Wall clock time and date at job start Tue Mar 31 2020 22:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 N 1.46499 * 109.46879 * 119.99323 * 2 1 3 5 5 C 1.34776 * 120.00514 * 275.00122 * 4 2 1 6 6 O 1.21280 * 119.99441 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00271 * 180.02562 * 5 4 2 8 8 N 1.46502 * 109.46872 * 180.02562 * 7 5 4 9 9 C 1.34601 * 126.43866 * 125.00277 * 8 7 5 10 10 N 1.31072 * 106.67890 * 179.97438 * 9 8 7 11 11 N 1.28839 * 107.98922 * 359.97438 * 10 9 8 12 12 N 1.28739 * 109.40043 * 359.72902 * 11 10 9 13 13 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 14 14 O 1.21283 * 119.99803 * 239.99993 * 13 2 1 15 15 N 1.34777 * 119.99675 * 60.27868 * 13 2 1 16 16 C 1.46497 * 119.99525 * 179.72583 * 15 13 2 17 17 H 1.09001 * 109.47884 * 324.99780 * 16 15 13 18 18 C 1.53008 * 109.47335 * 84.99977 * 16 15 13 19 19 C 1.53001 * 109.47201 * 204.99403 * 16 15 13 20 20 C 1.53006 * 109.46654 * 64.99997 * 19 16 15 21 21 N 1.46505 * 109.46975 * 180.02562 * 20 19 16 22 22 C 1.36936 * 119.99945 * 180.02562 * 21 20 19 23 23 H 1.08001 * 119.99687 * 359.97438 * 22 21 20 24 24 C 1.38812 * 119.99741 * 180.02562 * 22 21 20 25 25 N 1.31613 * 120.00108 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99597 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47210 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47124 * 119.99844 * 26 24 22 29 29 H 1.48502 * 109.46687 * 239.99745 * 26 24 22 30 30 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 32 32 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 33 33 H 0.97004 * 119.99657 * 95.00197 * 4 2 1 34 34 H 1.09004 * 109.46842 * 299.99234 * 7 5 4 35 35 H 1.08989 * 109.47687 * 59.99974 * 7 5 4 36 36 H 1.08003 * 126.65970 * 0.02625 * 9 8 7 37 37 H 0.97000 * 119.99894 * 359.71837 * 15 13 2 38 38 H 1.08994 * 109.47201 * 59.99659 * 18 16 15 39 39 H 1.08995 * 109.47273 * 180.02562 * 18 16 15 40 40 H 1.08998 * 109.46811 * 299.99762 * 18 16 15 41 41 H 1.09000 * 109.47404 * 185.00044 * 19 16 15 42 42 H 1.09001 * 109.47466 * 305.00513 * 19 16 15 43 43 H 1.09000 * 109.47254 * 300.00139 * 20 19 16 44 44 H 1.09001 * 109.46763 * 60.00085 * 20 19 16 45 45 H 0.97001 * 119.99746 * 359.97438 * 21 20 19 46 46 H 0.97001 * 119.99665 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1469 -0.0181 2.3572 6 8 1.8581 1.1585 2.4116 7 6 2.6498 -0.7283 3.5876 8 7 2.6983 0.2131 4.7091 9 6 2.1044 0.0603 5.9073 10 7 2.3996 1.1254 6.6120 11 7 3.1368 1.8919 5.8847 12 7 3.3242 1.3409 4.7364 13 6 2.0324 -0.7105 -1.2304 14 8 2.7297 -1.6966 -1.1189 15 7 1.7114 -0.2468 -2.4545 16 6 2.2048 -0.9340 -3.6505 17 1 3.2035 -1.3263 -3.4584 18 6 1.2626 -2.0874 -4.0013 19 6 2.2604 0.0522 -4.8190 20 6 3.2956 1.1387 -4.5203 21 7 3.3484 2.0834 -5.6389 22 6 4.2093 3.1474 -5.5962 23 1 4.8490 3.2904 -4.7379 24 6 4.2590 4.0428 -6.6558 25 7 3.4791 3.8688 -7.7016 26 14 5.4340 5.4939 -6.5980 27 1 6.1954 5.4639 -5.3233 28 1 6.3782 5.4122 -7.7412 29 1 4.6619 6.7596 -6.6831 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 2.2489 -1.6317 1.1528 34 1 1.9774 -1.5505 3.8327 35 1 3.6490 -1.1201 3.3981 36 1 1.5023 -0.7776 6.2265 37 1 1.1537 0.5418 -2.5435 38 1 0.2640 -1.6952 -4.1935 39 1 1.6299 -2.5990 -4.8908 40 1 1.2230 -2.7901 -3.1689 41 1 2.5421 -0.4779 -5.7288 42 1 1.2810 0.5110 -4.9542 43 1 3.0138 1.6687 -3.6105 44 1 4.2750 0.6799 -4.3851 45 1 2.7741 1.9547 -6.4099 46 1 3.5136 4.4948 -8.4418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668273775.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:53 Heat of formation + Delta-G solvation = 28.058827 kcal Electronic energy + Delta-G solvation = -28774.562961 eV Core-core repulsion = 24543.455400 eV Total energy + Delta-G solvation = -4231.107561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.16799 -41.62028 -40.50027 -38.00966 -36.64194 -36.20257 -35.98473 -33.80860 -33.47461 -32.78960 -31.44401 -29.65462 -29.40038 -26.06854 -25.72210 -24.86206 -24.42267 -23.29730 -22.29755 -21.70925 -21.36315 -19.60637 -19.14831 -18.79553 -17.96897 -17.72725 -17.21382 -16.92266 -16.73099 -16.66182 -16.28230 -16.13384 -15.50301 -15.29843 -15.22156 -14.92306 -14.58945 -14.47884 -14.26154 -14.04112 -13.61741 -13.40883 -13.33675 -13.14389 -13.10306 -12.93347 -12.88259 -12.68074 -12.39512 -12.25048 -12.22125 -12.14079 -12.01636 -11.93192 -11.65015 -11.51079 -11.11774 -11.00786 -10.95270 -10.37803 -10.12551 -9.03316 -7.99564 -5.28026 0.26531 0.93781 1.26200 1.28887 1.45008 1.45474 1.49095 1.55427 1.73856 2.29163 2.52374 3.22133 3.34352 3.45381 3.49662 3.56963 3.68203 3.95945 4.01302 4.02185 4.04595 4.10312 4.16447 4.37920 4.38855 4.56870 4.59686 4.65846 4.71565 4.75691 4.76578 4.87593 5.00615 5.13752 5.14124 5.20452 5.21372 5.28381 5.35444 5.45952 5.52053 6.23801 6.27465 6.43326 6.97160 7.08834 7.30460 7.58209 8.05925 8.29259 9.23723 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.010798 B = 0.002196 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.502276 B =12746.122535 C =14841.986963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.128 3.872 3 H 0.099 0.901 4 N -0.693 5.693 5 C 0.502 3.498 6 O -0.565 6.565 7 C 0.097 3.903 8 N -0.300 5.300 9 C 0.187 3.813 10 N -0.349 5.349 11 N -0.120 5.120 12 N -0.100 5.100 13 C 0.517 3.483 14 O -0.565 6.565 15 N -0.707 5.707 16 C 0.153 3.847 17 H 0.072 0.928 18 C -0.151 4.151 19 C -0.121 4.121 20 C 0.152 3.848 21 N -0.745 5.745 22 C -0.247 4.247 23 H 0.069 0.931 24 C -0.073 4.073 25 N -0.965 5.965 26 Si 0.970 3.030 27 H -0.271 1.271 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.425 0.575 34 H 0.211 0.789 35 H 0.165 0.835 36 H 0.299 0.701 37 H 0.412 0.588 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.021 0.979 44 H 0.007 0.993 45 H 0.376 0.624 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.483 -21.767 22.451 32.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.019 3.981 3 H 0.117 0.883 4 N -0.349 5.349 5 C 0.287 3.713 6 O -0.442 6.442 7 C -0.026 4.026 8 N -0.102 5.102 9 C -0.111 4.111 10 N -0.196 5.196 11 N -0.115 5.115 12 N -0.088 5.088 13 C 0.303 3.697 14 O -0.444 6.444 15 N -0.359 5.359 16 C 0.048 3.952 17 H 0.091 0.909 18 C -0.210 4.210 19 C -0.159 4.159 20 C 0.026 3.974 21 N -0.388 5.388 22 C -0.379 4.379 23 H 0.087 0.913 24 C -0.265 4.265 25 N -0.616 5.616 26 Si 0.799 3.201 27 H -0.195 1.195 28 H -0.218 1.218 29 H -0.218 1.218 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.264 0.736 34 H 0.228 0.772 35 H 0.182 0.818 36 H 0.314 0.686 37 H 0.248 0.752 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.039 0.961 44 H 0.025 0.975 45 H 0.208 0.792 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.437 -20.278 22.850 31.975 hybrid contribution 0.141 0.377 -1.108 1.179 sum -9.296 -19.902 21.742 30.906 Atomic orbital electron populations 1.22073 0.90649 1.04103 1.04067 1.20737 0.97147 0.97256 0.82985 0.88283 1.45466 1.66630 1.15303 1.07466 1.20853 0.77823 0.87105 0.85532 1.90880 1.50613 1.17540 1.85203 1.22510 1.10341 0.89656 0.80115 1.48432 1.32766 1.14713 1.14306 1.28847 0.99054 1.01657 0.81508 1.74885 1.14094 1.03163 1.27449 1.78673 1.13879 1.22327 0.96578 1.78973 1.16350 0.96108 1.17332 1.20628 0.79607 0.84273 0.85206 1.90675 1.39101 1.27693 1.86969 1.46039 1.52820 1.32023 1.05023 1.20860 0.98626 0.92433 0.83234 0.90943 1.22070 0.99707 0.97051 1.02131 1.21925 0.99785 0.95923 0.98234 1.20792 0.96299 0.90123 0.90211 1.42560 1.47410 1.28574 1.20289 1.19603 1.14243 1.02178 1.01846 0.91258 1.25524 1.01982 1.02312 0.96705 1.69795 1.43430 1.39580 1.08792 0.85131 0.78310 0.79256 0.77413 1.19523 1.21790 1.21785 0.90113 0.91571 0.89688 0.73590 0.77201 0.81758 0.68595 0.75170 0.91111 0.90770 0.92354 0.90056 0.90243 0.96096 0.97513 0.79169 0.93873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.38 71.98 0.68 -0.99 16 2 C 0.13 1.97 2.98 44.24 0.13 2.10 16 3 H 0.10 2.00 7.58 -2.38 -0.02 1.98 16 4 N -0.69 -7.66 4.95 -446.10 -2.21 -9.87 16 5 C 0.50 6.62 7.81 87.66 0.68 7.31 16 6 O -0.56 -14.30 15.37 -3.03 -0.05 -14.34 16 7 C 0.10 0.25 6.96 85.63 0.60 0.85 16 8 N -0.30 -3.88 3.19 -355.57 -1.13 -5.01 16 9 C 0.19 1.75 12.79 180.27 2.31 4.06 16 10 N -0.35 -7.54 12.36 -60.29 -0.74 -8.29 16 11 N -0.12 -3.42 13.43 37.01 0.50 -2.92 16 12 N -0.10 -2.54 12.31 37.02 0.46 -2.08 16 13 C 0.52 9.89 7.18 87.66 0.63 10.52 16 14 O -0.57 -13.41 15.50 -3.04 -0.05 -13.45 16 15 N -0.71 -13.35 4.43 -442.52 -1.96 -15.31 16 16 C 0.15 3.30 2.57 45.00 0.12 3.42 16 17 H 0.07 1.86 7.58 -2.39 -0.02 1.84 16 18 C -0.15 -2.53 9.48 71.98 0.68 -1.85 16 19 C -0.12 -3.23 4.87 30.60 0.15 -3.08 16 20 C 0.15 5.76 6.15 86.38 0.53 6.29 16 21 N -0.75 -37.10 5.60 -343.43 -1.92 -39.03 16 22 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 23 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 24 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 25 N -0.97 -58.49 13.06 21.65 0.28 -58.21 16 26 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 27 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 28 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 29 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 30 H 0.08 0.66 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.08 0.81 7.57 -2.38 -0.02 0.79 16 33 H 0.42 2.73 7.79 -92.71 -0.72 2.01 16 34 H 0.21 -2.25 8.08 -2.39 -0.02 -2.27 16 35 H 0.17 -0.30 8.14 -2.39 -0.02 -0.32 16 36 H 0.30 -1.79 8.06 -2.91 -0.02 -1.82 16 37 H 0.41 6.72 8.03 -92.71 -0.74 5.97 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.02 0.79 7.75 -2.39 -0.02 0.77 16 44 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.38 19.58 7.67 -92.71 -0.71 18.86 16 46 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -93.27 396.27 1.87 -91.41 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -1.14 Total: 16.65 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 7.81 Total: 11.88 kcal Atomic # 7 Polarization: -133.98 SS G_CDS: -6.73 Total: -140.72 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.09 Total: -27.80 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -93.27 1.87 -91.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668273775.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.466 kcal (2) G-P(sol) polarization free energy of solvation -93.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds