Wall clock time and date at job start Tue Mar 31 2020 22:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.46980 * 2 1 4 4 C 1.36938 * 119.99757 * 275.30540 * 3 2 1 5 5 H 1.07995 * 119.99990 * 37.57556 * 4 3 2 6 6 C 1.38810 * 119.99971 * 217.57745 * 4 3 2 7 7 N 1.31625 * 119.99974 * 21.43552 * 6 4 3 8 8 Si 1.86798 * 120.00051 * 201.43348 * 6 4 3 9 9 H 1.48495 * 109.47235 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46899 * 120.00333 * 8 6 4 11 11 H 1.48496 * 109.47325 * 240.00080 * 8 6 4 12 12 C 1.46493 * 119.99805 * 95.31014 * 3 2 1 13 13 C 1.52997 * 109.47131 * 269.99353 * 12 3 2 14 14 C 1.53005 * 109.47268 * 180.02562 * 13 12 3 15 15 N 1.46499 * 109.46955 * 180.02562 * 14 13 12 16 16 C 1.34779 * 119.99760 * 180.02562 * 15 14 13 17 17 O 1.21702 * 120.00279 * 0.02562 * 16 15 14 18 18 C 1.46579 * 119.99757 * 180.02562 * 16 15 14 19 19 S 1.75830 * 125.46181 * 0.02562 * 18 16 15 20 20 C 1.70615 * 91.56635 * 179.97438 * 19 18 16 21 21 C 1.33822 * 110.95458 * 0.02562 * 20 19 18 22 22 C 1.36656 * 125.45589 * 179.97438 * 18 16 15 23 23 C 1.50692 * 123.35090 * 0.05469 * 22 18 16 24 24 N 1.46903 * 109.47284 * 79.95399 * 23 22 18 25 25 C 1.46902 * 111.00319 * 66.04206 * 24 23 22 26 26 C 1.46904 * 111.00263 * 189.99776 * 24 23 22 27 27 H 1.09003 * 109.46681 * 60.00168 * 1 2 3 28 28 H 1.08994 * 109.46825 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47163 * 300.00536 * 1 2 3 30 30 H 1.09002 * 109.47306 * 240.00092 * 2 1 3 31 31 H 1.08996 * 109.46839 * 119.99465 * 2 1 3 32 32 H 0.97000 * 120.00030 * 179.97438 * 7 6 4 33 33 H 1.09011 * 109.47261 * 149.99987 * 12 3 2 34 34 H 1.08994 * 109.47894 * 29.99764 * 12 3 2 35 35 H 1.09000 * 109.47077 * 60.00664 * 13 12 3 36 36 H 1.09000 * 109.47558 * 300.00457 * 13 12 3 37 37 H 1.08997 * 109.47095 * 60.00488 * 14 13 12 38 38 H 1.08995 * 109.46826 * 300.00227 * 14 13 12 39 39 H 0.97002 * 120.00099 * 0.02562 * 15 14 13 40 40 H 1.08002 * 124.52679 * 179.97438 * 20 19 18 41 41 H 1.07997 * 122.44807 * 179.97438 * 21 20 19 42 42 H 1.09006 * 109.47281 * 199.94533 * 23 22 18 43 43 H 1.09001 * 109.47621 * 319.95060 * 23 22 18 44 44 H 1.08996 * 109.46562 * 60.00003 * 25 24 23 45 45 H 1.09004 * 109.47136 * 180.02562 * 25 24 23 46 46 H 1.09003 * 109.47257 * 300.00481 * 25 24 23 47 47 H 1.09007 * 109.46789 * 59.99914 * 26 24 23 48 48 H 1.08993 * 109.46877 * 179.97438 * 26 24 23 49 49 H 1.08992 * 109.47212 * 299.99889 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1432 2.0633 -1.1809 5 1 1.4107 1.9277 -1.9628 6 6 3.2112 2.9289 -1.3729 7 7 4.3027 2.7980 -0.6491 8 14 3.0993 4.2795 -2.6584 9 1 1.7772 4.2142 -3.3314 10 1 3.2551 5.6022 -2.0016 11 1 4.1766 4.0964 -3.6639 12 6 2.3732 2.0327 1.2632 13 6 1.1426 2.7383 1.8364 14 6 1.5133 3.4192 3.1555 15 7 0.3348 4.0944 3.7046 16 6 0.4248 4.7661 4.8696 17 8 1.4851 4.8123 5.4652 18 6 -0.7545 5.4411 5.4193 19 16 -2.3510 5.4669 4.6828 20 6 -2.9752 6.4135 5.9577 21 6 -2.0275 6.6801 6.8642 22 6 -0.7896 6.1505 6.5868 23 6 0.4097 6.3351 7.4803 24 7 1.2650 7.3995 6.9383 25 6 0.5849 8.7004 6.9928 26 6 2.5535 7.4491 7.6421 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 5.0492 3.4027 -0.7835 33 1 3.1617 2.7642 1.0860 34 1 2.7254 1.2834 1.9721 35 1 0.3541 2.0069 2.0138 36 1 0.7903 3.4877 1.1276 37 1 2.3016 4.1507 2.9778 38 1 1.8658 2.6701 3.8645 39 1 -0.5103 4.0579 3.2298 40 1 -3.9983 6.7529 6.0239 41 1 -2.2213 7.2677 7.7493 42 1 0.0780 6.6103 8.4815 43 1 0.9744 5.4040 7.5277 44 1 0.3421 8.9403 8.0279 45 1 1.2401 9.4703 6.5850 46 1 -0.3323 8.6559 6.4054 47 1 3.0675 6.4948 7.5266 48 1 3.1671 8.2453 7.2206 49 1 2.3820 7.6438 8.7007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660536574.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:18 Heat of formation + Delta-G solvation = 19.333038 kcal Electronic energy + Delta-G solvation = -27339.858596 eV Core-core repulsion = 23622.373119 eV Total energy + Delta-G solvation = -3717.485477 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.87107 -38.38387 -36.45167 -36.33694 -34.66546 -31.83531 -31.45145 -30.38854 -28.68120 -27.77164 -27.59385 -25.25527 -24.25030 -23.47834 -21.74827 -21.31616 -20.97355 -20.11391 -18.76411 -18.25279 -16.67452 -16.11029 -15.73074 -15.62061 -15.26012 -15.07940 -14.92651 -14.77167 -14.40880 -14.04916 -13.75111 -13.42773 -13.29306 -13.06131 -12.83500 -12.53933 -12.51350 -12.35371 -12.26326 -11.78719 -11.73449 -11.61235 -11.54115 -11.38525 -11.13709 -11.04307 -10.99440 -10.74069 -10.53195 -10.41861 -10.01428 -9.73690 -9.58398 -9.50052 -9.04218 -8.73894 -8.70384 -8.44611 -8.34131 -6.53561 -5.75602 -3.34833 0.38231 1.30818 1.70140 2.18366 3.31025 3.35985 3.39608 3.46323 3.48106 4.03079 4.50137 4.64025 4.79027 4.92243 5.04606 5.12371 5.18424 5.26558 5.29460 5.42738 5.43403 5.48066 5.65360 5.70933 5.72156 5.76066 5.87044 5.91174 6.01868 6.08773 6.12822 6.15248 6.32745 6.38966 6.46863 6.51709 6.61689 6.78644 6.82760 6.93853 6.94590 6.99606 7.12769 7.20791 7.68812 7.71646 7.85627 8.38684 8.55552 9.22842 9.85198 10.44046 11.23756 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.002752 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.689775 B =10173.082840 C =10970.589947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.585 5.585 4 C -0.260 4.260 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.290 1.290 12 C 0.152 3.848 13 C -0.147 4.147 14 C 0.124 3.876 15 N -0.724 5.724 16 C 0.584 3.416 17 O -0.512 6.512 18 C -0.236 4.236 19 S 0.199 5.801 20 C -0.237 4.237 21 C -0.143 4.143 22 C -0.030 4.030 23 C 0.115 3.885 24 N -0.528 5.528 25 C 0.023 3.977 26 C 0.031 3.969 27 H 0.048 0.952 28 H 0.034 0.966 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.033 0.967 32 H 0.254 0.746 33 H 0.095 0.905 34 H 0.025 0.975 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.393 0.607 40 H 0.167 0.833 41 H 0.140 0.860 42 H 0.037 0.963 43 H 0.102 0.898 44 H 0.021 0.979 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.075 0.925 48 H 0.066 0.934 49 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.545 7.983 17.201 23.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.389 4.389 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.528 5.528 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.217 1.217 12 C 0.025 3.975 13 C -0.188 4.188 14 C 0.001 3.999 15 N -0.375 5.375 16 C 0.369 3.631 17 O -0.389 6.389 18 C -0.358 4.358 19 S 0.467 5.533 20 C -0.374 4.374 21 C -0.175 4.175 22 C -0.046 4.046 23 C -0.015 4.015 24 N -0.251 5.251 25 C -0.126 4.126 26 C -0.117 4.117 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.113 0.887 34 H 0.043 0.957 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.227 0.773 40 H 0.185 0.815 41 H 0.158 0.842 42 H 0.055 0.945 43 H 0.120 0.880 44 H 0.039 0.961 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.093 0.907 48 H 0.085 0.915 49 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -13.120 7.342 15.756 21.779 hybrid contribution -0.352 1.750 1.283 2.198 sum -13.472 9.092 17.039 23.548 Atomic orbital electron populations 1.22371 1.00201 0.98860 1.01116 1.20845 0.91656 0.87423 0.98693 1.43753 1.76053 1.08184 1.02517 1.19007 1.04633 1.21165 0.94138 0.92331 1.25183 0.94230 1.01289 0.98038 1.70008 1.03193 1.37234 1.42343 0.86383 0.77640 0.82410 0.81288 1.20115 1.21385 1.21654 1.20784 0.94408 0.96629 0.85721 1.22550 1.02398 0.99883 0.93956 1.21484 0.86789 0.96078 0.95551 1.46075 1.14465 1.53983 1.23001 1.16878 0.86617 0.78515 0.81118 1.90805 1.28158 1.60560 1.59424 1.24627 0.98182 1.10906 1.02043 1.83136 1.00535 1.47259 1.22386 1.25180 1.04732 1.06954 1.00548 1.19875 0.91922 1.03951 1.01703 1.19274 0.95341 0.95563 0.94381 1.20780 0.90925 0.97212 0.92532 1.61805 1.03816 1.03760 1.55745 1.22443 0.99670 0.91150 0.99323 1.22333 0.91004 1.03310 0.95070 0.93277 0.94659 0.93793 0.93914 0.94854 0.93570 0.88713 0.95676 0.93076 0.91716 0.91264 0.91864 0.77307 0.81536 0.84243 0.94502 0.88022 0.96063 0.91555 0.91491 0.90667 0.91492 0.96202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 10.21 37.16 0.38 -2.59 16 2 C 0.14 2.94 6.44 -4.04 -0.03 2.92 16 3 N -0.58 -14.25 2.43 -173.24 -0.42 -14.67 16 4 C -0.26 -6.98 9.45 -15.06 -0.14 -7.12 16 5 H 0.06 1.58 7.92 -52.49 -0.42 1.17 16 6 C 0.01 0.36 4.95 -17.43 -0.09 0.27 16 7 N -0.89 -25.32 11.47 55.49 0.64 -24.68 16 8 Si 0.89 21.43 29.60 -169.99 -5.03 16.40 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 C 0.15 3.44 5.33 -4.05 -0.02 3.42 16 13 C -0.15 -2.76 5.65 -26.73 -0.15 -2.91 16 14 C 0.12 2.13 5.67 -4.04 -0.02 2.11 16 15 N -0.72 -10.91 5.55 -61.65 -0.34 -11.26 16 16 C 0.58 9.18 7.78 -12.90 -0.10 9.08 16 17 O -0.51 -9.38 14.34 5.19 0.07 -9.31 16 18 C -0.24 -3.05 6.45 -36.79 -0.24 -3.29 16 19 S 0.20 1.93 22.16 -107.50 -2.38 -0.45 16 20 C -0.24 -1.98 10.92 29.18 0.32 -1.66 16 21 C -0.14 -1.32 9.17 -41.41 -0.38 -1.70 16 22 C -0.03 -0.36 4.54 -105.48 -0.48 -0.83 16 23 C 0.11 1.36 4.35 -4.98 -0.02 1.33 16 24 N -0.53 -6.53 4.84 -252.72 -1.22 -7.75 16 25 C 0.02 0.23 9.33 60.07 0.56 0.79 16 26 C 0.03 0.34 9.57 60.07 0.57 0.91 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.76 6.64 -51.93 -0.34 0.41 16 30 H 0.04 0.93 8.08 -51.93 -0.42 0.51 16 31 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 32 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.10 2.47 5.52 -51.92 -0.29 2.18 16 34 H 0.02 0.55 7.86 -51.93 -0.41 0.14 16 35 H 0.05 0.90 6.64 -51.93 -0.34 0.55 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.39 5.15 7.59 -40.82 -0.31 4.84 16 40 H 0.17 0.95 8.06 -52.49 -0.42 0.52 16 41 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 43 H 0.10 1.38 6.57 -51.93 -0.34 1.04 16 44 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 46 H 0.07 0.69 6.71 -51.93 -0.35 0.34 16 47 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 48 H 0.07 0.68 8.12 -51.93 -0.42 0.25 16 49 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 406.76 15.07 6.13 6.13 Total: -1.00 -30.79 406.76 -10.65 -41.44 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -8.25 Total: 3.43 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 0.17 Total: 0.74 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -1.35 Total: -58.37 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.07 Total: -9.31 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.38 Total: -0.45 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.79 -10.65 -41.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660536574.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.769 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds