Wall clock time and date at job start Tue Mar 31 2020 22:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 N 1.46499 * 109.46879 * 119.99323 * 2 1 3 5 5 C 1.34776 * 120.00514 * 275.00122 * 4 2 1 6 6 O 1.21280 * 119.99441 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00271 * 180.02562 * 5 4 2 8 8 N 1.46502 * 109.46872 * 180.02562 * 7 5 4 9 9 C 1.34601 * 126.43866 * 125.00277 * 8 7 5 10 10 N 1.31072 * 106.67890 * 179.97438 * 9 8 7 11 11 N 1.28839 * 107.98922 * 359.97438 * 10 9 8 12 12 N 1.28739 * 109.40043 * 359.72902 * 11 10 9 13 13 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 14 14 O 1.21283 * 119.99803 * 239.99993 * 13 2 1 15 15 N 1.34777 * 119.99675 * 60.27868 * 13 2 1 16 16 C 1.46497 * 119.99525 * 179.72583 * 15 13 2 17 17 H 1.09001 * 109.47884 * 324.99780 * 16 15 13 18 18 C 1.53008 * 109.47335 * 84.99977 * 16 15 13 19 19 C 1.53001 * 109.47201 * 204.99403 * 16 15 13 20 20 C 1.53006 * 109.46654 * 64.99997 * 19 16 15 21 21 N 1.46505 * 109.46975 * 180.02562 * 20 19 16 22 22 C 1.36936 * 119.99945 * 180.02562 * 21 20 19 23 23 H 1.08001 * 119.99687 * 359.97438 * 22 21 20 24 24 C 1.38812 * 119.99741 * 180.02562 * 22 21 20 25 25 N 1.31613 * 120.00108 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99597 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47210 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47124 * 119.99844 * 26 24 22 29 29 H 1.48502 * 109.46687 * 239.99745 * 26 24 22 30 30 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 32 32 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 33 33 H 0.97004 * 119.99657 * 95.00197 * 4 2 1 34 34 H 1.09004 * 109.46842 * 299.99234 * 7 5 4 35 35 H 1.08989 * 109.47687 * 59.99974 * 7 5 4 36 36 H 1.08003 * 126.65970 * 0.02625 * 9 8 7 37 37 H 0.97000 * 119.99894 * 359.71837 * 15 13 2 38 38 H 1.08994 * 109.47201 * 59.99659 * 18 16 15 39 39 H 1.08995 * 109.47273 * 180.02562 * 18 16 15 40 40 H 1.08998 * 109.46811 * 299.99762 * 18 16 15 41 41 H 1.09000 * 109.47404 * 185.00044 * 19 16 15 42 42 H 1.09001 * 109.47466 * 305.00513 * 19 16 15 43 43 H 1.09000 * 109.47254 * 300.00139 * 20 19 16 44 44 H 1.09001 * 109.46763 * 60.00085 * 20 19 16 45 45 H 0.97001 * 119.99746 * 359.97438 * 21 20 19 46 46 H 0.97001 * 119.99665 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1469 -0.0181 2.3572 6 8 1.8581 1.1585 2.4116 7 6 2.6498 -0.7283 3.5876 8 7 2.6983 0.2131 4.7091 9 6 2.1044 0.0603 5.9073 10 7 2.3996 1.1254 6.6120 11 7 3.1368 1.8919 5.8847 12 7 3.3242 1.3409 4.7364 13 6 2.0324 -0.7105 -1.2304 14 8 2.7297 -1.6966 -1.1189 15 7 1.7114 -0.2468 -2.4545 16 6 2.2048 -0.9340 -3.6505 17 1 3.2035 -1.3263 -3.4584 18 6 1.2626 -2.0874 -4.0013 19 6 2.2604 0.0522 -4.8190 20 6 3.2956 1.1387 -4.5203 21 7 3.3484 2.0834 -5.6389 22 6 4.2093 3.1474 -5.5962 23 1 4.8490 3.2904 -4.7379 24 6 4.2590 4.0428 -6.6558 25 7 3.4791 3.8688 -7.7016 26 14 5.4340 5.4939 -6.5980 27 1 6.1954 5.4639 -5.3233 28 1 6.3782 5.4122 -7.7412 29 1 4.6619 6.7596 -6.6831 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 2.2489 -1.6317 1.1528 34 1 1.9774 -1.5505 3.8327 35 1 3.6490 -1.1201 3.3981 36 1 1.5023 -0.7776 6.2265 37 1 1.1537 0.5418 -2.5435 38 1 0.2640 -1.6952 -4.1935 39 1 1.6299 -2.5990 -4.8908 40 1 1.2230 -2.7901 -3.1689 41 1 2.5421 -0.4779 -5.7288 42 1 1.2810 0.5110 -4.9542 43 1 3.0138 1.6687 -3.6105 44 1 4.2750 0.6799 -4.3851 45 1 2.7741 1.9547 -6.4099 46 1 3.5136 4.4948 -8.4418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668273775.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:53 Heat of formation + Delta-G solvation = 61.202355 kcal Electronic energy + Delta-G solvation = -28773.125750 eV Core-core repulsion = 24543.455400 eV Total energy + Delta-G solvation = -4229.670350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.52275 -40.90336 -39.73806 -36.90838 -35.99084 -35.35156 -34.48084 -32.86191 -32.54999 -31.44312 -30.47752 -29.15040 -27.96953 -25.27117 -24.22147 -24.13038 -23.67146 -21.94676 -21.29574 -20.88691 -20.55567 -18.88901 -18.31598 -17.43538 -17.11924 -16.90589 -16.46729 -16.31757 -16.07089 -15.56651 -15.41970 -14.72365 -14.53079 -14.01939 -13.98091 -13.91752 -13.58369 -13.45724 -13.26948 -12.96345 -12.89990 -12.79437 -12.48458 -12.46475 -12.08603 -11.98242 -11.59679 -11.48306 -11.30536 -11.09302 -10.87694 -10.81669 -10.73098 -10.63624 -10.47153 -10.16476 -10.05036 -9.75863 -9.71501 -9.23508 -8.91358 -6.97346 -5.80795 -3.09874 0.83950 1.33990 1.81661 1.94894 2.29356 2.32273 3.01273 3.41847 3.48228 3.50123 3.59114 3.77593 3.85957 4.13467 4.27953 4.37393 4.53596 4.57061 4.71925 4.83517 5.01854 5.09114 5.10720 5.21977 5.28236 5.30465 5.49399 5.59065 5.61198 5.63130 5.65551 5.70711 5.81475 5.88573 6.12378 6.15519 6.24937 6.33046 6.72377 6.75921 6.77431 7.24861 7.47921 7.67526 7.91098 8.27190 8.38109 9.49589 10.06045 10.40494 11.42025 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.010798 B = 0.002196 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.502276 B =12746.122535 C =14841.986963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.124 3.876 3 H 0.120 0.880 4 N -0.703 5.703 5 C 0.504 3.496 6 O -0.506 6.506 7 C 0.098 3.902 8 N -0.302 5.302 9 C 0.159 3.841 10 N -0.306 5.306 11 N -0.076 5.076 12 N -0.061 5.061 13 C 0.514 3.486 14 O -0.542 6.542 15 N -0.709 5.709 16 C 0.145 3.855 17 H 0.090 0.910 18 C -0.160 4.160 19 C -0.136 4.136 20 C 0.154 3.846 21 N -0.734 5.734 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.014 4.014 25 N -0.933 5.933 26 Si 0.907 3.093 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.413 0.587 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.236 0.764 37 H 0.405 0.595 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.383 0.617 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.456 -19.227 21.425 30.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.016 3.984 3 H 0.138 0.862 4 N -0.358 5.358 5 C 0.287 3.713 6 O -0.379 6.379 7 C -0.028 4.028 8 N -0.105 5.105 9 C -0.139 4.139 10 N -0.153 5.153 11 N -0.070 5.070 12 N -0.047 5.047 13 C 0.299 3.701 14 O -0.420 6.420 15 N -0.360 5.360 16 C 0.040 3.960 17 H 0.108 0.892 18 C -0.219 4.219 19 C -0.174 4.174 20 C 0.026 3.974 21 N -0.378 5.378 22 C -0.371 4.371 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.582 5.582 26 Si 0.738 3.262 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.250 0.750 34 H 0.164 0.836 35 H 0.157 0.843 36 H 0.252 0.748 37 H 0.240 0.760 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.217 0.783 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.416 -17.683 21.808 29.310 hybrid contribution -0.158 -0.281 -0.785 0.849 sum -8.574 -17.964 21.022 28.951 Atomic orbital electron populations 1.22129 0.92376 1.03182 1.04070 1.20854 0.95882 0.98522 0.83154 0.86210 1.45517 1.67265 1.14913 1.08152 1.20113 0.79081 0.87696 0.84421 1.90890 1.47926 1.14877 1.84238 1.21946 1.07457 0.90114 0.83270 1.48165 1.33808 1.15559 1.12933 1.27754 1.01225 1.02002 0.82959 1.75009 1.12933 1.01373 1.26023 1.78720 1.12079 1.20564 0.95677 1.79078 1.14511 0.93826 1.17275 1.20364 0.80229 0.84642 0.84861 1.90688 1.38109 1.26566 1.86621 1.46065 1.52876 1.31825 1.05248 1.21051 0.98625 0.92497 0.83780 0.89177 1.22156 0.99731 0.98093 1.01880 1.22084 1.01159 0.97054 0.97109 1.20636 0.95174 0.89767 0.91829 1.42362 1.48105 1.28252 1.19076 1.19268 1.14270 1.01458 1.02131 0.91176 1.24750 1.00003 0.99533 0.96715 1.69665 1.41768 1.38584 1.08192 0.86117 0.80291 0.82520 0.77288 1.20498 1.21804 1.21791 0.91596 0.90825 0.90388 0.74988 0.83647 0.84277 0.74815 0.75984 0.92399 0.91355 0.92459 0.90056 0.91229 0.96450 0.96447 0.78307 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 9.38 37.16 0.35 -0.66 16 2 C 0.12 1.02 2.98 -69.08 -0.21 0.81 16 3 H 0.12 1.18 7.58 -51.92 -0.39 0.78 16 4 N -0.70 -4.53 4.95 -54.93 -0.27 -4.80 16 5 C 0.50 3.73 7.81 -10.99 -0.09 3.65 16 6 O -0.51 -6.35 15.37 5.56 0.09 -6.27 16 7 C 0.10 0.30 6.96 -5.19 -0.04 0.27 16 8 N -0.30 -2.27 3.19 -63.74 -0.20 -2.47 16 9 C 0.16 0.98 12.79 -90.39 -1.16 -0.18 16 10 N -0.31 -3.39 12.36 29.59 0.37 -3.02 16 11 N -0.08 -1.05 13.43 60.35 0.81 -0.23 16 12 N -0.06 -0.76 12.31 60.35 0.74 -0.01 16 13 C 0.51 5.24 7.18 -10.98 -0.08 5.16 16 14 O -0.54 -6.82 15.50 5.55 0.09 -6.73 16 15 N -0.71 -7.14 4.43 -53.80 -0.24 -7.38 16 16 C 0.14 1.66 2.57 -67.93 -0.17 1.48 16 17 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 18 C -0.16 -1.53 9.48 37.16 0.35 -1.17 16 19 C -0.14 -1.89 4.87 -26.73 -0.13 -2.02 16 20 C 0.15 2.92 6.15 -4.04 -0.02 2.89 16 21 N -0.73 -18.17 5.60 -59.90 -0.34 -18.50 16 22 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 23 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 24 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 25 N -0.93 -28.03 13.06 55.49 0.72 -27.30 16 26 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.43 7.57 -51.93 -0.39 0.04 16 33 H 0.41 1.89 7.79 -40.82 -0.32 1.58 16 34 H 0.15 -0.31 8.08 -51.93 -0.42 -0.73 16 35 H 0.14 0.15 8.14 -51.94 -0.42 -0.28 16 36 H 0.24 -0.03 8.06 -52.48 -0.42 -0.45 16 37 H 0.40 3.56 8.03 -40.82 -0.33 3.24 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.02 0.33 7.75 -51.93 -0.40 -0.07 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.38 9.89 7.67 -40.82 -0.31 9.58 16 46 H 0.25 7.38 8.31 -40.82 -0.34 7.05 16 LS Contribution 396.27 15.07 5.97 5.97 Total: -1.00 -40.34 396.27 -5.46 -45.79 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.73 Total: 4.61 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -1.44 Total: 2.86 kcal Atomic # 7 Polarization: -65.33 SS G_CDS: 1.59 Total: -63.73 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.17 Total: -13.00 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -40.34 -5.46 -45.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668273775.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.997 kcal (2) G-P(sol) polarization free energy of solvation -40.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds