Wall clock time and date at job start Tue Mar 31 2020 23:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86807 * 120.00004 * 2 1 4 4 H 1.48498 * 109.47057 * 270.00332 * 3 2 1 5 5 H 1.48497 * 109.46783 * 30.00499 * 3 2 1 6 6 H 1.48496 * 109.46866 * 150.00128 * 3 2 1 7 7 C 1.40023 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99958 * 179.97438 * 7 2 1 9 9 C 1.41312 * 120.00460 * 359.97438 * 7 2 1 10 10 C 1.40589 * 119.78802 * 180.02562 * 9 7 2 11 11 C 1.38344 * 119.14673 * 179.97438 * 10 9 7 12 12 C 1.38636 * 118.68145 * 0.02562 * 11 10 9 13 13 C 1.39753 * 119.49538 * 359.97438 * 12 11 10 14 14 N 1.38826 * 119.58660 * 180.02562 * 13 12 11 15 15 C 1.46840 * 111.00137 * 304.18655 * 14 13 12 16 16 C 1.53034 * 109.52365 * 174.16007 * 15 14 13 17 17 C 1.53118 * 109.27904 * 59.18403 * 16 15 14 18 18 C 1.50699 * 109.52403 * 182.44045 * 17 16 15 19 19 N 1.30506 * 126.36882 * 59.70454 * 18 17 16 20 20 N 1.28574 * 109.66674 * 180.02562 * 19 18 17 21 21 C 1.30680 * 109.63525 * 0.07676 * 20 19 18 22 22 N 1.35178 * 107.32827 * 359.56095 * 21 20 19 23 23 C 1.46802 * 111.14603 * 180.02562 * 22 21 20 24 24 C 1.54421 * 105.62517 * 343.36219 * 23 22 21 25 25 C 1.51331 * 142.72285 * 179.79014 * 21 20 19 26 26 C 1.53118 * 109.15681 * 302.34252 * 17 16 15 27 27 C 1.46845 * 110.99935 * 179.97438 * 14 13 12 28 28 N 1.31985 * 120.83101 * 0.02562 * 13 12 11 29 29 H 0.97007 * 119.99741 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.42315 * 359.97438 * 10 9 7 31 31 H 1.08001 * 120.66066 * 180.02562 * 11 10 9 32 32 H 1.08001 * 120.25101 * 179.97438 * 12 11 10 33 33 H 1.08997 * 109.46365 * 294.17763 * 15 14 13 34 34 H 1.09007 * 109.45869 * 54.14334 * 15 14 13 35 35 H 1.08998 * 109.50634 * 299.23625 * 16 15 14 36 36 H 1.09004 * 109.53596 * 179.14700 * 16 15 14 37 37 H 1.08991 * 109.52407 * 62.24978 * 17 16 15 38 38 H 1.08996 * 110.38822 * 224.21551 * 23 22 21 39 39 H 1.09000 * 110.00563 * 102.30340 * 23 22 21 40 40 H 1.09008 * 110.96072 * 267.25538 * 24 23 22 41 41 H 1.09006 * 110.96287 * 143.51922 * 24 23 22 42 42 H 1.09002 * 110.47304 * 315.17061 * 25 21 20 43 43 H 1.08999 * 110.47648 * 77.64377 * 25 21 20 44 44 H 1.08996 * 109.50708 * 297.71713 * 26 17 16 45 45 H 1.09006 * 109.50420 * 177.59520 * 26 17 16 46 46 H 1.08999 * 109.46394 * 305.85910 * 27 14 13 47 47 H 1.09008 * 109.46203 * 65.82441 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4390 2.6526 0.7001 6 1 3.5390 1.4402 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0010 9 6 1.3011 -2.4365 -0.0005 10 6 2.0086 -3.6514 -0.0005 11 6 1.3035 -4.8417 0.0000 12 6 -0.0820 -4.7944 0.0000 13 6 -0.7282 -3.5552 0.0000 14 7 -2.1155 -3.5055 0.0005 15 6 -2.6694 -4.2568 -1.1331 16 6 -4.1948 -4.3030 -1.0197 17 6 -4.7448 -2.8740 -1.0128 18 6 -6.2415 -2.9112 -0.8410 19 7 -6.8922 -3.4247 0.1670 20 7 -8.1568 -3.2817 -0.0163 21 6 -8.3696 -2.6711 -1.1519 22 7 -7.1624 -2.4115 -1.7019 23 6 -7.3046 -1.7212 -2.9896 24 6 -8.7731 -1.9354 -3.4165 25 6 -9.4697 -2.1560 -2.0544 26 6 -4.1156 -2.0990 0.1482 27 6 -2.5924 -2.1167 0.0010 28 7 -0.0360 -2.4314 -0.0005 29 1 -0.4850 0.8401 0.0004 30 1 3.0886 -3.6553 -0.0010 31 1 1.8222 -5.7890 0.0004 32 1 -0.6577 -5.7082 0.0000 33 1 -2.3893 -3.7664 -2.0654 34 1 -2.2735 -5.2724 -1.1239 35 1 -4.4759 -4.8056 -0.0942 36 1 -4.6072 -4.8476 -1.8691 37 1 -4.4974 -2.3840 -1.9544 38 1 -6.6302 -2.1536 -3.7288 39 1 -7.0990 -0.6577 -2.8674 40 1 -8.8701 -2.8163 -4.0513 41 1 -9.1667 -1.0507 -3.9171 42 1 -10.2642 -2.8965 -2.1480 43 1 -9.8686 -1.2167 -1.6714 44 1 -4.3953 -2.5669 1.0921 45 1 -4.4707 -1.0685 0.1328 46 1 -2.1407 -1.5779 0.8339 47 1 -2.3126 -1.6363 -0.9367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649758263.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:01 Heat of formation + Delta-G solvation = 130.146956 kcal Electronic energy + Delta-G solvation = -29260.618745 eV Core-core repulsion = 25444.787320 eV Total energy + Delta-G solvation = -3815.831425 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.46510 -39.36167 -37.63979 -37.25797 -34.32596 -33.31522 -32.00776 -30.88039 -30.07419 -29.86942 -28.87026 -27.62105 -25.69702 -24.43448 -22.91836 -22.88399 -21.51892 -21.11697 -20.89057 -20.25624 -19.08816 -17.51520 -17.29261 -16.48014 -16.20876 -15.13218 -14.97616 -14.74624 -14.62736 -14.54699 -13.96190 -13.88859 -13.83284 -13.60962 -13.57968 -13.37608 -12.86254 -12.71160 -12.15401 -12.10800 -12.08065 -11.87374 -11.67725 -11.38639 -11.25063 -11.06263 -10.98335 -10.75016 -10.70492 -10.59853 -10.33880 -10.30379 -10.22464 -10.12448 -9.97096 -9.44474 -8.95560 -8.68899 -8.02628 -7.60393 -6.93838 -6.43345 -4.53257 1.72802 2.29584 2.72903 2.83583 3.01157 3.06524 3.09644 3.20481 3.45787 3.92335 3.93051 4.17881 4.22839 4.39693 4.47041 4.72963 4.79846 4.89207 4.91134 5.03559 5.09571 5.20628 5.27059 5.39372 5.45497 5.53453 5.69671 5.77244 5.84718 5.92974 6.01317 6.03467 6.10610 6.14971 6.21302 6.28238 6.42244 6.56621 6.65748 6.70757 6.77077 6.80790 6.92068 7.12998 7.15557 7.48845 7.70156 7.79740 7.84799 8.18434 8.37367 8.69227 8.74671 8.98506 10.07764 10.28716 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.014557 B = 0.002897 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.071600 B = 9661.495170 C =10969.200642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.717 5.717 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.432 4.432 8 H 0.082 0.918 9 C 0.275 3.725 10 C -0.295 4.295 11 C -0.045 4.045 12 C -0.321 4.321 13 C 0.323 3.677 14 N -0.479 5.479 15 C 0.068 3.932 16 C -0.102 4.102 17 C -0.001 4.001 18 C 0.216 3.784 19 N -0.281 5.281 20 N -0.282 5.282 21 C 0.142 3.858 22 N -0.496 5.496 23 C 0.101 3.899 24 C -0.128 4.128 25 C -0.038 4.038 26 C -0.108 4.108 27 C 0.083 3.917 28 N -0.508 5.508 29 H 0.270 0.730 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.035 0.965 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.062 0.938 46 H 0.100 0.900 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.097 0.166 -9.691 18.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.339 5.339 2 C -0.153 4.153 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.463 4.463 8 H 0.101 0.899 9 C 0.149 3.851 10 C -0.318 4.318 11 C -0.070 4.070 12 C -0.346 4.346 13 C 0.085 3.915 14 N -0.198 5.198 15 C -0.059 4.059 16 C -0.140 4.140 17 C -0.022 4.022 18 C -0.050 4.050 19 N -0.120 5.120 20 N -0.123 5.123 21 C -0.126 4.126 22 N -0.188 5.188 23 C -0.022 4.022 24 C -0.167 4.167 25 C -0.077 4.077 26 C -0.147 4.147 27 C -0.044 4.044 28 N -0.226 5.226 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.053 0.947 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.098 0.902 45 H 0.080 0.920 46 H 0.118 0.882 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.021 0.218 -7.948 18.786 hybrid contribution 1.385 0.895 -1.822 2.458 sum -15.636 1.112 -9.770 18.471 Atomic orbital electron populations 1.70119 1.07086 1.27381 1.29269 1.26020 0.94904 1.00874 0.93453 0.86366 0.80572 0.81005 0.79085 1.19575 1.20184 1.18611 1.19571 0.94187 0.89350 1.43236 0.89944 1.18331 0.87425 0.91941 0.87429 1.21637 0.98579 0.93497 1.18118 1.20704 0.93621 0.96569 0.96079 1.20705 0.94270 0.95946 1.23638 1.19790 0.88065 0.90477 0.93183 1.59073 1.05755 1.14846 1.40079 1.22044 0.93260 0.99214 0.91359 1.21613 0.94981 0.94221 1.03221 1.19793 0.82601 0.98956 1.00837 1.24697 0.94665 0.98013 0.87637 1.74445 0.97510 1.20130 1.19881 1.73998 1.08910 1.16531 1.12826 1.25898 0.88719 1.02977 0.94964 1.47267 1.08015 1.44105 1.19395 1.22399 0.99216 0.98132 0.82407 1.22805 0.92271 1.04529 0.97066 1.20606 0.94123 1.02422 0.90596 1.21766 0.96380 0.98916 0.97612 1.21778 0.90778 0.87865 1.03986 1.68654 1.07841 1.24821 1.21290 0.91906 0.88533 0.88624 0.88649 0.94692 0.89901 0.89637 0.91876 0.90210 0.88580 0.88709 0.89251 0.87800 0.88114 0.88250 0.90220 0.91958 0.88169 0.93433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.01 11.46 55.55 0.64 -17.37 16 2 C 0.07 1.78 5.50 -17.34 -0.10 1.69 16 3 Si 0.91 18.22 29.56 -169.99 -5.02 13.19 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.43 -11.34 9.14 -37.74 -0.34 -11.69 16 8 H 0.08 2.05 7.85 -52.48 -0.41 1.63 16 9 C 0.28 7.44 6.55 -85.00 -0.56 6.88 16 10 C -0.30 -7.30 9.83 -38.66 -0.38 -7.68 16 11 C -0.05 -1.03 10.15 -39.40 -0.40 -1.43 16 12 C -0.32 -7.32 9.20 -38.87 -0.36 -7.68 16 13 C 0.32 7.75 6.41 -155.31 -1.00 6.75 16 14 N -0.48 -9.83 4.67 -173.21 -0.81 -10.64 16 15 C 0.07 1.16 5.24 -3.84 -0.02 1.14 16 16 C -0.10 -1.48 5.36 -26.65 -0.14 -1.62 16 17 C 0.00 -0.01 2.73 -91.65 -0.25 -0.26 16 18 C 0.22 3.18 6.82 -154.90 -1.06 2.12 16 19 N -0.28 -4.88 12.21 32.81 0.40 -4.48 16 20 N -0.28 -4.64 12.22 32.93 0.40 -4.24 16 21 C 0.14 1.74 8.69 -154.83 -1.35 0.40 16 22 N -0.50 -5.82 3.62 -109.39 -0.40 -6.22 16 23 C 0.10 0.67 7.77 -3.13 -0.02 0.65 16 24 C -0.13 -0.50 7.17 -25.16 -0.18 -0.68 16 25 C -0.04 -0.24 6.85 -26.74 -0.18 -0.42 16 26 C -0.11 -1.77 5.36 -26.65 -0.14 -1.91 16 27 C 0.08 1.65 4.65 -3.83 -0.02 1.63 16 28 N -0.51 -13.47 6.16 -10.33 -0.06 -13.53 16 29 H 0.27 6.18 8.29 -40.82 -0.34 5.84 16 30 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 31 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 32 H 0.10 1.97 7.13 -52.49 -0.37 1.60 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.37 6.66 -51.92 -0.35 1.02 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.30 8.14 -51.92 -0.42 -0.12 16 41 H 0.10 0.15 8.14 -51.93 -0.42 -0.28 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.10 2.30 7.70 -51.93 -0.40 1.90 16 47 H 0.05 1.01 8.11 -51.92 -0.42 0.59 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -32.47 378.19 -12.65 -45.12 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -7.01 Total: 4.57 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -6.49 Total: -12.10 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.17 Total: -56.48 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.02 Total: 13.19 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.47 -12.65 -45.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649758263.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.271 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds