Wall clock time and date at job start Tue Mar 31 2020 22:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 N 1.46497 * 109.47006 * 180.02562 * 5 4 2 7 7 C 1.36937 * 119.99347 * 179.97438 * 6 5 4 8 8 H 1.07994 * 120.00664 * 0.02562 * 7 6 5 9 9 C 1.38815 * 119.99702 * 179.97438 * 7 6 5 10 10 N 1.31618 * 119.99840 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00151 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47140 * 90.00122 * 11 9 7 13 13 H 1.48496 * 109.46950 * 210.00487 * 11 9 7 14 14 H 1.48501 * 109.47058 * 330.00318 * 11 9 7 15 15 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 16 16 C 1.34781 * 119.99732 * 274.99921 * 15 2 1 17 17 O 1.21283 * 119.99585 * 359.97438 * 16 15 2 18 18 C 1.50697 * 119.99747 * 179.97438 * 16 15 2 19 19 H 1.08998 * 109.47252 * 299.99651 * 18 16 15 20 20 C 1.53003 * 109.47381 * 60.00110 * 18 16 15 21 21 N 1.46509 * 109.46681 * 179.97438 * 18 16 15 22 22 C 1.34779 * 119.99359 * 155.00149 * 21 18 16 23 23 O 1.21276 * 120.00546 * 359.97438 * 22 21 18 24 24 C 1.50701 * 119.99295 * 180.02562 * 22 21 18 25 25 N 1.46501 * 109.46780 * 179.97438 * 24 22 21 26 26 C 1.34598 * 126.43660 * 124.99837 * 25 24 22 27 27 N 1.31071 * 106.67930 * 180.02562 * 26 25 24 28 28 N 1.28835 * 107.99247 * 0.02562 * 27 26 25 29 29 N 1.28735 * 109.39463 * 359.73269 * 28 27 26 30 30 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 34 34 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 35 35 H 1.08999 * 109.47112 * 300.00392 * 5 4 2 36 36 H 1.09001 * 109.46642 * 60.00139 * 5 4 2 37 37 H 0.96996 * 120.00415 * 0.02562 * 6 5 4 38 38 H 0.97010 * 119.99790 * 179.97438 * 10 9 7 39 39 H 0.96998 * 120.00364 * 94.99433 * 15 2 1 40 40 H 1.08996 * 109.47375 * 179.97438 * 20 18 16 41 41 H 1.09006 * 109.46570 * 299.99804 * 20 18 16 42 42 H 1.09006 * 109.47034 * 59.99357 * 20 18 16 43 43 H 0.96991 * 120.00088 * 334.99848 * 21 18 16 44 44 H 1.08996 * 109.47294 * 299.99658 * 24 22 21 45 45 H 1.09000 * 109.47088 * 60.00328 * 24 22 21 46 46 H 1.08001 * 126.66186 * 0.04409 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 7 4.0530 -1.3035 -2.5103 7 6 5.3950 -1.3392 -2.7803 8 1 6.0935 -0.8591 -2.1111 9 6 5.8577 -1.9936 -3.9137 10 7 5.0065 -2.5792 -4.7291 11 14 7.6885 -2.0431 -4.2818 12 1 8.2888 -3.2437 -3.6467 13 1 7.8965 -2.1037 -5.7509 14 1 8.3354 -0.8210 -3.7403 15 7 2.0184 -0.6907 1.1961 16 6 2.1472 -0.0183 2.3571 17 8 1.8591 1.1586 2.4114 18 6 2.6490 -0.7289 3.5877 19 1 1.9760 -1.5507 3.8325 20 6 4.0514 -1.2799 3.3222 21 7 2.6989 0.2127 4.7090 22 6 2.6194 -0.2425 5.9751 23 8 2.5060 -1.4313 6.1862 24 6 2.6702 0.7261 7.1285 25 7 2.5651 -0.0110 8.3901 26 6 3.4288 0.0416 9.4211 27 7 2.9637 -0.7657 10.3431 28 7 1.8716 -1.2873 9.9012 29 7 1.6251 -0.8295 8.7236 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7517 -1.7715 -1.2056 34 1 1.6053 -0.2617 -2.1370 35 1 3.8532 0.4369 -1.3574 36 1 3.9994 -1.0729 -0.4261 37 1 3.4256 -1.7344 -3.1116 38 1 5.3298 -3.0361 -5.5214 39 1 2.2491 -1.6318 1.1526 40 1 4.4146 -1.7935 4.2124 41 1 4.0146 -1.9804 2.4878 42 1 4.7244 -0.4581 3.0773 43 1 2.7893 1.1635 4.5402 44 1 3.6135 1.2716 7.1035 45 1 1.8414 1.4296 7.0490 46 1 4.3299 0.6341 9.4778 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668273774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:50 Heat of formation + Delta-G solvation = 60.523232 kcal Electronic energy + Delta-G solvation = -28744.878346 eV Core-core repulsion = 24515.178547 eV Total energy + Delta-G solvation = -4229.699799 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.55200 -40.90698 -39.74511 -36.91065 -36.00929 -35.35614 -34.49758 -32.88296 -32.55324 -31.46667 -30.46781 -29.13266 -27.97489 -25.25364 -24.24717 -24.14848 -23.68502 -21.95857 -21.31302 -20.84900 -20.58305 -18.90307 -18.33136 -17.45514 -17.12330 -16.87865 -16.50559 -16.32417 -16.13777 -15.71735 -15.13556 -14.78018 -14.54799 -14.12715 -13.96819 -13.88273 -13.63910 -13.42118 -13.26455 -12.93386 -12.88770 -12.70728 -12.51145 -12.50064 -12.02495 -11.96936 -11.62306 -11.51332 -11.31811 -11.11646 -10.89234 -10.84073 -10.75452 -10.66118 -10.49111 -10.16110 -10.11744 -9.78207 -9.72644 -9.23132 -8.94279 -7.00663 -5.83959 -3.13222 0.81069 1.31893 1.80316 1.91906 2.26814 2.33656 3.01589 3.37956 3.43201 3.45012 3.58456 3.77022 3.85822 4.11116 4.29236 4.35263 4.50378 4.62914 4.72247 4.83293 4.99266 5.09363 5.20824 5.22423 5.26100 5.37983 5.47017 5.58765 5.60466 5.63184 5.72370 5.78799 5.82463 5.89407 6.11937 6.15785 6.22660 6.32910 6.69186 6.73918 6.76623 7.24766 7.46456 7.62276 7.91185 8.23985 8.34767 9.46000 10.03103 10.37355 11.38722 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.016217 B = 0.001922 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.140652 B =14563.978713 C =15773.426556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.090 0.910 4 C -0.136 4.136 5 C 0.155 3.845 6 N -0.734 5.734 7 C -0.242 4.242 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.932 5.932 11 Si 0.907 3.093 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.282 1.282 15 N -0.709 5.709 16 C 0.514 3.486 17 O -0.542 6.542 18 C 0.126 3.874 19 H 0.117 0.883 20 C -0.162 4.162 21 N -0.703 5.703 22 C 0.505 3.495 23 O -0.508 6.508 24 C 0.098 3.902 25 N -0.302 5.302 26 C 0.161 3.839 27 N -0.306 5.306 28 N -0.077 5.077 29 N -0.063 5.063 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.017 0.983 36 H 0.018 0.982 37 H 0.384 0.616 38 H 0.256 0.744 39 H 0.405 0.595 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.414 0.586 44 H 0.147 0.853 45 H 0.139 0.861 46 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.084 10.001 22.434 25.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.108 0.892 4 C -0.175 4.175 5 C 0.027 3.973 6 N -0.378 5.378 7 C -0.373 4.373 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.581 5.581 11 Si 0.738 3.262 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 N -0.360 5.360 16 C 0.299 3.701 17 O -0.420 6.420 18 C 0.018 3.982 19 H 0.135 0.865 20 C -0.220 4.220 21 N -0.358 5.358 22 C 0.288 3.712 23 O -0.382 6.382 24 C -0.028 4.028 25 N -0.104 5.104 26 C -0.138 4.138 27 N -0.153 5.153 28 N -0.071 5.071 29 N -0.049 5.049 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.240 0.760 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.251 0.749 44 H 0.164 0.836 45 H 0.157 0.843 46 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -7.127 9.076 23.152 25.869 hybrid contribution 1.691 0.530 -1.251 2.169 sum -5.436 9.607 21.901 24.526 Atomic orbital electron populations 1.22168 0.95224 1.02207 1.02408 1.21045 0.93688 0.97686 0.83468 0.89162 1.22087 0.98149 1.00912 0.96309 1.20625 0.90258 0.95604 0.90805 1.42359 1.05407 1.65010 1.25028 1.19201 0.83787 1.28714 1.05570 0.91267 1.24757 0.97753 1.00812 0.97646 1.69657 1.32814 1.40538 1.15080 0.86189 0.85032 0.77676 0.77279 1.21673 1.21703 1.20773 1.46069 1.66114 1.14468 1.09379 1.20380 0.77702 0.87355 0.84700 1.90688 1.50718 1.15720 1.84872 1.20849 0.99985 0.92572 0.84782 0.86515 1.22160 0.94205 1.02110 1.03569 1.45543 1.74322 1.11850 1.04082 1.20100 0.77773 0.89493 0.83871 1.90876 1.47181 1.15896 1.84254 1.21960 1.08615 0.93575 0.78686 1.48153 1.16709 1.30601 1.14943 1.27774 0.99645 1.01888 0.84457 1.75009 1.06158 1.09311 1.24855 1.78700 1.08863 1.18050 1.01523 1.79035 1.11943 1.03508 1.10449 0.92435 0.91336 0.92375 0.91221 0.90059 0.96493 0.96462 0.78286 0.93457 0.75985 0.90873 0.90098 0.91279 0.74903 0.83563 0.84318 0.74768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.48 37.16 0.35 -1.28 16 2 C 0.15 1.67 2.57 -67.93 -0.17 1.49 16 3 H 0.09 1.17 7.58 -51.93 -0.39 0.77 16 4 C -0.14 -1.87 4.87 -26.73 -0.13 -2.00 16 5 C 0.15 2.82 6.15 -4.04 -0.02 2.80 16 6 N -0.73 -17.69 5.60 -59.91 -0.34 -18.03 16 7 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 10 N -0.93 -27.53 13.06 55.49 0.72 -26.80 16 11 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 N -0.71 -7.13 4.42 -53.80 -0.24 -7.37 16 16 C 0.51 5.22 7.19 -10.98 -0.08 5.14 16 17 O -0.54 -6.81 15.50 5.56 0.09 -6.73 16 18 C 0.13 1.03 2.99 -69.08 -0.21 0.82 16 19 H 0.12 1.01 7.58 -51.93 -0.39 0.62 16 20 C -0.16 -1.28 9.38 37.16 0.35 -0.93 16 21 N -0.70 -4.51 4.95 -54.93 -0.27 -4.78 16 22 C 0.51 3.58 7.81 -10.98 -0.09 3.49 16 23 O -0.51 -6.08 15.37 5.56 0.09 -6.00 16 24 C 0.10 0.28 6.96 -5.19 -0.04 0.24 16 25 N -0.30 -2.15 3.19 -63.74 -0.20 -2.35 16 26 C 0.16 0.96 12.79 -90.39 -1.16 -0.19 16 27 N -0.31 -3.29 12.36 29.59 0.37 -2.92 16 28 N -0.08 -1.01 13.43 60.35 0.81 -0.20 16 29 N -0.06 -0.74 12.30 60.35 0.74 0.00 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.02 0.31 7.75 -51.93 -0.40 -0.09 16 37 H 0.38 9.73 7.67 -40.82 -0.31 9.41 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.40 3.56 8.02 -40.82 -0.33 3.23 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.63 7.56 -51.93 -0.39 0.24 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.41 2.00 7.79 -40.82 -0.32 1.68 16 44 H 0.15 -0.29 8.08 -51.93 -0.42 -0.71 16 45 H 0.14 0.08 8.14 -51.93 -0.42 -0.34 16 46 H 0.24 -0.01 8.06 -52.49 -0.42 -0.43 16 LS Contribution 396.24 15.07 5.97 5.97 Total: -1.00 -39.17 396.24 -5.46 -44.63 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.73 Total: 5.32 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -1.44 Total: 2.40 kcal Atomic # 7 Polarization: -64.05 SS G_CDS: 1.59 Total: -62.45 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.17 Total: -12.72 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.17 -5.46 -44.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668273774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.151 kcal (2) G-P(sol) polarization free energy of solvation -39.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds