Wall clock time and date at job start Tue Mar 31 2020 22:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 N 1.46496 * 109.46953 * 119.99646 * 2 1 3 5 5 C 1.36941 * 120.00426 * 275.00109 * 4 2 1 6 6 H 1.08001 * 119.99799 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00188 * 179.97438 * 5 4 2 8 8 N 1.31621 * 119.99833 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99939 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47253 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47172 * 120.00068 * 9 7 5 12 12 H 1.48500 * 109.47440 * 240.00473 * 9 7 5 13 13 C 1.52992 * 109.47482 * 240.00026 * 2 1 3 14 14 H 1.08998 * 109.46862 * 300.00565 * 13 2 1 15 15 C 1.52997 * 109.47482 * 179.97438 * 13 2 1 16 16 N 1.46506 * 109.46999 * 59.99650 * 13 2 1 17 17 C 1.34777 * 120.00033 * 205.00067 * 16 13 2 18 18 O 1.21287 * 119.99681 * 0.02562 * 17 16 13 19 19 C 1.50696 * 120.00198 * 180.02562 * 17 16 13 20 20 C 1.50700 * 109.47251 * 180.02562 * 19 17 16 21 21 C 1.33637 * 122.75298 * 85.02929 * 20 19 17 22 22 S 1.76188 * 107.92594 * 180.02562 * 21 20 19 23 23 C 1.70971 * 90.28470 * 359.97438 * 22 21 20 24 24 C 1.50702 * 124.91542 * 180.02562 * 23 22 21 25 25 C 1.53002 * 109.46893 * 239.97337 * 24 23 22 26 26 C 1.53000 * 109.47473 * 359.97259 * 24 23 22 27 27 C 1.53003 * 109.47186 * 119.97838 * 24 23 22 28 28 N 1.29026 * 110.16719 * 359.73644 * 23 22 21 29 29 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 31 31 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 32 32 H 0.97002 * 120.00183 * 95.00754 * 4 2 1 33 33 H 0.97000 * 119.99490 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47153 * 59.99783 * 15 13 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 15 13 2 36 36 H 1.09004 * 109.47261 * 179.97438 * 15 13 2 37 37 H 0.96992 * 120.00062 * 25.00521 * 16 13 2 38 38 H 1.08997 * 109.47364 * 300.00354 * 19 17 16 39 39 H 1.09001 * 109.46822 * 60.00123 * 19 17 16 40 40 H 1.08005 * 126.03213 * 359.97438 * 21 20 19 41 41 H 1.08997 * 109.47005 * 60.00234 * 25 24 23 42 42 H 1.08999 * 109.46800 * 180.02562 * 25 24 23 43 43 H 1.09001 * 109.47398 * 300.00217 * 25 24 23 44 44 H 1.09007 * 109.46341 * 60.00102 * 26 24 23 45 45 H 1.08999 * 109.47257 * 179.97438 * 26 24 23 46 46 H 1.08999 * 109.47115 * 300.00806 * 26 24 23 47 47 H 1.09001 * 109.47183 * 59.99734 * 27 24 23 48 48 H 1.09000 * 109.47143 * 180.02562 * 27 24 23 49 49 H 1.09004 * 109.46899 * 299.99442 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1490 -0.0074 2.3758 6 1 1.8926 1.0406 2.4242 7 6 2.6112 -0.6619 3.5094 8 7 2.9242 -1.9390 3.4503 9 14 2.7902 0.2702 5.1182 10 1 2.3763 1.6826 4.9208 11 1 1.9291 -0.3575 6.1524 12 1 4.2071 0.2264 5.5607 13 6 2.0400 -0.7212 -1.2492 14 1 1.6766 -1.7488 -1.2492 15 6 3.5700 -0.7206 -1.2495 16 7 1.5516 -0.0306 -2.4454 17 6 1.4230 -0.7030 -3.6063 18 8 1.7111 -1.8799 -3.6606 19 6 0.9212 0.0075 -4.8369 20 6 0.8698 -0.9610 -5.9904 21 6 -0.1734 -1.7662 -6.2125 22 16 0.1776 -2.7247 -7.6485 23 6 1.6918 -1.9471 -7.8080 24 6 2.6963 -2.2296 -8.8954 25 6 4.0065 -2.7090 -8.2674 26 6 2.1496 -3.3144 -9.8255 27 6 2.9527 -0.9519 -9.6972 28 7 1.8476 -1.0792 -6.8661 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2491 -1.6317 1.1527 33 1 3.2475 -2.3962 4.2423 34 1 3.9337 -1.2342 -0.3595 35 1 3.9329 0.3072 -1.2497 36 1 3.9334 -1.2349 -2.1393 37 1 1.3210 0.9105 -2.4018 38 1 -0.0779 0.4001 -4.6479 39 1 1.5941 0.8293 -5.0818 40 1 -1.0724 -1.8203 -5.6164 41 1 3.8239 -3.6192 -7.6961 42 1 4.7331 -2.9128 -9.0539 43 1 4.3960 -1.9362 -7.6047 44 1 1.2161 -2.9727 -10.2729 45 1 2.8759 -3.5183 -10.6123 46 1 1.9669 -4.2245 -9.2542 47 1 3.3422 -0.1791 -9.0346 48 1 3.6788 -1.1563 -10.4840 49 1 2.0192 -0.6103 -10.1447 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674740454.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:49 Heat of formation + Delta-G solvation = -23.823037 kcal Electronic energy + Delta-G solvation = -27080.332994 eV Core-core repulsion = 23360.976130 eV Total energy + Delta-G solvation = -3719.356864 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.43094 -40.44967 -38.32116 -37.62009 -35.57082 -33.66613 -32.70675 -30.97678 -30.14317 -28.88045 -28.32751 -28.18364 -25.99717 -25.91305 -24.34175 -22.01607 -21.54069 -20.73022 -20.25099 -19.36648 -18.45298 -18.19188 -17.13381 -16.67263 -16.48042 -16.08471 -15.82517 -15.39386 -15.32489 -15.09265 -14.87534 -14.80179 -14.71311 -14.24869 -14.11150 -14.03954 -13.59412 -13.34427 -13.15890 -13.07911 -12.96658 -12.91243 -12.75335 -12.62353 -12.58858 -12.41625 -12.26651 -12.20265 -12.09568 -11.97529 -11.88936 -11.73262 -11.46327 -11.00838 -10.93653 -10.53869 -10.27955 -10.07609 -9.65730 -9.01427 -7.92242 -5.21218 -0.20990 0.46289 0.80663 1.48625 1.49021 1.58835 1.67071 1.68844 2.33180 2.60528 3.01845 3.42091 3.65907 3.76587 3.89067 3.95317 3.97131 4.05261 4.16119 4.22095 4.28248 4.35639 4.39552 4.52007 4.59143 4.66885 4.73429 4.78439 4.81348 4.83169 4.88154 4.94812 4.95888 4.96739 5.00353 5.05658 5.12268 5.19766 5.27315 5.29628 5.34712 5.41149 5.51480 5.52760 5.61149 6.28734 6.62455 6.82605 7.32354 7.34829 8.08557 8.31509 9.31536 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025709 B = 0.002023 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.870281 B =13838.481981 C =14190.640248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.168 3.832 3 H 0.063 0.937 4 N -0.732 5.732 5 C -0.229 4.229 6 H 0.082 0.918 7 C -0.080 4.080 8 N -0.971 5.971 9 Si 0.971 3.029 10 H -0.262 1.262 11 H -0.298 1.298 12 H -0.297 1.297 13 C 0.153 3.847 14 H 0.055 0.945 15 C -0.142 4.142 16 N -0.703 5.703 17 C 0.516 3.484 18 O -0.583 6.583 19 C -0.059 4.059 20 C 0.069 3.931 21 C -0.263 4.263 22 S 0.146 5.854 23 C 0.049 3.951 24 C 0.007 3.993 25 C -0.132 4.132 26 C -0.151 4.151 27 C -0.128 4.128 28 N -0.489 5.489 29 H 0.030 0.970 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.370 0.630 33 H 0.249 0.751 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.041 0.959 37 H 0.417 0.583 38 H 0.146 0.854 39 H 0.127 0.873 40 H 0.189 0.811 41 H 0.043 0.957 42 H 0.088 0.912 43 H 0.045 0.955 44 H 0.069 0.931 45 H 0.095 0.905 46 H 0.058 0.942 47 H 0.050 0.950 48 H 0.085 0.915 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.744 4.167 -31.265 32.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.059 3.941 3 H 0.081 0.919 4 N -0.372 5.372 5 C -0.361 4.361 6 H 0.100 0.900 7 C -0.272 4.272 8 N -0.622 5.622 9 Si 0.801 3.199 10 H -0.186 1.186 11 H -0.226 1.226 12 H -0.224 1.224 13 C 0.047 3.953 14 H 0.073 0.927 15 C -0.201 4.201 16 N -0.356 5.356 17 C 0.303 3.697 18 O -0.463 6.463 19 C -0.102 4.102 20 C -0.063 4.063 21 C -0.402 4.402 22 S 0.403 5.597 23 C -0.229 4.229 24 C 0.003 3.997 25 C -0.191 4.191 26 C -0.209 4.209 27 C -0.186 4.186 28 N -0.203 5.203 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.202 0.798 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.254 0.746 38 H 0.164 0.836 39 H 0.145 0.855 40 H 0.206 0.794 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.064 0.936 44 H 0.088 0.912 45 H 0.113 0.887 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.104 0.896 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.635 3.035 -31.720 32.359 hybrid contribution 0.261 0.546 2.402 2.477 sum -5.374 3.581 -29.318 30.021 Atomic orbital electron populations 1.22293 0.97283 1.00491 1.01277 1.20577 0.93115 0.95585 0.84836 0.91938 1.42508 1.78463 1.10216 1.06019 1.19637 1.34410 0.94259 0.87801 0.90028 1.25561 1.03237 0.96857 1.01519 1.69844 1.52831 1.10330 1.29239 0.85093 0.76545 0.78350 0.79897 1.18631 1.22551 1.22449 1.20836 0.93732 0.96256 0.84477 0.92668 1.21917 0.95600 1.02035 1.00526 1.45791 1.66747 1.14644 1.08420 1.20965 0.76914 0.86897 0.84940 1.90712 1.51623 1.18402 1.85527 1.20254 1.06508 0.96652 0.86735 1.19742 0.89551 1.00095 0.96922 1.27089 1.06189 1.03069 1.03892 1.83632 1.14080 1.39548 1.22416 1.27522 0.99340 0.96428 0.99647 1.19410 0.91719 0.98153 0.90416 1.21818 0.95636 1.00461 1.01149 1.22030 1.02524 0.96882 0.99445 1.21792 1.02498 0.94866 0.99465 1.65919 1.29625 1.20704 1.04044 0.95075 0.93827 0.90366 0.79787 0.94244 0.93181 0.91630 0.93974 0.74574 0.83609 0.85507 0.79412 0.93732 0.89275 0.93607 0.91177 0.88661 0.92285 0.93128 0.89593 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.07 9.33 71.98 0.67 -4.40 16 2 C 0.17 6.20 2.52 44.99 0.11 6.31 16 3 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 4 N -0.73 -35.95 4.43 -322.96 -1.43 -37.38 16 5 C -0.23 -12.32 9.93 84.03 0.83 -11.49 16 6 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 7 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 8 N -0.97 -59.84 13.06 21.65 0.28 -59.56 16 9 Si 0.97 45.88 29.55 68.60 2.03 47.91 16 10 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 12 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 13 C 0.15 5.24 2.21 44.99 0.10 5.34 16 14 H 0.06 2.24 7.58 -2.39 -0.02 2.22 16 15 C -0.14 -5.15 9.33 71.98 0.67 -4.48 16 16 N -0.70 -17.70 4.38 -442.54 -1.94 -19.64 16 17 C 0.52 14.19 7.79 87.66 0.68 14.87 16 18 O -0.58 -22.23 15.70 -3.05 -0.05 -22.27 16 19 C -0.06 -1.12 6.11 29.10 0.18 -0.94 16 20 C 0.07 1.63 5.23 41.52 0.22 1.85 16 21 C -0.26 -5.62 11.14 66.78 0.74 -4.88 16 22 S 0.15 2.73 21.57 -56.49 -1.22 1.51 16 23 C 0.05 1.04 5.78 88.52 0.51 1.56 16 24 C 0.01 0.11 0.99 -52.93 -0.05 0.06 16 25 C -0.13 -2.27 8.45 71.98 0.61 -1.66 16 26 C -0.15 -1.60 7.54 71.98 0.54 -1.06 16 27 C -0.13 -1.66 8.45 71.98 0.61 -1.05 16 28 N -0.49 -12.48 10.51 -179.40 -1.89 -14.36 16 29 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.08 1.91 7.45 -2.39 -0.02 1.89 16 32 H 0.37 20.24 7.58 -92.71 -0.70 19.54 16 33 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 34 H 0.05 2.10 7.45 -2.39 -0.02 2.09 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.42 7.33 8.39 -92.71 -0.78 6.55 16 38 H 0.15 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.13 1.98 8.14 -2.39 -0.02 1.97 16 40 H 0.19 3.24 8.06 -2.91 -0.02 3.21 16 41 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.07 0.65 7.92 -2.38 -0.02 0.63 16 45 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.06 0.69 7.92 -2.39 -0.02 0.67 16 47 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -74.94 413.23 2.14 -72.80 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: -0.54 Total: 35.04 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 6.90 Total: -4.05 kcal Atomic # 7 Polarization: -125.97 SS G_CDS: -4.97 Total: -130.94 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.05 Total: -22.27 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.22 Total: 1.51 kcal Total: -74.94 2.14 -72.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674740454.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.975 kcal (2) G-P(sol) polarization free energy of solvation -74.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds