Wall clock time and date at job start Tue Mar 31 2020 22:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46870 * 2 1 4 4 N 1.46500 * 109.47368 * 120.00062 * 2 1 3 5 5 C 1.34779 * 119.99741 * 275.00362 * 4 2 1 6 6 O 1.21277 * 120.00490 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99713 * 180.02562 * 5 4 2 8 8 C 1.53005 * 109.46978 * 179.97438 * 7 5 4 9 9 N 1.46500 * 109.47006 * 179.97438 * 8 7 5 10 10 C 1.34597 * 126.43966 * 124.99617 * 9 8 7 11 11 N 1.31071 * 106.68183 * 180.02562 * 10 9 8 12 12 N 1.28848 * 107.98796 * 359.97438 * 11 10 9 13 13 N 1.28738 * 109.39652 * 359.73863 * 12 11 10 14 14 C 1.52997 * 109.46975 * 240.00222 * 2 1 3 15 15 H 1.09000 * 109.47140 * 299.99612 * 14 2 1 16 16 C 1.53006 * 109.47164 * 179.97438 * 14 2 1 17 17 N 1.46902 * 109.47489 * 60.00021 * 14 2 1 18 18 C 1.46892 * 111.00363 * 205.00162 * 17 14 2 19 19 C 1.50698 * 109.47411 * 179.97438 * 18 17 14 20 20 O 1.21286 * 119.99732 * 359.97438 * 19 18 17 21 21 N 1.34784 * 120.00029 * 179.97438 * 19 18 17 22 22 C 1.37088 * 119.99698 * 180.02562 * 21 19 18 23 23 H 1.08006 * 120.00549 * 359.97438 * 22 21 19 24 24 C 1.38954 * 119.99928 * 180.02562 * 22 21 19 25 25 N 1.31408 * 120.00308 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 119.99830 * 359.97438 * 24 22 21 27 27 H 1.48491 * 109.47007 * 90.00227 * 26 24 22 28 28 H 1.48496 * 109.46998 * 210.00638 * 26 24 22 29 29 H 1.48500 * 109.46762 * 330.00221 * 26 24 22 30 30 H 1.09001 * 109.47367 * 59.99592 * 1 2 3 31 31 H 1.09004 * 109.47368 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47108 * 299.99894 * 1 2 3 33 33 H 0.96997 * 120.00110 * 94.99631 * 4 2 1 34 34 H 1.09005 * 109.46850 * 299.99222 * 7 5 4 35 35 H 1.09002 * 109.47423 * 59.99506 * 7 5 4 36 36 H 1.09005 * 109.46786 * 299.99373 * 8 7 5 37 37 H 1.08998 * 109.46907 * 59.99767 * 8 7 5 38 38 H 1.07998 * 126.65840 * 359.96653 * 10 9 8 39 39 H 1.09001 * 109.47002 * 59.99738 * 16 14 2 40 40 H 1.08993 * 109.46955 * 180.02562 * 16 14 2 41 41 H 1.09000 * 109.47050 * 300.00004 * 16 14 2 42 42 H 1.00903 * 111.00184 * 81.04204 * 17 14 2 43 43 H 1.08999 * 109.46953 * 300.00101 * 18 17 14 44 44 H 1.09001 * 109.47256 * 59.99520 * 18 17 14 45 45 H 0.96997 * 119.99752 * 359.97438 * 21 19 18 46 46 H 0.97001 * 120.00379 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0182 2.3571 6 8 1.8590 1.1586 2.4116 7 6 2.6500 -0.7285 3.5874 8 6 2.7019 0.2548 4.7586 9 7 3.1902 -0.4359 5.9547 10 6 4.2390 -0.0720 6.7158 11 7 4.3304 -0.9569 7.6783 12 7 3.3866 -1.8191 7.5171 13 7 2.6922 -1.5040 6.4799 14 6 2.0399 -0.7212 -1.2493 15 1 1.6766 -1.7489 -1.2493 16 6 3.5700 -0.7207 -1.2496 17 7 1.5503 -0.0287 -2.4487 18 6 1.4874 -0.9437 -3.5961 19 6 0.9814 -0.1996 -4.8050 20 8 0.7003 0.9771 -4.7189 21 7 0.8412 -0.8417 -5.9817 22 6 0.3814 -0.1646 -7.0814 23 1 0.1311 0.8832 -7.0049 24 6 0.2364 -0.8267 -8.2945 25 7 -0.2039 -0.1776 -9.3488 26 14 0.6687 -2.6392 -8.4268 27 1 -0.5315 -3.4579 -8.1199 28 1 1.1326 -2.9380 -9.8054 29 1 1.7487 -2.9622 -7.4601 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2490 -1.6317 1.1526 34 1 1.9777 -1.5508 3.8325 35 1 3.6493 -1.1203 3.3978 36 1 3.3743 1.0768 4.5132 37 1 1.7027 0.6468 4.9483 38 1 4.8812 0.7827 6.5625 39 1 3.9337 -1.2342 -0.3596 40 1 3.9332 -1.2340 -2.1398 41 1 3.9329 0.3071 -1.2498 42 1 2.1204 0.7768 -2.6593 43 1 2.4828 -1.3374 -3.8018 44 1 0.8111 -1.7673 -3.3675 45 1 1.0664 -1.7827 -6.0505 46 1 -0.3055 -0.6398 -10.1955 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674746927.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:06 Heat of formation + Delta-G solvation = 51.439976 kcal Electronic energy + Delta-G solvation = -28258.216919 eV Core-core repulsion = 24028.123240 eV Total energy + Delta-G solvation = -4230.093679 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.66286 -40.50018 -38.75269 -37.60690 -36.52610 -34.77723 -33.94549 -33.04002 -32.33752 -31.72845 -30.76237 -29.76417 -26.72088 -26.34305 -24.33595 -24.23354 -23.58193 -22.72532 -20.98646 -20.79785 -19.46420 -18.65290 -18.45034 -17.62775 -17.14252 -16.73594 -16.31639 -16.20641 -15.94769 -15.48404 -14.93859 -14.77603 -14.53328 -14.13090 -14.08327 -13.82124 -13.68574 -13.41945 -13.30408 -13.11962 -12.68433 -12.64459 -12.47199 -12.33869 -12.19105 -12.09021 -11.76001 -11.73618 -11.66128 -11.47923 -11.41427 -11.21136 -10.88974 -10.85026 -10.64911 -10.38773 -10.02585 -9.62866 -9.51789 -8.67727 -8.27599 -8.22196 -6.35928 -3.87671 0.73093 1.36972 1.77395 2.08811 2.64299 2.96899 3.02083 3.10723 3.56451 3.67151 3.72152 3.84324 3.99526 4.05585 4.18286 4.21624 4.42926 4.52851 4.66493 4.70785 4.84429 4.88338 4.95499 4.95798 5.16297 5.19767 5.25457 5.30619 5.44867 5.47847 5.59020 5.59472 5.68363 5.75888 5.84513 5.85080 5.90346 6.14864 6.39294 6.92619 7.00686 7.41911 7.52512 7.69474 8.09098 8.10672 8.54046 8.89822 9.36925 9.76446 10.77097 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.034876 B = 0.001558 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.656706 B =17970.862258 C =18306.794740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.153 3.847 3 H 0.092 0.908 4 N -0.719 5.719 5 C 0.522 3.478 6 O -0.537 6.537 7 C -0.158 4.158 8 C 0.130 3.870 9 N -0.309 5.309 10 C 0.163 3.837 11 N -0.308 5.308 12 N -0.076 5.076 13 N -0.092 5.092 14 C 0.077 3.923 15 H 0.082 0.918 16 C -0.185 4.185 17 N -0.657 5.657 18 C 0.050 3.950 19 C 0.449 3.551 20 O -0.564 6.564 21 N -0.590 5.590 22 C -0.306 4.306 23 H 0.120 0.880 24 C 0.042 3.958 25 N -0.880 5.880 26 Si 0.880 3.120 27 H -0.270 1.270 28 H -0.276 1.276 29 H -0.270 1.270 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.400 0.600 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.236 0.764 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.355 0.645 43 H 0.045 0.955 44 H 0.087 0.913 45 H 0.370 0.630 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.129 -4.546 26.494 28.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.048 3.952 3 H 0.110 0.890 4 N -0.370 5.370 5 C 0.307 3.693 6 O -0.414 6.414 7 C -0.199 4.199 8 C 0.009 3.991 9 N -0.111 5.111 10 C -0.136 4.136 11 N -0.157 5.157 12 N -0.070 5.070 13 N -0.079 5.079 14 C -0.035 4.035 15 H 0.100 0.900 16 C -0.244 4.244 17 N -0.290 5.290 18 C -0.083 4.083 19 C 0.234 3.766 20 O -0.445 6.445 21 N -0.229 5.229 22 C -0.435 4.435 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.520 5.520 26 Si 0.707 3.293 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.234 0.766 34 H 0.132 0.868 35 H 0.122 0.878 36 H 0.143 0.857 37 H 0.135 0.865 38 H 0.252 0.748 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.175 0.825 43 H 0.063 0.937 44 H 0.106 0.894 45 H 0.203 0.797 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.595 -4.105 27.193 28.813 hybrid contribution 1.634 -1.266 -1.274 2.428 sum 10.230 -5.371 25.919 28.378 Atomic orbital electron populations 1.22047 0.93967 1.01945 1.03215 1.20941 0.95131 0.97133 0.81946 0.89031 1.46045 1.66969 1.14104 1.09853 1.20016 0.77948 0.87161 0.84175 1.90775 1.50051 1.15697 1.84874 1.21913 1.05233 1.00104 0.92677 1.22008 1.04307 0.93923 0.78851 1.48832 1.21100 1.18878 1.22334 1.27815 0.92918 1.02875 0.90002 1.75040 1.17611 1.02338 1.20672 1.78683 1.00873 1.18585 1.08875 1.78888 1.20987 1.00869 1.07144 1.21762 0.92640 0.98219 0.90836 0.89996 1.22548 0.97021 1.02670 1.02127 1.59978 1.57735 1.09120 1.02141 1.21724 1.00010 0.95734 0.90813 1.19672 0.84910 0.88262 0.83743 1.90576 1.53784 1.15983 1.84206 1.42199 1.60018 1.11130 1.09548 1.19434 1.40240 0.98049 0.85789 0.86250 1.25042 0.97433 0.98386 0.95237 1.69617 1.44961 1.36544 1.00855 0.86671 0.78970 0.85168 0.78540 1.19587 1.20171 1.19592 0.89310 0.93099 0.93001 0.76595 0.86787 0.87793 0.85729 0.86490 0.74805 0.92292 0.92187 0.92047 0.82480 0.93658 0.89436 0.79722 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.33 37.16 0.35 -1.25 16 2 C 0.15 1.36 2.34 -67.93 -0.16 1.20 16 3 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 4 N -0.72 -4.27 4.38 -53.81 -0.24 -4.51 16 5 C 0.52 3.36 7.79 -10.98 -0.09 3.27 16 6 O -0.54 -5.48 15.64 5.56 0.09 -5.39 16 7 C -0.16 -0.51 5.85 -27.88 -0.16 -0.68 16 8 C 0.13 0.42 5.77 -4.04 -0.02 0.39 16 9 N -0.31 -1.67 3.44 -62.55 -0.22 -1.89 16 10 C 0.16 0.79 12.79 -90.39 -1.16 -0.37 16 11 N -0.31 -2.82 12.36 29.59 0.37 -2.46 16 12 N -0.08 -0.82 13.43 60.35 0.81 -0.01 16 13 N -0.09 -0.81 13.08 60.35 0.79 -0.03 16 14 C 0.08 0.68 2.22 -67.71 -0.15 0.53 16 15 H 0.08 0.66 7.80 -51.93 -0.40 0.25 16 16 C -0.18 -1.41 9.00 37.16 0.33 -1.07 16 17 N -0.66 -8.60 5.11 -108.00 -0.55 -9.15 16 18 C 0.05 0.73 5.96 -4.98 -0.03 0.70 16 19 C 0.45 9.57 7.82 -10.98 -0.09 9.49 16 20 O -0.56 -14.47 15.78 5.55 0.09 -14.38 16 21 N -0.59 -13.44 5.09 -10.96 -0.06 -13.49 16 22 C -0.31 -8.45 10.16 -14.94 -0.15 -8.60 16 23 H 0.12 3.78 7.39 -52.48 -0.39 3.40 16 24 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 25 N -0.88 -25.25 13.96 55.50 0.77 -24.47 16 26 Si 0.88 18.79 27.74 -169.99 -4.71 14.08 16 27 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 28 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 29 H -0.27 -5.20 6.52 56.52 0.37 -4.84 16 30 H 0.09 1.14 7.60 -51.93 -0.39 0.74 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.40 1.38 8.39 -40.82 -0.34 1.04 16 34 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.10 0.20 8.14 -51.93 -0.42 -0.23 16 36 H 0.12 0.16 8.04 -51.93 -0.42 -0.26 16 37 H 0.12 0.43 8.10 -51.93 -0.42 0.01 16 38 H 0.24 -0.08 8.06 -52.49 -0.42 -0.50 16 39 H 0.06 0.34 7.45 -51.93 -0.39 -0.05 16 40 H 0.06 0.49 7.45 -51.93 -0.39 0.10 16 41 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 42 H 0.35 5.01 8.17 -39.29 -0.32 4.68 16 43 H 0.05 0.57 7.43 -51.93 -0.39 0.19 16 44 H 0.09 1.13 8.06 -51.93 -0.42 0.71 16 45 H 0.37 7.35 5.76 -40.82 -0.24 7.11 16 46 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 391.55 15.07 5.90 5.90 Total: -1.00 -36.88 391.55 -4.98 -41.86 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -6.60 Total: 9.28 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -1.42 Total: 4.65 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 1.68 Total: -55.99 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: 0.17 Total: -19.77 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -4.71 Total: 14.08 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.88 -4.98 -41.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674746927.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.298 kcal (2) G-P(sol) polarization free energy of solvation -36.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds