Wall clock time and date at job start Tue Mar 31 2020 23:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34780 * 119.99986 * 2 1 4 4 O 1.21604 * 119.99519 * 185.60373 * 3 2 1 5 5 C 1.47292 * 120.00113 * 5.60817 * 3 2 1 6 6 F 1.35102 * 119.99924 * 6.03230 * 5 3 2 7 7 C 1.33113 * 120.00063 * 186.03475 * 5 3 2 8 8 C 1.51446 * 126.33896 * 359.68752 * 7 5 3 9 9 C 1.54282 * 106.85336 * 180.24222 * 8 7 5 10 10 C 1.54991 * 103.65826 * 23.48355 * 9 8 7 11 11 C 1.51841 * 126.34310 * 180.02562 * 7 5 3 12 12 C 1.46500 * 119.99674 * 180.02562 * 2 1 3 13 13 C 1.53511 * 114.16920 * 299.99179 * 12 2 1 14 14 N 1.47477 * 87.93281 * 87.81832 * 13 12 2 15 15 C 1.46899 * 111.00131 * 138.70289 * 14 13 12 16 16 C 1.50705 * 109.46665 * 169.99945 * 15 14 13 17 17 O 1.21287 * 120.00150 * 0.02562 * 16 15 14 18 18 N 1.34783 * 119.99300 * 179.97438 * 16 15 14 19 19 C 1.37096 * 119.99286 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00717 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99775 * 180.02562 * 19 18 16 22 22 N 1.31410 * 119.99638 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00081 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47257 * 89.99960 * 23 21 19 25 25 H 1.48505 * 109.47030 * 209.99988 * 23 21 19 26 26 H 1.48496 * 109.46997 * 329.99605 * 23 21 19 27 27 C 1.47478 * 87.83458 * 27.00868 * 14 13 12 28 28 H 1.09003 * 109.46822 * 275.59219 * 1 2 3 29 29 H 1.09002 * 109.47160 * 35.58984 * 1 2 3 30 30 H 1.08994 * 109.47626 * 155.59273 * 1 2 3 31 31 H 1.09006 * 109.98833 * 299.72845 * 8 7 5 32 32 H 1.08998 * 109.98579 * 61.03084 * 8 7 5 33 33 H 1.08997 * 110.79554 * 264.85945 * 9 8 7 34 34 H 1.08996 * 110.43119 * 141.93002 * 9 8 7 35 35 H 1.08993 * 110.83602 * 204.49312 * 10 9 8 36 36 H 1.08996 * 110.83241 * 80.90849 * 10 9 8 37 37 H 1.08999 * 110.44464 * 274.92504 * 11 7 5 38 38 H 1.08999 * 110.43925 * 37.32371 * 11 7 5 39 39 H 1.09007 * 113.25656 * 167.04911 * 12 2 1 40 40 H 1.09003 * 113.47834 * 333.04644 * 13 12 2 41 41 H 1.09004 * 113.47426 * 202.58513 * 13 12 2 42 42 H 1.09001 * 109.46754 * 50.00350 * 15 14 13 43 43 H 1.08997 * 109.47121 * 289.99643 * 15 14 13 44 44 H 0.96989 * 120.00174 * 0.02562 * 18 16 15 45 45 H 0.97000 * 119.99959 * 180.02562 * 22 21 19 46 46 H 1.09000 * 113.47599 * 87.75770 * 27 14 13 47 47 H 1.09001 * 113.47931 * 218.22309 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3505 1.1696 -0.1028 5 6 1.4077 2.4398 0.1247 6 9 0.0775 2.4342 0.3610 7 6 2.0575 3.5953 0.0044 8 6 3.5398 3.7687 -0.2531 9 6 3.8103 5.2868 -0.3040 10 6 2.6377 5.8949 0.5068 11 6 1.4511 4.9836 0.1069 12 6 2.1974 -1.2688 -0.0006 13 6 1.9053 -2.1637 1.2120 14 7 0.7752 -2.7315 0.4535 15 6 0.6941 -4.1863 0.6397 16 6 -0.6001 -4.6956 0.0593 17 8 -1.3780 -3.9227 -0.4590 18 7 -0.8925 -6.0101 0.1152 19 6 -2.0696 -6.4735 -0.4133 20 1 -2.7624 -5.7853 -0.8748 21 6 -2.3714 -7.8286 -0.3552 22 7 -1.5282 -8.6660 0.2058 23 14 -3.9748 -8.4601 -1.0759 24 1 -3.7686 -8.8210 -2.5015 25 1 -4.4184 -9.6595 -0.3209 26 1 -5.0121 -7.4021 -0.9781 27 6 1.5087 -2.3967 -0.7814 28 1 -0.3633 0.1001 1.0228 29 1 -0.3633 0.8357 -0.5981 30 1 -0.3634 -0.9357 -0.4246 31 1 4.1139 3.3128 0.5536 32 1 3.8083 3.3124 -1.2058 33 1 3.7934 5.6486 -1.3320 34 1 4.7643 5.5193 0.1692 35 1 2.4528 6.9263 0.2068 36 1 2.8320 5.8302 1.5773 37 1 1.0417 5.2922 -0.8550 38 1 0.6768 5.0050 0.8738 39 1 3.2579 -1.1535 -0.2250 40 1 1.5981 -1.6079 2.0980 41 1 2.6954 -2.8854 1.4194 42 1 0.7314 -4.4190 1.7039 43 1 1.5325 -4.6647 0.1335 44 1 -0.2702 -6.6282 0.5293 45 1 -1.7387 -9.6120 0.2461 46 1 2.1929 -3.1807 -1.1061 47 1 0.8653 -2.0385 -1.5851 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671119867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:21 Heat of formation + Delta-G solvation = -49.356054 kcal Electronic energy + Delta-G solvation = -29422.380828 eV Core-core repulsion = 25135.703593 eV Total energy + Delta-G solvation = -4286.677235 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.13660 -40.87378 -39.40877 -38.15594 -37.64553 -34.86724 -33.86897 -31.66412 -31.25930 -30.06506 -29.19907 -27.09516 -26.33587 -25.89052 -25.04521 -23.49547 -21.87502 -21.12737 -19.31726 -19.13580 -18.83320 -17.93414 -17.48208 -16.75758 -16.56912 -16.25595 -15.99207 -15.66950 -15.47666 -15.03142 -14.93870 -14.52874 -14.39717 -13.83764 -13.71702 -13.67949 -13.28396 -13.23315 -13.01772 -12.77056 -12.53572 -12.32833 -12.05758 -11.93533 -11.62924 -11.58281 -11.52438 -11.43503 -11.38135 -11.08456 -11.00675 -10.95012 -10.74557 -10.39386 -10.21253 -9.99405 -9.49785 -9.22384 -8.82546 -8.62258 -8.20846 -7.95825 -6.41370 -3.82064 0.88221 2.66816 2.81474 3.17736 3.26323 3.32283 3.87067 3.90223 3.91533 3.97720 4.22942 4.25363 4.42693 4.61597 4.71851 4.80991 4.89193 4.98038 5.03470 5.16568 5.18669 5.30050 5.34642 5.37069 5.38487 5.45562 5.57029 5.58597 5.62601 5.64057 5.69964 5.71330 5.73763 5.81261 5.83505 5.92057 5.94192 6.07240 6.22760 6.27594 6.47281 6.53654 7.08366 7.26120 7.55380 7.84896 8.06352 8.62377 9.18781 9.55121 10.07228 10.76484 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031519 B = 0.001968 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.141899 B =14222.544370 C =14820.473997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.577 5.577 3 C 0.551 3.449 4 O -0.528 6.528 5 C -0.004 4.004 6 F -0.130 7.130 7 C -0.078 4.078 8 C -0.079 4.079 9 C -0.128 4.128 10 C -0.123 4.123 11 C -0.096 4.096 12 C 0.114 3.886 13 C -0.017 4.017 14 N -0.438 5.438 15 C 0.007 3.993 16 C 0.447 3.553 17 O -0.576 6.576 18 N -0.567 5.567 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C -0.005 4.005 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.391 0.609 45 H 0.271 0.729 46 H 0.082 0.918 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.901 23.918 1.317 26.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.307 5.307 3 C 0.339 3.661 4 O -0.407 6.407 5 C -0.026 4.026 6 F -0.109 7.109 7 C -0.081 4.081 8 C -0.116 4.116 9 C -0.166 4.166 10 C -0.160 4.160 11 C -0.133 4.133 12 C 0.009 3.991 13 C -0.147 4.147 14 N -0.160 5.160 15 C -0.125 4.125 16 C 0.232 3.768 17 O -0.459 6.459 18 N -0.204 5.204 19 C -0.427 4.427 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.135 4.135 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.133 0.867 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.224 0.776 45 H 0.081 0.919 46 H 0.100 0.900 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.202 24.400 1.065 26.870 hybrid contribution -0.111 -1.510 -0.006 1.514 sum 11.092 22.890 1.059 25.458 Atomic orbital electron populations 1.22331 0.77184 1.05227 1.02807 1.47326 1.08081 1.04211 1.71108 1.18192 0.87083 0.83278 0.77529 1.90788 1.12751 1.86604 1.50577 1.18766 0.78299 0.93470 1.12073 1.91472 1.30173 1.96909 1.92341 1.23007 0.98120 0.93415 0.93589 1.21149 0.90510 0.96084 1.03809 1.22480 0.98704 0.94797 1.00611 1.22523 0.94296 0.98703 1.00505 1.21500 0.98439 0.90507 1.02825 1.22099 0.97016 0.82765 0.97236 1.24345 0.94231 0.97575 0.98536 1.68871 1.32084 1.11379 1.03640 1.22518 0.98152 0.89809 1.02007 1.19650 0.88411 0.83143 0.85583 1.90509 1.50956 1.55755 1.48721 1.41874 1.19994 1.05991 1.52547 1.19688 0.96561 0.92222 1.34261 0.87963 1.25255 0.99374 0.95826 0.97563 1.69611 1.36447 1.03954 1.44420 0.85861 0.81488 0.78286 0.78677 1.20457 1.20942 1.19426 1.24289 0.96640 0.96417 0.96123 0.92238 0.90841 0.87755 0.88973 0.89491 0.91153 0.90909 0.90753 0.90951 0.89169 0.90143 0.86718 0.89474 0.90267 0.89360 0.92109 0.77568 0.91918 0.90046 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 8.40 59.84 0.50 1.39 16 2 N -0.58 -7.62 3.11 -174.95 -0.54 -8.16 16 3 C 0.55 7.27 7.61 -12.58 -0.10 7.18 16 4 O -0.53 -7.63 13.66 5.27 0.07 -7.55 16 5 C 0.00 -0.05 7.09 -37.69 -0.27 -0.31 16 6 F -0.13 -1.54 13.48 2.25 0.03 -1.51 16 7 C -0.08 -0.76 6.16 -100.20 -0.62 -1.37 16 8 C -0.08 -0.69 4.82 -26.85 -0.13 -0.82 16 9 C -0.13 -0.79 6.88 -25.01 -0.17 -0.96 16 10 C -0.12 -0.71 6.94 -24.69 -0.17 -0.88 16 11 C -0.10 -0.69 6.44 -26.33 -0.17 -0.86 16 12 C 0.11 1.43 4.68 -67.72 -0.32 1.12 16 13 C -0.02 -0.21 7.31 -7.56 -0.06 -0.26 16 14 N -0.44 -6.94 4.29 -246.13 -1.06 -7.99 16 15 C 0.01 0.12 5.30 -4.97 -0.03 0.10 16 16 C 0.45 10.47 7.85 -10.98 -0.09 10.38 16 17 O -0.58 -15.51 16.01 5.55 0.09 -15.42 16 18 N -0.57 -14.32 5.29 -10.96 -0.06 -14.38 16 19 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 20 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.57 13.05 55.50 0.72 -23.84 16 23 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 C 0.00 -0.07 6.72 -7.56 -0.05 -0.12 16 28 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 29 H 0.07 0.91 5.97 -51.93 -0.31 0.60 16 30 H 0.10 1.64 5.51 -51.93 -0.29 1.36 16 31 H 0.09 0.90 7.55 -51.93 -0.39 0.51 16 32 H 0.09 0.83 7.82 -51.93 -0.41 0.43 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.11 1.38 7.26 -51.93 -0.38 1.00 16 40 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.08 0.84 7.91 -51.93 -0.41 0.43 16 42 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 43 H 0.06 0.92 7.30 -51.93 -0.38 0.55 16 44 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.08 1.02 7.42 -51.93 -0.39 0.64 16 47 H 0.09 1.43 7.36 -51.93 -0.38 1.05 16 LS Contribution 381.76 15.07 5.75 5.75 Total: -1.00 -31.92 381.76 -8.87 -40.79 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -6.96 Total: 9.63 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -1.90 Total: 6.61 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.93 Total: -54.38 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: 0.16 Total: -22.98 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.03 Total: -1.51 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.92 -8.87 -40.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671119867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.570 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds