1.08994 * 109.46468 * 54.14044 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6965 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0952 1.6965 1.2124 7 6 2.0076 -1.2126 0.0005 8 1 3.0877 -1.2126 0.0001 9 6 1.3011 -2.4365 -0.0049 10 6 2.0087 -3.6513 -0.0103 11 6 1.3036 -4.8417 -0.0150 12 6 -0.0819 -4.7944 -0.0148 13 6 -0.7280 -3.5552 -0.0103 14 7 -2.1154 -3.5056 -0.0095 15 6 -2.6681 -4.2559 1.1254 16 6 -4.1937 -4.3022 1.0135 17 6 -4.7437 -2.8732 1.0059 18 6 -4.1157 -2.0993 -0.1565 19 1 -4.3969 -2.5676 -1.0997 20 6 -4.6068 -0.6746 -0.1359 21 7 -4.4536 0.1827 0.8359 22 7 -4.9932 1.3042 0.5126 23 6 -5.5228 1.2094 -0.6783 24 7 -5.2951 -0.0470 -1.1216 25 6 -5.8639 -0.2479 -2.4599 26 6 -6.1197 1.1691 -3.0181 27 6 -6.2871 1.9946 -1.7222 28 6 -2.5924 -2.1168 -0.0107 29 7 -0.0358 -2.4314 -0.0008 30 1 -0.4850 0.8401 -0.0004 31 1 3.0886 -3.6553 -0.0099 32 1 1.8224 -5.7890 -0.0197 33 1 -0.6575 -5.7082 -0.0180 34 1 -2.2724 -5.2714 1.1167 35 1 -2.3871 -3.7647 2.0569 36 1 -4.4757 -4.8056 0.0887 37 1 -4.6046 -4.8464 1.8639 38 1 -5.8264 -2.9003 0.8827 39 1 -4.4953 -2.3823 1.9468 40 1 -5.1556 -0.7806 -3.0944 41 1 -6.8005 -0.8011 -2.3922 42 1 -5.2651 1.5207 -3.5961 43 1 -7.0302 1.1938 -3.6168 44 1 -5.8549 2.9877 -1.8444 45 1 -7.3402 2.0688 -1.4509 46 1 -2.3116 -1.6356 0.9262 47 1 -2.1415 -1.5787 -0.8444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649756653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:04 Heat of formation + Delta-G solvation = 112.016694 kcal Electronic energy + Delta-G solvation = -30028.351150 eV Core-core repulsion = 26211.733538 eV Total energy + Delta-G solvation = -3816.617612 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.39869 -41.02809 -39.08953 -38.14713 -35.83754 -34.84925 -33.51743 -32.45372 -31.87151 -30.68960 -30.22071 -28.36733 -27.53493 -25.58150 -24.92744 -23.53278 -22.92308 -22.58114 -22.07989 -21.49306 -20.39327 -19.36154 -18.18068 -17.83086 -17.19199 -16.69469 -16.45773 -16.32008 -15.81871 -15.63843 -15.52355 -15.41181 -15.01867 -14.75260 -14.40304 -14.28413 -14.24998 -13.99316 -13.80446 -13.66949 -13.25869 -12.89561 -12.81421 -12.67557 -12.62677 -12.47851 -12.45615 -12.37229 -12.17831 -11.91894 -11.86863 -11.62273 -11.56151 -11.29429 -11.24593 -10.94061 -10.50257 -10.02474 -9.94346 -9.50691 -8.81621 -8.31246 -6.53114 0.79287 0.87520 1.18082 1.32046 1.44620 1.47818 1.53357 1.80256 2.16028 2.70005 2.79967 2.96352 3.31487 3.47581 3.67617 3.77366 3.86411 3.94176 3.98659 4.03180 4.09468 4.24763 4.35748 4.40167 4.49183 4.50856 4.54198 4.56368 4.71892 4.80888 4.81536 4.84048 4.89539 4.91613 4.93426 4.98107 5.03400 5.07016 5.08958 5.15725 5.20379 5.26522 5.32153 5.41577 5.64388 5.86399 5.90751 5.95770 5.99190 6.27764 6.46426 6.76473 7.03234 7.73586 8.16632 8.38389 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.009343 B = 0.004644 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.110083 B = 6028.322176 C = 8208.599253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.026 3.974 3 Si 0.977 3.023 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.467 4.467 8 H 0.088 0.912 9 C 0.241 3.759 10 C -0.318 4.318 11 C -0.042 4.042 12 C -0.316 4.316 13 C 0.300 3.700 14 N -0.473 5.473 15 C 0.058 3.942 16 C -0.099 4.099 17 C -0.102 4.102 18 C 0.009 3.991 19 H 0.106 0.894 20 C 0.206 3.794 21 N -0.326 5.326 22 N -0.340 5.340 23 C 0.147 3.853 24 N -0.495 5.495 25 C 0.087 3.913 26 C -0.114 4.114 27 C -0.036 4.036 28 C 0.121 3.879 29 N -0.537 5.537 30 H 0.267 0.733 31 H 0.107 0.893 32 H 0.137 0.863 33 H 0.127 0.873 34 H 0.095 0.905 35 H 0.013 0.987 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.048 0.952 40 H 0.098 0.902 41 H 0.123 0.877 42 H 0.086 0.914 43 H 0.148 0.852 44 H 0.108 0.892 45 H 0.127 0.873 46 H 0.015 0.985 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.745 -1.720 -7.880 19.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.196 4.196 3 Si 0.798 3.202 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.499 4.499 8 H 0.106 0.894 9 C 0.114 3.886 10 C -0.341 4.341 11 C -0.066 4.066 12 C -0.341 4.341 13 C 0.062 3.938 14 N -0.192 5.192 15 C -0.068 4.068 16 C -0.137 4.137 17 C -0.140 4.140 18 C -0.013 4.013 19 H 0.124 0.876 20 C -0.063 4.063 21 N -0.164 5.164 22 N -0.180 5.180 23 C -0.122 4.122 24 N -0.187 5.187 25 C -0.033 4.033 26 C -0.152 4.152 27 C -0.076 4.076 28 C -0.008 4.008 29 N -0.255 5.255 30 H 0.077 0.923 31 H 0.125 0.875 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.113 0.887 35 H 0.031 0.969 36 H 0.110 0.890 37 H 0.121 0.879 38 H 0.106 0.894 39 H 0.067 0.933 40 H 0.116 0.884 41 H 0.141 0.859 42 H 0.105 0.895 43 H 0.166 0.834 44 H 0.127 0.873 45 H 0.145 0.855 46 H 0.033 0.967 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.090 -0.584 -6.964 19.393 hybrid contribution 1.493 -0.006 -0.123 1.498 sum -16.598 -0.591 -7.087 18.057 Atomic orbital electron populations 1.70247 1.08497 1.28037 1.29400 1.26905 0.95657 1.04220 0.92796 0.85336 0.78633 0.75889 0.80363 1.17698 1.20376 1.18150 1.19880 0.94624 0.90317 1.45063 0.89390 1.18800 0.88113 0.93341 0.88316 1.21825 0.99286 0.93708 1.19256 1.21130 0.93764 0.97410 0.94276 1.21043 0.94725 0.96243 1.22079 1.20346 0.89591 0.90751 0.93075 1.59221 1.04291 1.14096 1.41580 1.22324 0.97020 0.98421 0.89081 1.21593 0.91683 0.95623 1.04783 1.21570 1.00543 0.95744 0.96163 1.19711 0.94385 0.84931 1.02234 0.87627 1.24442 0.97750 0.98387 0.85673 1.74306 1.20143 0.97231 1.24739 1.73828 1.14537 1.16940 1.12685 1.26996 1.01993 0.88207 0.94982 1.47543 1.41131 1.12477 1.17520 1.22935 1.00732 1.01903 0.77695 1.22901 1.06505 0.89634 0.96113 1.20982 1.00209 0.98546 0.87837 1.21215 0.91486 0.87643 1.00435 1.68662 1.08205 1.26678 1.21994 0.92292 0.87533 0.84561 0.85541 0.88703 0.96856 0.89022 0.87895 0.89414 0.93321 0.88356 0.85879 0.89491 0.83375 0.87330 0.85483 0.96675 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -42.96 11.46 21.84 0.25 -42.71 16 2 C 0.03 1.44 5.50 85.29 0.47 1.91 16 3 Si 0.98 41.62 29.56 68.60 2.03 43.65 16 4 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.47 -26.68 9.14 23.46 0.21 -26.47 16 8 H 0.09 4.69 7.85 -2.91 -0.02 4.67 16 9 C 0.24 13.97 6.55 40.19 0.26 14.24 16 10 C -0.32 -16.24 9.83 22.87 0.22 -16.02 16 11 C -0.04 -1.85 10.15 22.39 0.23 -1.62 16 12 C -0.32 -14.16 9.20 22.73 0.21 -13.95 16 13 C 0.30 15.02 6.41 133.40 0.85 15.88 16 14 N -0.47 -19.90 4.67 -701.92 -3.28 -23.18 16 15 C 0.06 1.95 5.25 86.32 0.45 2.41 16 16 C -0.10 -2.40 6.09 30.65 0.19 -2.22 16 17 C -0.10 -2.86 5.27 30.67 0.16 -2.70 16 18 C 0.01 0.29 2.82 -11.49 -0.03 0.26 16 19 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 20 C 0.21 7.47 6.82 137.95 0.94 8.41 16 21 N -0.33 -14.25 12.21 -50.09 -0.61 -14.86 16 22 N -0.34 -13.83 12.22 -49.74 -0.61 -14.44 16 23 C 0.15 4.36 8.69 138.24 1.20 5.56 16 24 N -0.50 -13.85 3.62 -499.98 -1.81 -15.66 16 25 C 0.09 1.26 7.77 86.81 0.67 1.94 16 26 C -0.11 -0.97 7.17 31.61 0.23 -0.74 16 27 C -0.04 -0.52 6.85 30.58 0.21 -0.31 16 28 C 0.12 5.40 3.91 86.33 0.34 5.74 16 29 N -0.54 -30.96 6.16 -186.59 -1.15 -32.11 16 30 H 0.27 14.97 8.29 -92.70 -0.77 14.20 16 31 H 0.11 5.05 8.06 -2.91 -0.02 5.02 16 32 H 0.14 4.88 8.06 -2.91 -0.02 4.86 16 33 H 0.13 4.79 7.15 -2.91 -0.02 4.77 16 34 H 0.09 2.91 6.67 -2.39 -0.02 2.89 16 35 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.15 0.00 8.14 -2.39 -0.02 -0.02 16 44 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.01 0.80 8.10 -2.38 -0.02 0.78 16 47 H 0.05 2.58 7.71 -2.39 -0.02 2.57 16 Total: -1.00 -83.60 378.22 2.61 -80.98 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.97 Total: 26.01 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 6.82 Total: -7.68 kcal Atomic # 7 Polarization: -135.75 SS G_CDS: -7.21 Total: -142.96 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -83.60 2.61 -80.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649756653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.001 kcal (2) G-P(sol) polarization free energy of solvation -83.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds