Wall clock time and date at job start Tue Mar 31 2020 22:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 N 1.46496 * 109.46953 * 119.99646 * 2 1 3 5 5 C 1.36941 * 120.00426 * 275.00109 * 4 2 1 6 6 H 1.08001 * 119.99799 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00188 * 179.97438 * 5 4 2 8 8 N 1.31621 * 119.99833 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99939 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47253 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47172 * 120.00068 * 9 7 5 12 12 H 1.48500 * 109.47440 * 240.00473 * 9 7 5 13 13 C 1.52992 * 109.47482 * 240.00026 * 2 1 3 14 14 H 1.08998 * 109.46862 * 300.00565 * 13 2 1 15 15 C 1.52997 * 109.47482 * 179.97438 * 13 2 1 16 16 N 1.46506 * 109.46999 * 59.99650 * 13 2 1 17 17 C 1.34777 * 120.00033 * 205.00067 * 16 13 2 18 18 O 1.21287 * 119.99681 * 0.02562 * 17 16 13 19 19 C 1.50696 * 120.00198 * 180.02562 * 17 16 13 20 20 C 1.50700 * 109.47251 * 180.02562 * 19 17 16 21 21 C 1.33637 * 122.75298 * 85.02929 * 20 19 17 22 22 S 1.76188 * 107.92594 * 180.02562 * 21 20 19 23 23 C 1.70971 * 90.28470 * 359.97438 * 22 21 20 24 24 C 1.50702 * 124.91542 * 180.02562 * 23 22 21 25 25 C 1.53002 * 109.46893 * 239.97337 * 24 23 22 26 26 C 1.53000 * 109.47473 * 359.97259 * 24 23 22 27 27 C 1.53003 * 109.47186 * 119.97838 * 24 23 22 28 28 N 1.29026 * 110.16719 * 359.73644 * 23 22 21 29 29 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 31 31 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 32 32 H 0.97002 * 120.00183 * 95.00754 * 4 2 1 33 33 H 0.97000 * 119.99490 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47153 * 59.99783 * 15 13 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 15 13 2 36 36 H 1.09004 * 109.47261 * 179.97438 * 15 13 2 37 37 H 0.96992 * 120.00062 * 25.00521 * 16 13 2 38 38 H 1.08997 * 109.47364 * 300.00354 * 19 17 16 39 39 H 1.09001 * 109.46822 * 60.00123 * 19 17 16 40 40 H 1.08005 * 126.03213 * 359.97438 * 21 20 19 41 41 H 1.08997 * 109.47005 * 60.00234 * 25 24 23 42 42 H 1.08999 * 109.46800 * 180.02562 * 25 24 23 43 43 H 1.09001 * 109.47398 * 300.00217 * 25 24 23 44 44 H 1.09007 * 109.46341 * 60.00102 * 26 24 23 45 45 H 1.08999 * 109.47257 * 179.97438 * 26 24 23 46 46 H 1.08999 * 109.47115 * 300.00806 * 26 24 23 47 47 H 1.09001 * 109.47183 * 59.99734 * 27 24 23 48 48 H 1.09000 * 109.47143 * 180.02562 * 27 24 23 49 49 H 1.09004 * 109.46899 * 299.99442 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1490 -0.0074 2.3758 6 1 1.8926 1.0406 2.4242 7 6 2.6112 -0.6619 3.5094 8 7 2.9242 -1.9390 3.4503 9 14 2.7902 0.2702 5.1182 10 1 2.3763 1.6826 4.9208 11 1 1.9291 -0.3575 6.1524 12 1 4.2071 0.2264 5.5607 13 6 2.0400 -0.7212 -1.2492 14 1 1.6766 -1.7488 -1.2492 15 6 3.5700 -0.7206 -1.2495 16 7 1.5516 -0.0306 -2.4454 17 6 1.4230 -0.7030 -3.6063 18 8 1.7111 -1.8799 -3.6606 19 6 0.9212 0.0075 -4.8369 20 6 0.8698 -0.9610 -5.9904 21 6 -0.1734 -1.7662 -6.2125 22 16 0.1776 -2.7247 -7.6485 23 6 1.6918 -1.9471 -7.8080 24 6 2.6963 -2.2296 -8.8954 25 6 4.0065 -2.7090 -8.2674 26 6 2.1496 -3.3144 -9.8255 27 6 2.9527 -0.9519 -9.6972 28 7 1.8476 -1.0792 -6.8661 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2491 -1.6317 1.1527 33 1 3.2475 -2.3962 4.2423 34 1 3.9337 -1.2342 -0.3595 35 1 3.9329 0.3072 -1.2497 36 1 3.9334 -1.2349 -2.1393 37 1 1.3210 0.9105 -2.4018 38 1 -0.0779 0.4001 -4.6479 39 1 1.5941 0.8293 -5.0818 40 1 -1.0724 -1.8203 -5.6164 41 1 3.8239 -3.6192 -7.6961 42 1 4.7331 -2.9128 -9.0539 43 1 4.3960 -1.9362 -7.6047 44 1 1.2161 -2.9727 -10.2729 45 1 2.8759 -3.5183 -10.6123 46 1 1.9669 -4.2245 -9.2542 47 1 3.3422 -0.1791 -9.0346 48 1 3.6788 -1.1563 -10.4840 49 1 2.0192 -0.6103 -10.1447 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674740454.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:50 Heat of formation + Delta-G solvation = -1.935190 kcal Electronic energy + Delta-G solvation = -27079.383866 eV Core-core repulsion = 23360.976130 eV Total energy + Delta-G solvation = -3718.407736 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.48549 -39.33921 -37.17830 -36.55260 -33.89542 -32.19343 -31.44298 -29.58433 -28.43552 -27.90812 -27.78088 -27.55711 -25.17106 -23.99496 -22.86416 -20.89208 -20.12950 -19.71664 -19.46131 -17.70391 -17.39606 -16.99528 -16.03544 -15.51863 -15.08883 -14.92295 -14.67589 -14.43092 -14.11493 -14.03946 -13.61496 -13.54051 -13.33523 -13.20111 -13.04982 -12.69359 -12.48733 -12.44110 -12.31981 -12.01094 -11.82240 -11.75565 -11.61888 -11.45574 -11.35335 -11.25591 -11.15379 -10.95030 -10.84881 -10.68162 -10.18935 -9.88581 -9.81699 -9.72062 -9.62381 -9.46094 -9.01608 -8.83419 -8.72826 -6.99507 -5.78384 -3.07951 0.60848 1.23830 1.61650 2.58637 2.81601 3.41611 3.43605 3.48886 3.49889 3.75082 4.37615 4.54806 4.57303 4.58403 4.79305 4.96617 5.02218 5.13200 5.18456 5.25042 5.28468 5.34684 5.41111 5.49277 5.50825 5.57065 5.58142 5.62349 5.69296 5.72535 5.77360 5.90414 5.91653 5.99870 6.08966 6.11380 6.25022 6.40425 6.43427 6.53749 6.64390 6.82504 6.97072 7.03178 7.64296 7.68075 7.72554 8.38700 8.43470 9.50599 10.06254 10.41146 11.44042 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025709 B = 0.002023 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.870281 B =13838.481981 C =14190.640248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.169 3.831 3 H 0.050 0.950 4 N -0.718 5.718 5 C -0.237 4.237 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.930 5.930 9 Si 0.907 3.093 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C 0.137 3.863 14 H 0.083 0.917 15 C -0.152 4.152 16 N -0.718 5.718 17 C 0.516 3.484 18 O -0.534 6.534 19 C -0.069 4.069 20 C 0.092 3.908 21 C -0.249 4.249 22 S 0.117 5.883 23 C 0.062 3.938 24 C 0.011 3.989 25 C -0.135 4.135 26 C -0.154 4.154 27 C -0.133 4.133 28 N -0.460 5.460 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.385 0.615 33 H 0.255 0.745 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.397 0.603 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.174 0.826 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.067 0.933 48 H 0.064 0.936 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.673 2.200 -29.268 29.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.058 3.942 3 H 0.068 0.932 4 N -0.360 5.360 5 C -0.369 4.369 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.578 5.578 9 Si 0.738 3.262 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C 0.033 3.967 14 H 0.101 0.899 15 C -0.210 4.210 16 N -0.369 5.369 17 C 0.300 3.700 18 O -0.410 6.410 19 C -0.112 4.112 20 C -0.040 4.040 21 C -0.388 4.388 22 S 0.374 5.626 23 C -0.217 4.217 24 C 0.007 3.993 25 C -0.193 4.193 26 C -0.212 4.212 27 C -0.192 4.192 28 N -0.173 5.173 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.219 0.781 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.231 0.769 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.192 0.808 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.525 0.986 -29.678 30.037 hybrid contribution -0.057 1.175 1.907 2.241 sum -4.581 2.161 -27.771 28.229 Atomic orbital electron populations 1.22443 0.99095 1.01048 0.99795 1.20390 0.92076 0.95571 0.86159 0.93179 1.42306 1.78181 1.10704 1.04849 1.19234 1.36701 0.93860 0.87069 0.91101 1.24753 1.02106 0.95987 0.98083 1.69677 1.50714 1.08631 1.28819 0.86124 0.77304 0.78744 0.84031 1.20588 1.21922 1.21878 1.21315 0.94388 0.97506 0.83537 0.89850 1.22042 0.95011 1.01710 1.02259 1.46042 1.67226 1.13883 1.09749 1.20268 0.78150 0.87442 0.84115 1.90724 1.49541 1.15967 1.84771 1.20206 1.04265 0.97196 0.89544 1.19409 0.89211 0.99090 0.96247 1.26759 1.05731 1.03104 1.03165 1.83813 1.15041 1.40445 1.23327 1.26970 0.98379 0.96856 0.99499 1.19227 0.92555 0.96901 0.90606 1.21842 0.94657 1.01958 1.00889 1.22025 1.01658 0.97988 0.99488 1.21831 1.01806 0.96005 0.99515 1.65878 1.28881 1.19424 1.03139 0.93481 0.92681 0.94565 0.78066 0.93509 0.90206 0.93100 0.93526 0.76896 0.87338 0.87189 0.80832 0.92362 0.91696 0.91365 0.91886 0.90707 0.91767 0.91407 0.91681 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.33 37.16 0.35 -2.51 16 2 C 0.17 3.21 2.52 -67.94 -0.17 3.04 16 3 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 4 N -0.72 -17.50 4.43 -53.43 -0.24 -17.74 16 5 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 9 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 C 0.14 2.37 2.21 -67.93 -0.15 2.22 16 14 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 15 C -0.15 -2.72 9.33 37.16 0.35 -2.38 16 16 N -0.72 -9.74 4.38 -53.81 -0.24 -9.98 16 17 C 0.52 7.44 7.79 -10.99 -0.09 7.35 16 18 O -0.53 -10.11 15.70 5.55 0.09 -10.02 16 19 C -0.07 -0.74 6.11 -29.04 -0.18 -0.91 16 20 C 0.09 1.15 5.23 -84.22 -0.44 0.71 16 21 C -0.25 -2.80 11.14 29.12 0.32 -2.48 16 22 S 0.12 1.16 21.57 -107.50 -2.32 -1.16 16 23 C 0.06 0.68 5.78 -13.46 -0.08 0.60 16 24 C 0.01 0.09 0.99 -155.66 -0.15 -0.06 16 25 C -0.13 -1.18 8.45 37.16 0.31 -0.87 16 26 C -0.15 -0.96 7.54 37.16 0.28 -0.68 16 27 C -0.13 -0.96 8.45 37.16 0.31 -0.65 16 28 N -0.46 -5.98 10.51 -8.06 -0.08 -6.06 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.04 0.50 7.45 -51.93 -0.39 0.12 16 32 H 0.39 10.17 7.58 -40.82 -0.31 9.86 16 33 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.08 1.62 7.45 -51.93 -0.39 1.23 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.40 4.19 8.39 -40.82 -0.34 3.85 16 38 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.17 1.64 8.06 -52.48 -0.42 1.22 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.36 7.92 -51.93 -0.41 -0.05 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.42 7.92 -51.93 -0.41 0.01 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 49 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 413.23 15.07 6.23 6.23 Total: -1.00 -33.45 413.23 -8.96 -42.41 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -8.53 Total: 9.98 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 0.42 Total: -3.65 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: 0.17 Total: -60.95 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.32 Total: -1.16 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.45 -8.96 -42.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674740454.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.477 kcal (2) G-P(sol) polarization free energy of solvation -33.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds