Wall clock time and date at job start Tue Mar 31 2020 23:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34780 * 119.99986 * 2 1 4 4 O 1.21604 * 119.99519 * 185.60373 * 3 2 1 5 5 C 1.47292 * 120.00113 * 5.60817 * 3 2 1 6 6 F 1.35102 * 119.99924 * 6.03230 * 5 3 2 7 7 C 1.33113 * 120.00063 * 186.03475 * 5 3 2 8 8 C 1.51446 * 126.33896 * 359.68752 * 7 5 3 9 9 C 1.54282 * 106.85336 * 180.24222 * 8 7 5 10 10 C 1.54991 * 103.65826 * 23.48355 * 9 8 7 11 11 C 1.51841 * 126.34310 * 180.02562 * 7 5 3 12 12 C 1.46500 * 119.99674 * 180.02562 * 2 1 3 13 13 C 1.53511 * 114.16920 * 299.99179 * 12 2 1 14 14 N 1.47477 * 87.93281 * 87.81832 * 13 12 2 15 15 C 1.46899 * 111.00131 * 138.70289 * 14 13 12 16 16 C 1.50705 * 109.46665 * 169.99945 * 15 14 13 17 17 O 1.21287 * 120.00150 * 0.02562 * 16 15 14 18 18 N 1.34783 * 119.99300 * 179.97438 * 16 15 14 19 19 C 1.37096 * 119.99286 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00717 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99775 * 180.02562 * 19 18 16 22 22 N 1.31410 * 119.99638 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00081 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47257 * 89.99960 * 23 21 19 25 25 H 1.48505 * 109.47030 * 209.99988 * 23 21 19 26 26 H 1.48496 * 109.46997 * 329.99605 * 23 21 19 27 27 C 1.47478 * 87.83458 * 27.00868 * 14 13 12 28 28 H 1.09003 * 109.46822 * 275.59219 * 1 2 3 29 29 H 1.09002 * 109.47160 * 35.58984 * 1 2 3 30 30 H 1.08994 * 109.47626 * 155.59273 * 1 2 3 31 31 H 1.09006 * 109.98833 * 299.72845 * 8 7 5 32 32 H 1.08998 * 109.98579 * 61.03084 * 8 7 5 33 33 H 1.08997 * 110.79554 * 264.85945 * 9 8 7 34 34 H 1.08996 * 110.43119 * 141.93002 * 9 8 7 35 35 H 1.08993 * 110.83602 * 204.49312 * 10 9 8 36 36 H 1.08996 * 110.83241 * 80.90849 * 10 9 8 37 37 H 1.08999 * 110.44464 * 274.92504 * 11 7 5 38 38 H 1.08999 * 110.43925 * 37.32371 * 11 7 5 39 39 H 1.09007 * 113.25656 * 167.04911 * 12 2 1 40 40 H 1.09003 * 113.47834 * 333.04644 * 13 12 2 41 41 H 1.09004 * 113.47426 * 202.58513 * 13 12 2 42 42 H 1.09001 * 109.46754 * 50.00350 * 15 14 13 43 43 H 1.08997 * 109.47121 * 289.99643 * 15 14 13 44 44 H 0.96989 * 120.00174 * 0.02562 * 18 16 15 45 45 H 0.97000 * 119.99959 * 180.02562 * 22 21 19 46 46 H 1.09000 * 113.47599 * 87.75770 * 27 14 13 47 47 H 1.09001 * 113.47931 * 218.22309 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3505 1.1696 -0.1028 5 6 1.4077 2.4398 0.1247 6 9 0.0775 2.4342 0.3610 7 6 2.0575 3.5953 0.0044 8 6 3.5398 3.7687 -0.2531 9 6 3.8103 5.2868 -0.3040 10 6 2.6377 5.8949 0.5068 11 6 1.4511 4.9836 0.1069 12 6 2.1974 -1.2688 -0.0006 13 6 1.9053 -2.1637 1.2120 14 7 0.7752 -2.7315 0.4535 15 6 0.6941 -4.1863 0.6397 16 6 -0.6001 -4.6956 0.0593 17 8 -1.3780 -3.9227 -0.4590 18 7 -0.8925 -6.0101 0.1152 19 6 -2.0696 -6.4735 -0.4133 20 1 -2.7624 -5.7853 -0.8748 21 6 -2.3714 -7.8286 -0.3552 22 7 -1.5282 -8.6660 0.2058 23 14 -3.9748 -8.4601 -1.0759 24 1 -3.7686 -8.8210 -2.5015 25 1 -4.4184 -9.6595 -0.3209 26 1 -5.0121 -7.4021 -0.9781 27 6 1.5087 -2.3967 -0.7814 28 1 -0.3633 0.1001 1.0228 29 1 -0.3633 0.8357 -0.5981 30 1 -0.3634 -0.9357 -0.4246 31 1 4.1139 3.3128 0.5536 32 1 3.8083 3.3124 -1.2058 33 1 3.7934 5.6486 -1.3320 34 1 4.7643 5.5193 0.1692 35 1 2.4528 6.9263 0.2068 36 1 2.8320 5.8302 1.5773 37 1 1.0417 5.2922 -0.8550 38 1 0.6768 5.0050 0.8738 39 1 3.2579 -1.1535 -0.2250 40 1 1.5981 -1.6079 2.0980 41 1 2.6954 -2.8854 1.4194 42 1 0.7314 -4.4190 1.7039 43 1 1.5325 -4.6647 0.1335 44 1 -0.2702 -6.6282 0.5293 45 1 -1.7387 -9.6120 0.2461 46 1 2.1929 -3.1807 -1.1061 47 1 0.8653 -2.0385 -1.5851 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671119867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:21 Heat of formation + Delta-G solvation = -70.463080 kcal Electronic energy + Delta-G solvation = -29423.296097 eV Core-core repulsion = 25135.703593 eV Total energy + Delta-G solvation = -4287.592505 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.00977 -41.98564 -40.50195 -39.59754 -38.70240 -36.08003 -35.78535 -33.28199 -32.43083 -31.37334 -29.79826 -28.24872 -27.59205 -26.92354 -26.47743 -24.84891 -22.81852 -21.68086 -21.09394 -20.11059 -19.92281 -19.73263 -18.51730 -17.85573 -17.61210 -17.44070 -17.07996 -16.76309 -16.51747 -16.45662 -16.18042 -15.91268 -15.63993 -15.41253 -14.90988 -14.73999 -14.39524 -14.27896 -14.17004 -13.74300 -13.54380 -13.40849 -13.37625 -13.22696 -12.98936 -12.82273 -12.62913 -12.42862 -12.42016 -12.20878 -12.09384 -12.01740 -11.97190 -11.92230 -11.49292 -11.48865 -10.99183 -10.37538 -10.11771 -9.99976 -9.74181 -9.61311 -8.46306 -5.94592 0.02105 1.37346 1.40882 1.53523 1.69290 1.83240 2.07506 2.28435 2.79816 2.95848 3.19682 3.20174 3.34700 3.43617 3.68209 3.74452 3.98355 4.13209 4.13723 4.22025 4.24071 4.30606 4.38331 4.41891 4.44306 4.52501 4.58718 4.61338 4.63849 4.75689 4.78595 4.80542 4.90004 4.99637 5.03854 5.09638 5.13094 5.20793 5.29815 5.32342 5.41130 5.43592 5.51573 5.84467 6.05843 6.22212 6.61685 6.82914 7.14075 7.58164 8.14574 8.71118 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031519 B = 0.001968 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.141899 B =14222.544370 C =14820.473997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.582 5.582 3 C 0.549 3.451 4 O -0.545 6.545 5 C -0.035 4.035 6 F -0.135 7.135 7 C -0.061 4.061 8 C -0.082 4.082 9 C -0.123 4.123 10 C -0.118 4.118 11 C -0.099 4.099 12 C 0.120 3.880 13 C -0.005 4.005 14 N -0.466 5.466 15 C 0.021 3.979 16 C 0.443 3.557 17 O -0.617 6.617 18 N -0.577 5.577 19 C -0.331 4.331 20 H 0.077 0.923 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.274 1.274 27 C -0.005 4.005 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.126 0.874 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.100 0.900 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.070 25.066 1.635 28.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.312 5.312 3 C 0.339 3.661 4 O -0.425 6.425 5 C -0.057 4.057 6 F -0.114 7.114 7 C -0.064 4.064 8 C -0.119 4.119 9 C -0.160 4.160 10 C -0.155 4.155 11 C -0.135 4.135 12 C 0.015 3.985 13 C -0.135 4.135 14 N -0.189 5.189 15 C -0.111 4.111 16 C 0.231 3.769 17 O -0.502 6.502 18 N -0.215 5.215 19 C -0.461 4.461 20 H 0.095 0.905 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.815 3.185 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.199 1.199 27 C -0.134 4.134 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.144 0.856 40 H 0.104 0.896 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.106 0.894 44 H 0.229 0.771 45 H 0.086 0.914 46 H 0.118 0.882 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.397 25.546 1.398 28.430 hybrid contribution -0.422 -1.766 -0.118 1.819 sum 11.975 23.781 1.281 26.656 Atomic orbital electron populations 1.22125 0.77566 1.04091 1.02431 1.47398 1.07877 1.04685 1.71259 1.18434 0.87023 0.83673 0.76953 1.90768 1.13307 1.86911 1.51532 1.18678 0.78379 0.93420 1.15187 1.91449 1.30365 1.96884 1.92730 1.23439 0.98752 0.94073 0.90125 1.21210 0.89683 0.98171 1.02792 1.22484 0.99500 0.92478 1.01566 1.22544 0.93051 0.99362 1.00539 1.21654 0.99145 0.89096 1.03630 1.22088 0.97186 0.82253 0.96968 1.24374 0.93605 0.97568 0.97937 1.68845 1.34429 1.10347 1.05289 1.22400 0.95002 0.90902 1.02783 1.20777 0.89946 0.82146 0.84053 1.90481 1.52951 1.56600 1.50195 1.41947 1.19581 1.06918 1.53035 1.19633 0.97755 0.92660 1.36046 0.90488 1.26014 1.02405 0.95466 0.97471 1.69668 1.37649 1.04335 1.44538 0.84947 0.77481 0.77721 0.78311 1.19661 1.19547 1.19901 1.24325 0.96446 0.97506 0.95159 0.92583 0.90088 0.90212 0.90014 0.90425 0.90121 0.89792 0.88699 0.90844 0.87856 0.89947 0.85648 0.89634 0.87415 0.87445 0.89430 0.77054 0.91372 0.88210 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.22 8.40 127.77 1.07 3.29 16 2 N -0.58 -15.40 3.11 -825.66 -2.57 -17.97 16 3 C 0.55 14.49 7.61 86.62 0.66 15.15 16 4 O -0.54 -15.59 13.66 -4.04 -0.06 -15.64 16 5 C -0.03 -0.80 7.09 23.50 0.17 -0.63 16 6 F -0.14 -3.21 13.48 44.97 0.61 -2.60 16 7 C -0.06 -1.12 6.16 -17.00 -0.10 -1.22 16 8 C -0.08 -1.34 4.82 30.52 0.15 -1.20 16 9 C -0.12 -1.22 6.88 31.71 0.22 -1.00 16 10 C -0.12 -1.03 6.94 31.91 0.22 -0.81 16 11 C -0.10 -1.22 6.44 30.85 0.20 -1.02 16 12 C 0.12 2.92 4.68 45.44 0.21 3.13 16 13 C -0.01 -0.12 7.31 83.57 0.61 0.49 16 14 N -0.47 -14.50 4.29 -932.61 -4.00 -18.50 16 15 C 0.02 0.69 5.30 85.56 0.45 1.14 16 16 C 0.44 21.06 7.85 87.66 0.69 21.74 16 17 O -0.62 -34.33 16.01 -3.05 -0.05 -34.37 16 18 N -0.58 -29.62 5.29 -306.97 -1.62 -31.24 16 19 C -0.33 -18.93 9.68 84.04 0.81 -18.11 16 20 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 21 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 22 N -0.92 -49.81 13.05 21.66 0.28 -49.53 16 23 Si 0.99 43.28 29.55 68.60 2.03 45.30 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 27 C 0.00 -0.13 6.72 83.57 0.56 0.43 16 28 H 0.06 1.56 8.08 -2.39 -0.02 1.54 16 29 H 0.08 2.08 5.97 -2.39 -0.01 2.06 16 30 H 0.08 2.64 5.51 -2.39 -0.01 2.63 16 31 H 0.08 1.55 7.55 -2.38 -0.02 1.53 16 32 H 0.08 1.45 7.82 -2.39 -0.02 1.43 16 33 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.13 2.83 7.26 -2.38 -0.02 2.81 16 40 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.11 1.92 7.91 -2.39 -0.02 1.91 16 42 H 0.11 3.17 8.08 -2.39 -0.02 3.15 16 43 H 0.09 2.45 7.30 -2.39 -0.02 2.44 16 44 H 0.40 19.21 7.90 -92.72 -0.73 18.48 16 45 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 46 H 0.10 2.35 7.42 -2.39 -0.02 2.33 16 47 H 0.07 2.27 7.36 -2.39 -0.02 2.25 16 Total: -1.00 -70.33 381.76 1.28 -69.05 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: 0.27 Total: 34.41 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: 6.39 Total: 21.09 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -7.91 Total: -117.24 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -0.10 Total: -50.02 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.61 Total: -2.60 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -70.33 1.28 -69.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671119867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.408 kcal (2) G-P(sol) polarization free energy of solvation -70.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds