Wall clock time and date at job start Tue Mar 31 2020 22:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46908 * 2 1 4 4 N 1.46499 * 109.47042 * 120.00120 * 2 1 3 5 5 C 1.34774 * 119.99473 * 274.99639 * 4 2 1 6 6 O 1.21279 * 120.00716 * 0.02562 * 5 4 2 7 7 C 1.50708 * 119.99715 * 180.02562 * 5 4 2 8 8 C 1.50699 * 109.46937 * 179.97438 * 7 5 4 9 9 C 1.33648 * 122.74712 * 85.02710 * 8 7 5 10 10 S 1.76196 * 107.92144 * 179.97438 * 9 8 7 11 11 C 1.70981 * 90.28621 * 359.97438 * 10 9 8 12 12 C 1.50697 * 124.91788 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47347 * 239.98071 * 12 11 10 14 14 C 1.53006 * 109.47005 * 359.97438 * 12 11 10 15 15 C 1.52998 * 109.46755 * 119.97823 * 12 11 10 16 16 N 1.29026 * 110.16359 * 359.73656 * 11 10 9 17 17 C 1.53004 * 109.46906 * 239.99777 * 2 1 3 18 18 H 1.09002 * 109.47194 * 300.00164 * 17 2 1 19 19 C 1.52995 * 109.46864 * 179.97438 * 17 2 1 20 20 N 1.46499 * 109.46824 * 59.99935 * 17 2 1 21 21 C 1.36935 * 119.99926 * 204.99960 * 20 17 2 22 22 H 1.08005 * 119.99877 * 359.97438 * 21 20 17 23 23 C 1.38811 * 120.00369 * 179.73019 * 21 20 17 24 24 N 1.31614 * 120.00468 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99699 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47209 * 90.00536 * 25 23 21 27 27 H 1.48506 * 109.47294 * 210.00384 * 25 23 21 28 28 H 1.48501 * 109.47275 * 330.00287 * 25 23 21 29 29 H 1.09001 * 109.46902 * 299.99810 * 1 2 3 30 30 H 1.08998 * 109.46903 * 60.00198 * 1 2 3 31 31 H 1.08997 * 109.46908 * 179.97438 * 1 2 3 32 32 H 0.96996 * 119.99958 * 94.99865 * 4 2 1 33 33 H 1.09000 * 109.46827 * 300.00154 * 7 5 4 34 34 H 1.09002 * 109.46986 * 60.00156 * 7 5 4 35 35 H 1.07997 * 126.03791 * 359.97438 * 9 8 7 36 36 H 1.09004 * 109.47177 * 60.00008 * 13 12 11 37 37 H 1.09002 * 109.46860 * 180.02562 * 13 12 11 38 38 H 1.08999 * 109.47196 * 300.00269 * 13 12 11 39 39 H 1.08992 * 109.47478 * 59.99538 * 14 12 11 40 40 H 1.08995 * 109.46833 * 179.97438 * 14 12 11 41 41 H 1.09004 * 109.46790 * 299.99545 * 14 12 11 42 42 H 1.08999 * 109.46846 * 60.00308 * 15 12 11 43 43 H 1.09003 * 109.47269 * 179.97438 * 15 12 11 44 44 H 1.08999 * 109.47677 * 300.00292 * 15 12 11 45 45 H 1.09002 * 109.47544 * 300.00188 * 19 17 2 46 46 H 1.09007 * 109.47281 * 60.00379 * 19 17 2 47 47 H 1.09003 * 109.47025 * 179.97438 * 19 17 2 48 48 H 0.97005 * 120.00261 * 25.00085 * 20 17 2 49 49 H 0.97000 * 120.00663 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0182 2.3570 6 8 1.8583 1.1584 2.4117 7 6 2.6500 -0.7285 3.5874 8 6 2.7012 0.2401 4.7409 9 6 1.6408 0.5052 5.5099 10 16 2.1341 1.6793 6.7275 11 6 3.7172 1.6965 6.0819 12 6 4.8560 2.5290 6.6122 13 6 5.3526 3.4721 5.5146 14 6 4.3732 3.3498 7.8098 15 6 5.9982 1.6103 7.0505 16 7 3.7970 0.8897 5.0782 17 6 2.0400 -0.7213 -1.2493 18 1 1.6767 -1.7490 -1.2492 19 6 3.5700 -0.7208 -1.2496 20 7 1.5516 -0.0307 -2.4454 21 6 1.4208 -0.7138 -3.6249 22 1 1.6780 -1.7617 -3.6735 23 6 0.9527 -0.0610 -4.7570 24 7 0.8264 -0.7176 -5.8905 25 14 0.5006 1.7495 -4.6710 26 1 1.6935 2.5734 -4.9927 27 1 -0.5784 2.0373 -5.6500 28 1 0.0272 2.0771 -3.3022 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 2.2490 -1.6318 1.1526 33 1 1.9778 -1.5508 3.8325 34 1 3.6493 -1.1203 3.3978 35 1 0.6557 0.0756 5.4038 36 1 4.5388 4.1266 5.2022 37 1 6.1766 4.0739 5.8980 38 1 5.6964 2.8875 4.6613 39 1 4.0193 2.6781 8.5917 40 1 5.1970 3.9516 8.1935 41 1 3.5595 4.0043 7.4973 42 1 6.3421 1.0257 6.1973 43 1 6.8222 2.2124 7.4337 44 1 5.6445 0.9384 7.8325 45 1 3.9330 0.3070 -1.2498 46 1 3.9337 -1.2344 -0.3596 47 1 3.9333 -1.2350 -2.1393 48 1 1.3209 0.9105 -2.4019 49 1 0.4990 -0.2615 -6.6815 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674740457.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:56 Heat of formation + Delta-G solvation = 2.165166 kcal Electronic energy + Delta-G solvation = -27190.854427 eV Core-core repulsion = 23472.624495 eV Total energy + Delta-G solvation = -3718.229931 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.54554 -39.43131 -37.25306 -36.69181 -34.01591 -32.24104 -31.54887 -29.81775 -28.89418 -28.02049 -27.81387 -27.58558 -25.22523 -23.90103 -22.77435 -20.87860 -20.27879 -19.79618 -19.50828 -17.98450 -17.63550 -17.02831 -16.05720 -15.76516 -15.10185 -14.99440 -14.63499 -14.46809 -14.20917 -14.10170 -13.87731 -13.59849 -13.40441 -13.27784 -12.92149 -12.74633 -12.53417 -12.49436 -12.41517 -12.06704 -12.03918 -11.85678 -11.78846 -11.47336 -11.38599 -11.36209 -11.28296 -11.09384 -10.91389 -10.77298 -10.30424 -9.94912 -9.82527 -9.75851 -9.60253 -9.50947 -9.06213 -8.88825 -8.81850 -7.31270 -5.79305 -3.15547 0.55919 1.19012 1.56818 2.53239 2.72768 3.35402 3.37725 3.41852 3.46143 3.70340 4.33694 4.51655 4.53494 4.57800 4.73401 4.91331 4.94760 5.07706 5.15525 5.18962 5.20043 5.25381 5.38473 5.39327 5.42494 5.47648 5.52856 5.55194 5.58780 5.63931 5.69523 5.71935 5.87316 5.96515 6.00747 6.05106 6.09821 6.26345 6.29584 6.39633 6.52628 6.67600 6.82105 6.93946 7.59565 7.62958 7.94985 8.33348 8.39219 9.16701 9.89432 10.08467 11.38687 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020437 B = 0.002202 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.704818 B =12713.019481 C =12905.105377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.134 3.866 3 H 0.082 0.918 4 N -0.717 5.717 5 C 0.517 3.483 6 O -0.535 6.535 7 C -0.069 4.069 8 C 0.093 3.907 9 C -0.249 4.249 10 S 0.117 5.883 11 C 0.063 3.937 12 C 0.011 3.989 13 C -0.135 4.135 14 C -0.154 4.154 15 C -0.133 4.133 16 N -0.460 5.460 17 C 0.174 3.826 18 H 0.059 0.941 19 C -0.164 4.164 20 N -0.743 5.743 21 C -0.242 4.242 22 H 0.091 0.909 23 C 0.006 3.994 24 N -0.933 5.933 25 Si 0.882 3.118 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.276 1.276 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.399 0.601 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.174 0.826 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.045 0.955 46 H 0.039 0.961 47 H 0.059 0.941 48 H 0.362 0.638 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.711 2.559 31.558 32.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.029 3.971 3 H 0.100 0.900 4 N -0.368 5.368 5 C 0.301 3.699 6 O -0.411 6.411 7 C -0.112 4.112 8 C -0.039 4.039 9 C -0.388 4.388 10 S 0.374 5.626 11 C -0.216 4.216 12 C 0.007 3.993 13 C -0.194 4.194 14 C -0.212 4.212 15 C -0.192 4.192 16 N -0.173 5.173 17 C 0.064 3.936 18 H 0.077 0.923 19 C -0.224 4.224 20 N -0.386 5.386 21 C -0.372 4.372 22 H 0.109 0.891 23 C -0.190 4.190 24 N -0.580 5.580 25 Si 0.712 3.288 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.202 1.202 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.233 0.767 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.191 0.809 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.078 0.922 48 H 0.195 0.805 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.445 3.681 31.953 32.804 hybrid contribution -0.426 0.194 -1.000 1.104 sum 6.018 3.875 30.953 31.770 Atomic orbital electron populations 1.22063 0.95055 1.02068 1.02013 1.21330 0.94335 0.97548 0.83900 0.89954 1.45994 1.67256 1.13988 1.09612 1.20286 0.77885 0.87427 0.84252 1.90717 1.49609 1.15898 1.84871 1.20206 1.04736 0.96461 0.89810 1.19408 0.87773 0.99168 0.97592 1.26754 1.04371 1.05969 1.01750 1.83824 1.07187 1.39571 1.32058 1.26983 0.98083 1.00128 0.96414 1.19229 0.90837 0.93613 0.95617 1.21844 1.01130 0.98521 0.97865 1.22025 1.02182 1.00143 0.96812 1.21832 0.96513 0.98986 1.01851 1.65879 1.29615 1.08016 1.13797 1.20360 0.92317 0.95830 0.85107 0.92273 1.22410 0.98481 1.01147 1.00395 1.42658 1.79787 1.09462 1.06708 1.19011 1.37106 0.95640 0.85407 0.89134 1.24647 1.01275 0.97472 0.95572 1.69690 1.52396 1.35610 1.00326 0.86598 0.78233 0.86832 0.77158 1.21059 1.21727 1.20197 0.93327 0.90782 0.92601 0.76670 0.87272 0.87065 0.80869 0.92401 0.91663 0.91341 0.91875 0.90682 0.91795 0.91385 0.91651 0.92574 0.93552 0.94188 0.92153 0.80488 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.33 37.16 0.35 -2.17 16 2 C 0.13 2.18 2.21 -67.93 -0.15 2.03 16 3 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 4 N -0.72 -9.16 4.38 -53.80 -0.24 -9.39 16 5 C 0.52 7.07 7.79 -10.98 -0.09 6.98 16 6 O -0.53 -9.67 15.70 5.56 0.09 -9.58 16 7 C -0.07 -0.70 6.11 -29.03 -0.18 -0.87 16 8 C 0.09 1.11 5.23 -84.22 -0.44 0.67 16 9 C -0.25 -2.67 11.14 29.12 0.32 -2.35 16 10 S 0.12 1.10 21.57 -107.50 -2.32 -1.21 16 11 C 0.06 0.67 5.78 -13.46 -0.08 0.59 16 12 C 0.01 0.09 0.99 -155.66 -0.15 -0.07 16 13 C -0.13 -1.16 8.45 37.16 0.31 -0.84 16 14 C -0.15 -0.93 7.54 37.16 0.28 -0.65 16 15 C -0.13 -0.94 8.45 37.16 0.31 -0.63 16 16 N -0.46 -5.81 10.51 -8.05 -0.08 -5.90 16 17 C 0.17 3.18 2.52 -67.93 -0.17 3.00 16 18 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 19 C -0.16 -2.80 9.33 37.15 0.35 -2.46 16 20 N -0.74 -17.05 4.23 -53.43 -0.23 -17.28 16 21 C -0.24 -6.63 10.41 -15.06 -0.16 -6.78 16 22 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 23 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 24 N -0.93 -28.97 13.97 55.49 0.78 -28.19 16 25 Si 0.88 22.13 27.73 -169.99 -4.71 17.42 16 26 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 28 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.36 7.44 -51.93 -0.39 0.97 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.40 3.93 8.39 -40.82 -0.34 3.59 16 33 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.35 7.92 -51.93 -0.41 -0.07 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 0.40 7.92 -51.93 -0.41 -0.01 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.04 0.55 7.45 -51.93 -0.39 0.17 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.36 8.39 5.45 -40.82 -0.22 8.16 16 49 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 410.12 15.07 6.18 6.18 Total: -1.00 -34.34 410.12 -8.60 -42.94 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -8.48 Total: 8.48 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 0.42 Total: -3.46 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: 0.23 Total: -60.76 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.42 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.32 Total: -1.21 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.34 -8.60 -42.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674740457.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.105 kcal (2) G-P(sol) polarization free energy of solvation -34.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds