Wall clock time and date at job start Tue Mar 31 2020 22:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.46980 * 2 1 4 4 C 1.36938 * 119.99757 * 275.30540 * 3 2 1 5 5 H 1.07995 * 119.99990 * 37.57556 * 4 3 2 6 6 C 1.38810 * 119.99971 * 217.57745 * 4 3 2 7 7 N 1.31625 * 119.99974 * 21.43552 * 6 4 3 8 8 Si 1.86798 * 120.00051 * 201.43348 * 6 4 3 9 9 H 1.48495 * 109.47235 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46899 * 120.00333 * 8 6 4 11 11 H 1.48496 * 109.47325 * 240.00080 * 8 6 4 12 12 C 1.46493 * 119.99805 * 95.31014 * 3 2 1 13 13 C 1.52997 * 109.47131 * 269.99353 * 12 3 2 14 14 C 1.53005 * 109.47268 * 180.02562 * 13 12 3 15 15 N 1.46499 * 109.46955 * 180.02562 * 14 13 12 16 16 C 1.34779 * 119.99760 * 180.02562 * 15 14 13 17 17 O 1.21702 * 120.00279 * 0.02562 * 16 15 14 18 18 C 1.46579 * 119.99757 * 180.02562 * 16 15 14 19 19 S 1.75830 * 125.46181 * 0.02562 * 18 16 15 20 20 C 1.70615 * 91.56635 * 179.97438 * 19 18 16 21 21 C 1.33822 * 110.95458 * 0.02562 * 20 19 18 22 22 C 1.36656 * 125.45589 * 179.97438 * 18 16 15 23 23 C 1.50692 * 123.35090 * 0.05469 * 22 18 16 24 24 N 1.46903 * 109.47284 * 79.95399 * 23 22 18 25 25 C 1.46902 * 111.00319 * 66.04206 * 24 23 22 26 26 C 1.46904 * 111.00263 * 189.99776 * 24 23 22 27 27 H 1.09003 * 109.46681 * 60.00168 * 1 2 3 28 28 H 1.08994 * 109.46825 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47163 * 300.00536 * 1 2 3 30 30 H 1.09002 * 109.47306 * 240.00092 * 2 1 3 31 31 H 1.08996 * 109.46839 * 119.99465 * 2 1 3 32 32 H 0.97000 * 120.00030 * 179.97438 * 7 6 4 33 33 H 1.09011 * 109.47261 * 149.99987 * 12 3 2 34 34 H 1.08994 * 109.47894 * 29.99764 * 12 3 2 35 35 H 1.09000 * 109.47077 * 60.00664 * 13 12 3 36 36 H 1.09000 * 109.47558 * 300.00457 * 13 12 3 37 37 H 1.08997 * 109.47095 * 60.00488 * 14 13 12 38 38 H 1.08995 * 109.46826 * 300.00227 * 14 13 12 39 39 H 0.97002 * 120.00099 * 0.02562 * 15 14 13 40 40 H 1.08002 * 124.52679 * 179.97438 * 20 19 18 41 41 H 1.07997 * 122.44807 * 179.97438 * 21 20 19 42 42 H 1.09006 * 109.47281 * 199.94533 * 23 22 18 43 43 H 1.09001 * 109.47621 * 319.95060 * 23 22 18 44 44 H 1.08996 * 109.46562 * 60.00003 * 25 24 23 45 45 H 1.09004 * 109.47136 * 180.02562 * 25 24 23 46 46 H 1.09003 * 109.47257 * 300.00481 * 25 24 23 47 47 H 1.09007 * 109.46789 * 59.99914 * 26 24 23 48 48 H 1.08993 * 109.46877 * 179.97438 * 26 24 23 49 49 H 1.08992 * 109.47212 * 299.99889 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1432 2.0633 -1.1809 5 1 1.4107 1.9277 -1.9628 6 6 3.2112 2.9289 -1.3729 7 7 4.3027 2.7980 -0.6491 8 14 3.0993 4.2795 -2.6584 9 1 1.7772 4.2142 -3.3314 10 1 3.2551 5.6022 -2.0016 11 1 4.1766 4.0964 -3.6639 12 6 2.3732 2.0327 1.2632 13 6 1.1426 2.7383 1.8364 14 6 1.5133 3.4192 3.1555 15 7 0.3348 4.0944 3.7046 16 6 0.4248 4.7661 4.8696 17 8 1.4851 4.8123 5.4652 18 6 -0.7545 5.4411 5.4193 19 16 -2.3510 5.4669 4.6828 20 6 -2.9752 6.4135 5.9577 21 6 -2.0275 6.6801 6.8642 22 6 -0.7896 6.1505 6.5868 23 6 0.4097 6.3351 7.4803 24 7 1.2650 7.3995 6.9383 25 6 0.5849 8.7004 6.9928 26 6 2.5535 7.4491 7.6421 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 5.0492 3.4027 -0.7835 33 1 3.1617 2.7642 1.0860 34 1 2.7254 1.2834 1.9721 35 1 0.3541 2.0069 2.0138 36 1 0.7903 3.4877 1.1276 37 1 2.3016 4.1507 2.9778 38 1 1.8658 2.6701 3.8645 39 1 -0.5103 4.0579 3.2298 40 1 -3.9983 6.7529 6.0239 41 1 -2.2213 7.2677 7.7493 42 1 0.0780 6.6103 8.4815 43 1 0.9744 5.4040 7.5277 44 1 0.3421 8.9403 8.0279 45 1 1.2401 9.4703 6.5850 46 1 -0.3323 8.6559 6.4054 47 1 3.0675 6.4948 7.5266 48 1 3.1671 8.2453 7.2206 49 1 2.3820 7.6438 8.7007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660536574.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:18 Heat of formation + Delta-G solvation = 0.047266 kcal Electronic energy + Delta-G solvation = -27340.694890 eV Core-core repulsion = 23622.373119 eV Total energy + Delta-G solvation = -3718.321770 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.94712 -39.38992 -38.12756 -37.23990 -36.10527 -33.80198 -32.89734 -31.31104 -30.27304 -28.86783 -28.43163 -26.92439 -25.46847 -24.79071 -22.71722 -22.56833 -22.29841 -21.88604 -19.81510 -19.15599 -18.58135 -17.06975 -17.04374 -16.77554 -16.66168 -16.32441 -16.04508 -15.89432 -15.69635 -15.34537 -15.14977 -14.93454 -14.49126 -14.25816 -14.06150 -13.84293 -13.70420 -13.30804 -13.22247 -13.16300 -13.04478 -12.75597 -12.70841 -12.62705 -12.57380 -12.53899 -12.46360 -12.27685 -12.12045 -11.91690 -11.83703 -11.44692 -11.23507 -10.91498 -10.48804 -10.17571 -9.72952 -9.49003 -9.17125 -8.53409 -7.79420 -5.43546 -0.46027 0.51242 0.95624 1.39598 1.44737 1.48843 1.57992 2.14203 2.21900 2.52304 3.20490 3.26011 3.67719 3.81053 3.92121 4.06937 4.16775 4.25574 4.33265 4.35952 4.45931 4.46744 4.51683 4.55710 4.60580 4.71228 4.74884 4.78334 4.79630 4.90343 4.97767 4.99956 5.01519 5.03090 5.05234 5.17314 5.32244 5.34447 5.35367 5.42300 5.47037 5.62177 5.71446 5.85641 6.09485 6.18572 6.49865 6.51036 7.19613 7.21222 7.90376 8.42871 9.15307 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.002752 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.689775 B =10173.082840 C =10970.589947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 N -0.602 5.602 4 C -0.262 4.262 5 H 0.055 0.945 6 C -0.036 4.036 7 N -0.917 5.917 8 Si 0.952 3.048 9 H -0.265 1.265 10 H -0.292 1.292 11 H -0.291 1.291 12 C 0.153 3.847 13 C -0.124 4.124 14 C 0.139 3.861 15 N -0.719 5.719 16 C 0.580 3.420 17 O -0.549 6.549 18 C -0.281 4.281 19 S 0.223 5.777 20 C -0.215 4.215 21 C -0.152 4.152 22 C -0.026 4.026 23 C 0.116 3.884 24 N -0.556 5.556 25 C 0.026 3.974 26 C 0.034 3.966 27 H 0.036 0.964 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.029 0.971 31 H 0.044 0.956 32 H 0.250 0.750 33 H 0.059 0.941 34 H 0.028 0.972 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.044 0.956 38 H 0.063 0.937 39 H 0.404 0.596 40 H 0.202 0.798 41 H 0.165 0.835 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.039 0.961 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.054 0.946 48 H 0.070 0.930 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.871 8.878 18.098 26.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.009 3.991 3 N -0.323 5.323 4 C -0.393 4.393 5 H 0.073 0.927 6 C -0.233 4.233 7 N -0.562 5.562 8 Si 0.780 3.220 9 H -0.190 1.190 10 H -0.218 1.218 11 H -0.218 1.218 12 C 0.026 3.974 13 C -0.164 4.164 14 C 0.014 3.986 15 N -0.371 5.371 16 C 0.368 3.632 17 O -0.429 6.429 18 C -0.402 4.402 19 S 0.492 5.508 20 C -0.352 4.352 21 C -0.183 4.183 22 C -0.042 4.042 23 C -0.013 4.013 24 N -0.280 5.280 25 C -0.122 4.122 26 C -0.114 4.114 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.240 0.760 40 H 0.219 0.781 41 H 0.182 0.818 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.057 0.943 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.089 0.911 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -16.498 8.221 16.644 24.835 hybrid contribution 0.629 1.427 1.051 1.880 sum -15.869 9.648 17.695 25.652 Atomic orbital electron populations 1.22171 0.97259 1.00790 1.00831 1.21001 0.93852 0.85666 0.98627 1.43998 1.76454 1.09596 1.02265 1.19204 1.04060 1.21201 0.94812 0.92695 1.25841 0.94043 1.03310 1.00120 1.70137 1.03803 1.38050 1.44162 0.85455 0.77810 0.79596 0.79090 1.18957 1.21836 1.21848 1.20669 0.95139 0.96077 0.85551 1.22186 1.00813 0.99504 0.93874 1.21121 0.87090 0.95423 0.94935 1.45898 1.14138 1.53921 1.23171 1.17313 0.87273 0.78002 0.80632 1.90783 1.29910 1.61861 1.60329 1.24407 0.98979 1.13136 1.03673 1.83025 0.98132 1.47235 1.22436 1.25644 1.05988 1.04683 0.98914 1.20029 0.90806 1.04459 1.02993 1.19513 0.96250 0.94798 0.93673 1.20707 0.90813 0.96066 0.93730 1.61763 1.04525 1.04930 1.56753 1.22422 0.99335 0.90002 1.00396 1.22271 0.90621 1.02305 0.96160 0.94487 0.91610 0.93059 0.95232 0.93716 0.94058 0.92255 0.95333 0.91153 0.93074 0.93753 0.91873 0.76020 0.78100 0.81766 0.92442 0.90740 0.94267 0.91434 0.91703 0.92751 0.91091 0.94361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.07 10.21 71.98 0.73 -4.33 16 2 C 0.13 5.52 6.44 86.38 0.56 6.07 16 3 N -0.60 -29.49 2.43 -702.01 -1.71 -31.20 16 4 C -0.26 -14.22 9.45 84.03 0.79 -13.42 16 5 H 0.06 2.98 7.92 -2.91 -0.02 2.95 16 6 C -0.04 -1.99 4.95 84.86 0.42 -1.56 16 7 N -0.92 -54.06 11.47 21.65 0.25 -53.82 16 8 Si 0.95 44.75 29.60 68.60 2.03 46.78 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 12 C 0.15 7.06 5.33 86.38 0.46 7.52 16 13 C -0.12 -4.63 5.65 30.59 0.17 -4.46 16 14 C 0.14 4.89 5.67 86.38 0.49 5.38 16 15 N -0.72 -21.85 5.55 -467.17 -2.59 -24.45 16 16 C 0.58 18.65 7.78 86.42 0.67 19.33 16 17 O -0.55 -21.13 14.34 -4.36 -0.06 -21.20 16 18 C -0.28 -7.07 6.45 24.08 0.16 -6.92 16 19 S 0.22 3.80 22.16 -56.49 -1.25 2.55 16 20 C -0.21 -2.74 10.92 66.82 0.73 -2.01 16 21 C -0.15 -2.32 9.17 21.08 0.19 -2.12 16 22 C -0.03 -0.57 4.54 -20.42 -0.09 -0.66 16 23 C 0.12 2.70 4.35 85.55 0.37 3.07 16 24 N -0.56 -13.61 4.84 -953.46 -4.62 -18.23 16 25 C 0.03 0.49 9.33 127.69 1.19 1.68 16 26 C 0.03 0.75 9.57 127.69 1.22 1.98 16 27 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.05 1.63 6.64 -2.39 -0.02 1.62 16 30 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16 31 H 0.04 1.72 7.83 -2.39 -0.02 1.70 16 32 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 33 H 0.06 3.22 5.52 -2.38 -0.01 3.21 16 34 H 0.03 1.26 7.86 -2.39 -0.02 1.24 16 35 H 0.07 2.37 6.64 -2.39 -0.02 2.35 16 36 H 0.05 2.05 8.14 -2.39 -0.02 2.04 16 37 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.06 2.22 8.14 -2.39 -0.02 2.21 16 39 H 0.40 10.32 7.59 -92.71 -0.70 9.62 16 40 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 42 H 0.06 1.05 8.08 -2.38 -0.02 1.03 16 43 H 0.07 2.13 6.57 -2.39 -0.02 2.11 16 44 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.07 1.21 8.12 -2.39 -0.02 1.19 16 46 H 0.06 1.22 6.71 -2.39 -0.02 1.20 16 47 H 0.05 1.39 8.12 -2.38 -0.02 1.37 16 48 H 0.07 1.45 8.12 -2.39 -0.02 1.43 16 49 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -68.70 406.76 0.35 -68.35 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.23 Total: 21.69 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 8.07 Total: 9.52 kcal Atomic # 7 Polarization: -119.03 SS G_CDS: -8.67 Total: -127.70 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.06 Total: -21.20 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -1.25 Total: 2.55 kcal Total: -68.70 0.35 -68.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660536574.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.402 kcal (2) G-P(sol) polarization free energy of solvation -68.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds