Wall clock time and date at job start Tue Mar 31 2020 22:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 N 1.46497 * 109.47006 * 180.02562 * 5 4 2 7 7 C 1.36937 * 119.99347 * 179.97438 * 6 5 4 8 8 H 1.07994 * 120.00664 * 0.02562 * 7 6 5 9 9 C 1.38815 * 119.99702 * 179.97438 * 7 6 5 10 10 N 1.31618 * 119.99840 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00151 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47140 * 90.00122 * 11 9 7 13 13 H 1.48496 * 109.46950 * 210.00487 * 11 9 7 14 14 H 1.48501 * 109.47058 * 330.00318 * 11 9 7 15 15 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 16 16 C 1.34781 * 119.99732 * 274.99921 * 15 2 1 17 17 O 1.21283 * 119.99585 * 359.97438 * 16 15 2 18 18 C 1.50697 * 119.99747 * 179.97438 * 16 15 2 19 19 H 1.08998 * 109.47252 * 299.99651 * 18 16 15 20 20 C 1.53003 * 109.47381 * 60.00110 * 18 16 15 21 21 N 1.46509 * 109.46681 * 179.97438 * 18 16 15 22 22 C 1.34779 * 119.99359 * 155.00149 * 21 18 16 23 23 O 1.21276 * 120.00546 * 359.97438 * 22 21 18 24 24 C 1.50701 * 119.99295 * 180.02562 * 22 21 18 25 25 N 1.46501 * 109.46780 * 179.97438 * 24 22 21 26 26 C 1.34598 * 126.43660 * 124.99837 * 25 24 22 27 27 N 1.31071 * 106.67930 * 180.02562 * 26 25 24 28 28 N 1.28835 * 107.99247 * 0.02562 * 27 26 25 29 29 N 1.28735 * 109.39463 * 359.73269 * 28 27 26 30 30 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 34 34 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 35 35 H 1.08999 * 109.47112 * 300.00392 * 5 4 2 36 36 H 1.09001 * 109.46642 * 60.00139 * 5 4 2 37 37 H 0.96996 * 120.00415 * 0.02562 * 6 5 4 38 38 H 0.97010 * 119.99790 * 179.97438 * 10 9 7 39 39 H 0.96998 * 120.00364 * 94.99433 * 15 2 1 40 40 H 1.08996 * 109.47375 * 179.97438 * 20 18 16 41 41 H 1.09006 * 109.46570 * 299.99804 * 20 18 16 42 42 H 1.09006 * 109.47034 * 59.99357 * 20 18 16 43 43 H 0.96991 * 120.00088 * 334.99848 * 21 18 16 44 44 H 1.08996 * 109.47294 * 299.99658 * 24 22 21 45 45 H 1.09000 * 109.47088 * 60.00328 * 24 22 21 46 46 H 1.08001 * 126.66186 * 0.04409 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 7 4.0530 -1.3035 -2.5103 7 6 5.3950 -1.3392 -2.7803 8 1 6.0935 -0.8591 -2.1111 9 6 5.8577 -1.9936 -3.9137 10 7 5.0065 -2.5792 -4.7291 11 14 7.6885 -2.0431 -4.2818 12 1 8.2888 -3.2437 -3.6467 13 1 7.8965 -2.1037 -5.7509 14 1 8.3354 -0.8210 -3.7403 15 7 2.0184 -0.6907 1.1961 16 6 2.1472 -0.0183 2.3571 17 8 1.8591 1.1586 2.4114 18 6 2.6490 -0.7289 3.5877 19 1 1.9760 -1.5507 3.8325 20 6 4.0514 -1.2799 3.3222 21 7 2.6989 0.2127 4.7090 22 6 2.6194 -0.2425 5.9751 23 8 2.5060 -1.4313 6.1862 24 6 2.6702 0.7261 7.1285 25 7 2.5651 -0.0110 8.3901 26 6 3.4288 0.0416 9.4211 27 7 2.9637 -0.7657 10.3431 28 7 1.8716 -1.2873 9.9012 29 7 1.6251 -0.8295 8.7236 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7517 -1.7715 -1.2056 34 1 1.6053 -0.2617 -2.1370 35 1 3.8532 0.4369 -1.3574 36 1 3.9994 -1.0729 -0.4261 37 1 3.4256 -1.7344 -3.1116 38 1 5.3298 -3.0361 -5.5214 39 1 2.2491 -1.6318 1.1526 40 1 4.4146 -1.7935 4.2124 41 1 4.0146 -1.9804 2.4878 42 1 4.7244 -0.4581 3.0773 43 1 2.7893 1.1635 4.5402 44 1 3.6135 1.2716 7.1035 45 1 1.8414 1.4296 7.0490 46 1 4.3299 0.6341 9.4778 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668273774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:49 Heat of formation + Delta-G solvation = 28.823521 kcal Electronic energy + Delta-G solvation = -28746.252949 eV Core-core repulsion = 24515.178547 eV Total energy + Delta-G solvation = -4231.074402 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.16362 -41.61870 -40.49533 -37.99486 -36.63932 -36.18374 -35.97176 -33.78454 -33.46600 -32.79346 -31.43284 -29.66348 -29.37132 -26.09929 -25.69138 -24.85665 -24.41801 -23.27371 -22.27462 -21.67122 -21.38695 -19.60123 -19.11377 -18.78440 -17.96546 -17.67839 -17.24247 -16.96391 -16.75881 -16.62392 -16.32979 -15.95100 -15.47869 -15.30525 -15.19441 -14.86718 -14.71515 -14.49065 -14.26181 -13.94496 -13.63019 -13.43094 -13.35545 -13.14627 -13.09300 -12.89554 -12.87721 -12.70234 -12.38159 -12.25951 -12.21796 -12.13587 -11.98180 -11.92042 -11.64081 -11.50261 -11.10820 -10.98797 -10.92155 -10.38602 -10.12214 -8.99767 -7.95797 -5.24328 0.26622 0.93741 1.26439 1.29880 1.47801 1.48110 1.48788 1.57175 1.74110 2.29277 2.55448 3.22026 3.38329 3.45789 3.49995 3.57472 3.69250 3.94506 4.00811 4.02976 4.04123 4.09720 4.17326 4.39503 4.39919 4.56958 4.57672 4.66642 4.71485 4.73122 4.78926 4.85304 4.98975 5.13232 5.14685 5.20944 5.22416 5.28208 5.34849 5.49340 5.52361 6.26738 6.27492 6.43439 6.96424 7.08922 7.33473 7.58551 8.09979 8.32154 9.27413 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.016217 B = 0.001922 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.140652 B =14563.978713 C =15773.426556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.078 0.922 4 C -0.121 4.121 5 C 0.154 3.846 6 N -0.747 5.747 7 C -0.244 4.244 8 H 0.074 0.926 9 C -0.076 4.076 10 N -0.968 5.968 11 Si 0.971 3.029 12 H -0.286 1.286 13 H -0.296 1.296 14 H -0.270 1.270 15 N -0.708 5.708 16 C 0.517 3.483 17 O -0.565 6.565 18 C 0.133 3.867 19 H 0.111 0.889 20 C -0.155 4.155 21 N -0.694 5.694 22 C 0.504 3.496 23 O -0.563 6.563 24 C 0.096 3.904 25 N -0.299 5.299 26 C 0.186 3.814 27 N -0.348 5.348 28 N -0.120 5.120 29 N -0.097 5.097 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.010 0.990 36 H 0.027 0.973 37 H 0.375 0.625 38 H 0.251 0.749 39 H 0.412 0.588 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.424 0.576 44 H 0.207 0.793 45 H 0.168 0.832 46 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.924 11.904 23.256 26.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.050 3.950 3 H 0.096 0.904 4 C -0.160 4.160 5 C 0.028 3.972 6 N -0.390 5.390 7 C -0.376 4.376 8 H 0.092 0.908 9 C -0.268 4.268 10 N -0.618 5.618 11 Si 0.800 3.200 12 H -0.213 1.213 13 H -0.223 1.223 14 H -0.195 1.195 15 N -0.359 5.359 16 C 0.303 3.697 17 O -0.444 6.444 18 C 0.024 3.976 19 H 0.129 0.871 20 C -0.214 4.214 21 N -0.349 5.349 22 C 0.289 3.711 23 O -0.441 6.441 24 C -0.027 4.027 25 N -0.102 5.102 26 C -0.112 4.112 27 N -0.196 5.196 28 N -0.114 5.114 29 N -0.084 5.084 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.028 0.972 36 H 0.045 0.955 37 H 0.206 0.794 38 H 0.060 0.940 39 H 0.248 0.752 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.263 0.737 44 H 0.224 0.776 45 H 0.185 0.815 46 H 0.311 0.689 Dipole moment (debyes) X Y Z Total from point charges -5.969 11.029 23.998 27.077 hybrid contribution 1.352 0.042 -1.518 2.034 sum -4.617 11.071 22.479 25.480 Atomic orbital electron populations 1.22098 0.93799 1.02840 1.02574 1.20841 0.94631 0.96638 0.82895 0.90419 1.21921 0.94839 1.01685 0.97522 1.20786 0.93267 0.94340 0.88854 1.42585 1.04451 1.65364 1.26559 1.19597 0.85325 1.27471 1.05233 0.90782 1.25555 1.01859 1.01404 0.97984 1.69805 1.34528 1.41946 1.15554 0.85176 0.80304 0.77984 0.76516 1.21341 1.22309 1.19501 1.46041 1.65978 1.14808 1.09097 1.20638 0.77064 0.87023 0.85018 1.90677 1.51731 1.16725 1.85268 1.20693 0.99863 0.92584 0.84464 0.87110 1.22096 0.93911 1.02035 1.03343 1.45489 1.73741 1.12061 1.03649 1.20808 0.76177 0.89462 0.84671 1.90868 1.49701 1.18492 1.84989 1.22504 1.13022 0.92069 0.75090 1.48414 1.15801 1.29736 1.16205 1.28814 0.99815 0.99940 0.82625 1.74891 1.06387 1.11228 1.27066 1.78657 1.10471 1.19751 1.02509 1.78932 1.14015 1.05110 1.10392 0.92842 0.90589 0.91513 0.90570 0.90224 0.97204 0.95458 0.79359 0.94026 0.75162 0.91283 0.90155 0.91127 0.73681 0.77639 0.81486 0.68881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.48 71.98 0.68 -2.18 16 2 C 0.15 3.33 2.57 44.99 0.12 3.44 16 3 H 0.08 1.92 7.58 -2.39 -0.02 1.90 16 4 C -0.12 -3.19 4.87 30.60 0.15 -3.04 16 5 C 0.15 5.47 6.15 86.38 0.53 6.01 16 6 N -0.75 -35.80 5.60 -343.45 -1.92 -37.73 16 7 C -0.24 -13.15 9.99 84.03 0.84 -12.31 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 9 C -0.08 -4.23 5.50 84.86 0.47 -3.76 16 10 N -0.97 -57.63 13.06 21.65 0.28 -57.35 16 11 Si 0.97 44.81 29.55 68.60 2.03 46.83 16 12 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 14 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 15 N -0.71 -13.28 4.42 -442.52 -1.96 -15.24 16 16 C 0.52 9.80 7.19 87.66 0.63 10.43 16 17 O -0.56 -13.32 15.50 -3.04 -0.05 -13.36 16 18 C 0.13 2.01 2.99 44.24 0.13 2.14 16 19 H 0.11 1.87 7.58 -2.39 -0.02 1.86 16 20 C -0.16 -2.27 9.38 71.98 0.68 -1.60 16 21 N -0.69 -7.50 4.95 -446.08 -2.21 -9.71 16 22 C 0.50 6.16 7.81 87.66 0.68 6.85 16 23 O -0.56 -13.27 15.37 -3.02 -0.05 -13.32 16 24 C 0.10 0.19 6.96 85.63 0.60 0.79 16 25 N -0.30 -3.58 3.19 -355.56 -1.13 -4.72 16 26 C 0.19 1.69 12.79 180.27 2.31 3.99 16 27 N -0.35 -7.27 12.36 -60.29 -0.74 -8.02 16 28 N -0.12 -3.22 13.43 37.01 0.50 -2.72 16 29 N -0.10 -2.27 12.30 37.02 0.46 -1.82 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.03 0.93 7.75 -2.39 -0.02 0.92 16 37 H 0.37 19.09 7.67 -92.71 -0.71 18.38 16 38 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 39 H 0.41 6.67 8.02 -92.71 -0.74 5.93 16 40 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 1.17 7.56 -2.38 -0.02 1.15 16 42 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.42 2.92 7.79 -92.72 -0.72 2.20 16 44 H 0.21 -2.09 8.08 -2.39 -0.02 -2.11 16 45 H 0.17 -0.51 8.14 -2.39 -0.02 -0.53 16 46 H 0.30 -1.64 8.06 -2.91 -0.02 -1.67 16 Total: -1.00 -89.24 396.24 1.87 -87.37 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -1.14 Total: 19.00 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 7.81 Total: 10.76 kcal Atomic # 7 Polarization: -130.56 SS G_CDS: -6.73 Total: -137.29 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.09 Total: -26.68 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -89.24 1.87 -87.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668273774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.197 kcal (2) G-P(sol) polarization free energy of solvation -89.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds