Wall clock time and date at job start Tue Mar 31 2020 22:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46908 * 2 1 4 4 N 1.46499 * 109.47042 * 120.00120 * 2 1 3 5 5 C 1.34774 * 119.99473 * 274.99639 * 4 2 1 6 6 O 1.21279 * 120.00716 * 0.02562 * 5 4 2 7 7 C 1.50708 * 119.99715 * 180.02562 * 5 4 2 8 8 C 1.50699 * 109.46937 * 179.97438 * 7 5 4 9 9 C 1.33648 * 122.74712 * 85.02710 * 8 7 5 10 10 S 1.76196 * 107.92144 * 179.97438 * 9 8 7 11 11 C 1.70981 * 90.28621 * 359.97438 * 10 9 8 12 12 C 1.50697 * 124.91788 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47347 * 239.98071 * 12 11 10 14 14 C 1.53006 * 109.47005 * 359.97438 * 12 11 10 15 15 C 1.52998 * 109.46755 * 119.97823 * 12 11 10 16 16 N 1.29026 * 110.16359 * 359.73656 * 11 10 9 17 17 C 1.53004 * 109.46906 * 239.99777 * 2 1 3 18 18 H 1.09002 * 109.47194 * 300.00164 * 17 2 1 19 19 C 1.52995 * 109.46864 * 179.97438 * 17 2 1 20 20 N 1.46499 * 109.46824 * 59.99935 * 17 2 1 21 21 C 1.36935 * 119.99926 * 204.99960 * 20 17 2 22 22 H 1.08005 * 119.99877 * 359.97438 * 21 20 17 23 23 C 1.38811 * 120.00369 * 179.73019 * 21 20 17 24 24 N 1.31614 * 120.00468 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99699 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47209 * 90.00536 * 25 23 21 27 27 H 1.48506 * 109.47294 * 210.00384 * 25 23 21 28 28 H 1.48501 * 109.47275 * 330.00287 * 25 23 21 29 29 H 1.09001 * 109.46902 * 299.99810 * 1 2 3 30 30 H 1.08998 * 109.46903 * 60.00198 * 1 2 3 31 31 H 1.08997 * 109.46908 * 179.97438 * 1 2 3 32 32 H 0.96996 * 119.99958 * 94.99865 * 4 2 1 33 33 H 1.09000 * 109.46827 * 300.00154 * 7 5 4 34 34 H 1.09002 * 109.46986 * 60.00156 * 7 5 4 35 35 H 1.07997 * 126.03791 * 359.97438 * 9 8 7 36 36 H 1.09004 * 109.47177 * 60.00008 * 13 12 11 37 37 H 1.09002 * 109.46860 * 180.02562 * 13 12 11 38 38 H 1.08999 * 109.47196 * 300.00269 * 13 12 11 39 39 H 1.08992 * 109.47478 * 59.99538 * 14 12 11 40 40 H 1.08995 * 109.46833 * 179.97438 * 14 12 11 41 41 H 1.09004 * 109.46790 * 299.99545 * 14 12 11 42 42 H 1.08999 * 109.46846 * 60.00308 * 15 12 11 43 43 H 1.09003 * 109.47269 * 179.97438 * 15 12 11 44 44 H 1.08999 * 109.47677 * 300.00292 * 15 12 11 45 45 H 1.09002 * 109.47544 * 300.00188 * 19 17 2 46 46 H 1.09007 * 109.47281 * 60.00379 * 19 17 2 47 47 H 1.09003 * 109.47025 * 179.97438 * 19 17 2 48 48 H 0.97005 * 120.00261 * 25.00085 * 20 17 2 49 49 H 0.97000 * 120.00663 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0182 2.3570 6 8 1.8583 1.1584 2.4117 7 6 2.6500 -0.7285 3.5874 8 6 2.7012 0.2401 4.7409 9 6 1.6408 0.5052 5.5099 10 16 2.1341 1.6793 6.7275 11 6 3.7172 1.6965 6.0819 12 6 4.8560 2.5290 6.6122 13 6 5.3526 3.4721 5.5146 14 6 4.3732 3.3498 7.8098 15 6 5.9982 1.6103 7.0505 16 7 3.7970 0.8897 5.0782 17 6 2.0400 -0.7213 -1.2493 18 1 1.6767 -1.7490 -1.2492 19 6 3.5700 -0.7208 -1.2496 20 7 1.5516 -0.0307 -2.4454 21 6 1.4208 -0.7138 -3.6249 22 1 1.6780 -1.7617 -3.6735 23 6 0.9527 -0.0610 -4.7570 24 7 0.8264 -0.7176 -5.8905 25 14 0.5006 1.7495 -4.6710 26 1 1.6935 2.5734 -4.9927 27 1 -0.5784 2.0373 -5.6500 28 1 0.0272 2.0771 -3.3022 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 2.2490 -1.6318 1.1526 33 1 1.9778 -1.5508 3.8325 34 1 3.6493 -1.1203 3.3978 35 1 0.6557 0.0756 5.4038 36 1 4.5388 4.1266 5.2022 37 1 6.1766 4.0739 5.8980 38 1 5.6964 2.8875 4.6613 39 1 4.0193 2.6781 8.5917 40 1 5.1970 3.9516 8.1935 41 1 3.5595 4.0043 7.4973 42 1 6.3421 1.0257 6.1973 43 1 6.8222 2.2124 7.4337 44 1 5.6445 0.9384 7.8325 45 1 3.9330 0.3070 -1.2498 46 1 3.9337 -1.2344 -0.3596 47 1 3.9333 -1.2350 -2.1393 48 1 1.3209 0.9105 -2.4019 49 1 0.4990 -0.2615 -6.6815 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674740457.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:56 Heat of formation + Delta-G solvation = -20.744161 kcal Electronic energy + Delta-G solvation = -27191.847850 eV Core-core repulsion = 23472.624495 eV Total energy + Delta-G solvation = -3719.223354 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.44125 -40.47239 -38.43079 -37.64135 -35.63455 -33.78375 -32.80979 -31.17771 -30.50468 -28.89374 -28.33381 -28.19086 -25.99928 -25.71922 -24.24037 -21.99153 -21.66543 -20.77689 -20.25291 -19.82810 -18.47793 -18.18307 -17.19231 -16.73067 -16.43153 -16.05756 -15.91260 -15.68736 -15.19327 -15.08256 -14.94251 -14.80673 -14.65690 -14.25512 -14.23396 -14.07052 -13.87518 -13.38490 -13.25293 -13.10357 -13.08394 -12.94429 -12.77997 -12.63200 -12.62947 -12.42544 -12.34405 -12.21355 -12.07884 -11.98129 -11.89420 -11.81387 -11.47972 -11.05638 -10.95661 -10.53819 -10.28284 -10.10376 -9.66059 -9.33183 -8.01856 -5.34743 -0.21335 0.45920 0.80402 1.37707 1.38681 1.45423 1.65918 1.68105 2.32418 2.47507 3.01388 3.30399 3.64869 3.66827 3.71838 3.89039 3.94908 3.98900 4.15199 4.18018 4.27386 4.30266 4.38981 4.52122 4.56681 4.66206 4.72774 4.74199 4.80290 4.82510 4.84130 4.92137 4.94913 4.96074 4.98669 5.01214 5.11389 5.16371 5.26696 5.27814 5.34024 5.40584 5.47736 5.53156 5.78470 6.21726 6.60407 6.82643 7.06725 7.30081 7.82635 8.00098 9.19228 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020437 B = 0.002202 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.704818 B =12713.019481 C =12905.105377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.148 3.852 3 H 0.061 0.939 4 N -0.704 5.704 5 C 0.518 3.482 6 O -0.581 6.581 7 C -0.061 4.061 8 C 0.069 3.931 9 C -0.262 4.262 10 S 0.146 5.854 11 C 0.049 3.951 12 C 0.007 3.993 13 C -0.132 4.132 14 C -0.151 4.151 15 C -0.128 4.128 16 N -0.489 5.489 17 C 0.171 3.829 18 H 0.065 0.935 19 C -0.156 4.156 20 N -0.747 5.747 21 C -0.218 4.218 22 H 0.066 0.934 23 C -0.061 4.061 24 N -0.981 5.981 25 Si 0.944 3.056 26 H -0.284 1.284 27 H -0.296 1.296 28 H -0.255 1.255 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.417 0.583 33 H 0.146 0.854 34 H 0.126 0.874 35 H 0.190 0.810 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.045 0.955 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.085 0.915 44 H 0.059 0.941 45 H 0.037 0.963 46 H 0.077 0.923 47 H 0.040 0.960 48 H 0.362 0.638 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.097 2.776 34.644 35.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.042 3.958 3 H 0.079 0.921 4 N -0.357 5.357 5 C 0.305 3.695 6 O -0.461 6.461 7 C -0.103 4.103 8 C -0.063 4.063 9 C -0.401 4.401 10 S 0.403 5.597 11 C -0.230 4.230 12 C 0.003 3.997 13 C -0.191 4.191 14 C -0.209 4.209 15 C -0.187 4.187 16 N -0.203 5.203 17 C 0.063 3.937 18 H 0.083 0.917 19 C -0.216 4.216 20 N -0.390 5.390 21 C -0.349 4.349 22 H 0.083 0.917 23 C -0.252 4.252 24 N -0.632 5.632 25 Si 0.772 3.228 26 H -0.210 1.210 27 H -0.223 1.223 28 H -0.180 1.180 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.254 0.746 33 H 0.164 0.836 34 H 0.144 0.856 35 H 0.207 0.793 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.103 0.897 44 H 0.078 0.922 45 H 0.056 0.944 46 H 0.095 0.905 47 H 0.059 0.941 48 H 0.195 0.805 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.856 3.865 35.112 35.983 hybrid contribution -0.502 0.070 -1.857 1.925 sum 6.354 3.935 33.255 34.084 Atomic orbital electron populations 1.21984 0.95004 1.02536 1.01050 1.20896 0.94211 0.96397 0.84288 0.92105 1.45780 1.66812 1.14705 1.08387 1.20911 0.76701 0.86886 0.85008 1.90703 1.51648 1.18123 1.85588 1.20261 1.06193 0.96528 0.87298 1.19739 0.88063 0.99994 0.98502 1.27089 1.04913 1.06195 1.01934 1.83644 1.06144 1.38719 1.31166 1.27504 0.99344 0.99909 0.96197 1.19400 0.90583 0.93620 0.96081 1.21818 1.01426 0.98360 0.97462 1.22028 1.02785 1.00096 0.95968 1.21794 0.96710 0.98964 1.01210 1.65918 1.30502 1.09051 1.14874 1.20547 0.93048 0.95834 0.84268 0.91696 1.22284 0.97152 1.00861 1.01283 1.42686 1.79961 1.09499 1.06895 1.18977 1.34509 0.94657 0.86778 0.91651 1.25361 1.02648 1.01773 0.95433 1.69848 1.54751 1.37451 1.01151 0.85580 0.77624 0.81709 0.77894 1.21007 1.22326 1.18005 0.93057 0.92936 0.91383 0.74555 0.83617 0.85623 0.79316 0.93645 0.89357 0.93618 0.91188 0.88727 0.92221 0.93154 0.89650 0.92192 0.94408 0.90470 0.94082 0.80488 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.62 9.33 71.98 0.67 -3.95 16 2 C 0.15 4.59 2.21 45.00 0.10 4.69 16 3 H 0.06 2.20 7.58 -2.39 -0.02 2.19 16 4 N -0.70 -16.25 4.38 -442.52 -1.94 -18.19 16 5 C 0.52 13.15 7.79 87.66 0.68 13.83 16 6 O -0.58 -20.54 15.70 -3.03 -0.05 -20.59 16 7 C -0.06 -1.06 6.11 29.10 0.18 -0.89 16 8 C 0.07 1.55 5.23 41.52 0.22 1.76 16 9 C -0.26 -5.20 11.14 66.78 0.74 -4.45 16 10 S 0.15 2.55 21.57 -56.49 -1.22 1.33 16 11 C 0.05 0.99 5.78 88.52 0.51 1.51 16 12 C 0.01 0.11 0.99 -52.93 -0.05 0.05 16 13 C -0.13 -2.18 8.45 71.98 0.61 -1.57 16 14 C -0.15 -1.50 7.54 71.98 0.54 -0.96 16 15 C -0.13 -1.62 8.45 71.98 0.61 -1.01 16 16 N -0.49 -11.99 10.51 -179.40 -1.89 -13.88 16 17 C 0.17 6.03 2.52 44.99 0.11 6.14 16 18 H 0.07 2.24 8.08 -2.39 -0.02 2.23 16 19 C -0.16 -5.08 9.33 71.98 0.67 -4.41 16 20 N -0.75 -33.83 4.23 -322.94 -1.37 -35.20 16 21 C -0.22 -12.03 10.41 84.03 0.87 -11.16 16 22 H 0.07 3.89 8.06 -2.91 -0.02 3.87 16 23 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 24 N -0.98 -62.37 13.97 21.65 0.30 -62.07 16 25 Si 0.94 46.09 27.73 68.60 1.90 47.99 16 26 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 27 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 28 H -0.26 -11.44 6.52 99.48 0.65 -10.79 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 1.87 7.44 -2.39 -0.02 1.85 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.42 6.76 8.39 -92.71 -0.78 5.98 16 33 H 0.15 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.19 2.92 8.06 -2.91 -0.02 2.89 16 36 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 0.60 7.92 -2.39 -0.02 0.58 16 40 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.06 0.65 7.92 -2.39 -0.02 0.63 16 42 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.08 1.92 7.45 -2.38 -0.02 1.90 16 47 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.36 16.43 5.45 -92.70 -0.51 15.92 16 49 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -76.31 410.12 2.28 -74.03 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: -0.40 Total: 30.06 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 6.94 Total: -3.48 kcal Atomic # 7 Polarization: -124.45 SS G_CDS: -4.89 Total: -129.34 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.05 Total: -20.59 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.90 Total: 47.99 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.22 Total: 1.33 kcal Total: -76.31 2.28 -74.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674740457.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.282 kcal (2) G-P(sol) polarization free energy of solvation -76.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds