Wall clock time and date at job start Tue Mar 31 2020 22:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46870 * 2 1 4 4 N 1.46500 * 109.47368 * 120.00062 * 2 1 3 5 5 C 1.34779 * 119.99741 * 275.00362 * 4 2 1 6 6 O 1.21277 * 120.00490 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99713 * 180.02562 * 5 4 2 8 8 C 1.53005 * 109.46978 * 179.97438 * 7 5 4 9 9 N 1.46500 * 109.47006 * 179.97438 * 8 7 5 10 10 C 1.34597 * 126.43966 * 124.99617 * 9 8 7 11 11 N 1.31071 * 106.68183 * 180.02562 * 10 9 8 12 12 N 1.28848 * 107.98796 * 359.97438 * 11 10 9 13 13 N 1.28738 * 109.39652 * 359.73863 * 12 11 10 14 14 C 1.52997 * 109.46975 * 240.00222 * 2 1 3 15 15 H 1.09000 * 109.47140 * 299.99612 * 14 2 1 16 16 C 1.53006 * 109.47164 * 179.97438 * 14 2 1 17 17 N 1.46902 * 109.47489 * 60.00021 * 14 2 1 18 18 C 1.46892 * 111.00363 * 205.00162 * 17 14 2 19 19 C 1.50698 * 109.47411 * 179.97438 * 18 17 14 20 20 O 1.21286 * 119.99732 * 359.97438 * 19 18 17 21 21 N 1.34784 * 120.00029 * 179.97438 * 19 18 17 22 22 C 1.37088 * 119.99698 * 180.02562 * 21 19 18 23 23 H 1.08006 * 120.00549 * 359.97438 * 22 21 19 24 24 C 1.38954 * 119.99928 * 180.02562 * 22 21 19 25 25 N 1.31408 * 120.00308 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 119.99830 * 359.97438 * 24 22 21 27 27 H 1.48491 * 109.47007 * 90.00227 * 26 24 22 28 28 H 1.48496 * 109.46998 * 210.00638 * 26 24 22 29 29 H 1.48500 * 109.46762 * 330.00221 * 26 24 22 30 30 H 1.09001 * 109.47367 * 59.99592 * 1 2 3 31 31 H 1.09004 * 109.47368 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47108 * 299.99894 * 1 2 3 33 33 H 0.96997 * 120.00110 * 94.99631 * 4 2 1 34 34 H 1.09005 * 109.46850 * 299.99222 * 7 5 4 35 35 H 1.09002 * 109.47423 * 59.99506 * 7 5 4 36 36 H 1.09005 * 109.46786 * 299.99373 * 8 7 5 37 37 H 1.08998 * 109.46907 * 59.99767 * 8 7 5 38 38 H 1.07998 * 126.65840 * 359.96653 * 10 9 8 39 39 H 1.09001 * 109.47002 * 59.99738 * 16 14 2 40 40 H 1.08993 * 109.46955 * 180.02562 * 16 14 2 41 41 H 1.09000 * 109.47050 * 300.00004 * 16 14 2 42 42 H 1.00903 * 111.00184 * 81.04204 * 17 14 2 43 43 H 1.08999 * 109.46953 * 300.00101 * 18 17 14 44 44 H 1.09001 * 109.47256 * 59.99520 * 18 17 14 45 45 H 0.96997 * 119.99752 * 359.97438 * 21 19 18 46 46 H 0.97001 * 120.00379 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0182 2.3571 6 8 1.8590 1.1586 2.4116 7 6 2.6500 -0.7285 3.5874 8 6 2.7019 0.2548 4.7586 9 7 3.1902 -0.4359 5.9547 10 6 4.2390 -0.0720 6.7158 11 7 4.3304 -0.9569 7.6783 12 7 3.3866 -1.8191 7.5171 13 7 2.6922 -1.5040 6.4799 14 6 2.0399 -0.7212 -1.2493 15 1 1.6766 -1.7489 -1.2493 16 6 3.5700 -0.7207 -1.2496 17 7 1.5503 -0.0287 -2.4487 18 6 1.4874 -0.9437 -3.5961 19 6 0.9814 -0.1996 -4.8050 20 8 0.7003 0.9771 -4.7189 21 7 0.8412 -0.8417 -5.9817 22 6 0.3814 -0.1646 -7.0814 23 1 0.1311 0.8832 -7.0049 24 6 0.2364 -0.8267 -8.2945 25 7 -0.2039 -0.1776 -9.3488 26 14 0.6687 -2.6392 -8.4268 27 1 -0.5315 -3.4579 -8.1199 28 1 1.1326 -2.9380 -9.8054 29 1 1.7487 -2.9622 -7.4601 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2490 -1.6317 1.1526 34 1 1.9777 -1.5508 3.8325 35 1 3.6493 -1.1203 3.3978 36 1 3.3743 1.0768 4.5132 37 1 1.7027 0.6468 4.9483 38 1 4.8812 0.7827 6.5625 39 1 3.9337 -1.2342 -0.3596 40 1 3.9332 -1.2340 -2.1398 41 1 3.9329 0.3071 -1.2498 42 1 2.1204 0.7768 -2.6593 43 1 2.4828 -1.3374 -3.8018 44 1 0.8111 -1.7673 -3.3675 45 1 1.0664 -1.7827 -6.0505 46 1 -0.3055 -0.6398 -10.1955 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674746927.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:05 Heat of formation + Delta-G solvation = 20.288313 kcal Electronic energy + Delta-G solvation = -28259.567756 eV Core-core repulsion = 24028.123240 eV Total energy + Delta-G solvation = -4231.444516 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.16554 -41.09380 -40.30390 -38.55160 -37.01876 -36.07465 -35.40686 -33.74042 -33.54913 -32.86094 -31.53603 -30.52608 -28.07412 -26.89909 -25.66014 -24.82407 -24.42530 -23.29260 -21.73701 -21.34827 -21.23679 -20.27286 -19.04964 -18.12364 -17.88409 -17.44704 -17.37642 -16.81338 -16.71736 -16.61160 -16.47171 -15.69730 -15.28674 -15.22067 -15.01213 -14.85585 -14.54386 -14.34486 -14.29410 -14.07973 -13.87212 -13.68539 -13.40133 -13.19619 -13.09577 -13.02100 -12.71657 -12.57008 -12.46974 -12.40002 -12.20109 -12.18719 -11.97351 -11.85958 -11.64082 -11.50028 -11.35654 -10.98623 -10.43420 -10.23504 -10.13042 -9.27216 -8.40169 -6.01215 0.28328 1.01096 1.23746 1.30584 1.37036 1.45642 1.59163 1.98303 2.09721 2.24210 2.82272 3.16504 3.25952 3.44872 3.51120 3.56282 3.66564 3.84993 3.89456 4.05383 4.17857 4.25655 4.29133 4.37467 4.44983 4.49245 4.51563 4.59114 4.62812 4.67402 4.82453 4.83407 4.89039 5.00533 5.10123 5.25985 5.26886 5.40241 5.52550 5.56788 5.92594 6.07328 6.36677 6.53249 6.61081 6.89934 7.23030 7.41693 7.57465 7.99022 8.77548 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.034876 B = 0.001558 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.656706 B =17970.862258 C =18306.794740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.162 3.838 3 H 0.067 0.933 4 N -0.707 5.707 5 C 0.524 3.476 6 O -0.577 6.577 7 C -0.146 4.146 8 C 0.128 3.872 9 N -0.302 5.302 10 C 0.182 3.818 11 N -0.346 5.346 12 N -0.114 5.114 13 N -0.109 5.109 14 C 0.083 3.917 15 H 0.104 0.896 16 C -0.179 4.179 17 N -0.677 5.677 18 C 0.066 3.934 19 C 0.447 3.553 20 O -0.615 6.615 21 N -0.591 5.591 22 C -0.329 4.329 23 H 0.054 0.946 24 C -0.016 4.016 25 N -0.936 5.936 26 Si 0.966 3.034 27 H -0.258 1.258 28 H -0.277 1.277 29 H -0.228 1.228 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.417 0.583 34 H 0.118 0.882 35 H 0.127 0.873 36 H 0.150 0.850 37 H 0.111 0.889 38 H 0.285 0.715 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.345 0.655 43 H 0.079 0.921 44 H 0.117 0.883 45 H 0.390 0.610 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.355 -7.815 27.994 31.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.056 3.944 3 H 0.085 0.915 4 N -0.359 5.359 5 C 0.311 3.689 6 O -0.457 6.457 7 C -0.186 4.186 8 C 0.008 3.992 9 N -0.104 5.104 10 C -0.116 4.116 11 N -0.195 5.195 12 N -0.108 5.108 13 N -0.096 5.096 14 C -0.027 4.027 15 H 0.122 0.878 16 C -0.238 4.238 17 N -0.309 5.309 18 C -0.066 4.066 19 C 0.235 3.765 20 O -0.500 6.500 21 N -0.233 5.233 22 C -0.459 4.459 23 H 0.072 0.928 24 C -0.214 4.214 25 N -0.577 5.577 26 Si 0.786 3.214 27 H -0.182 1.182 28 H -0.203 1.203 29 H -0.151 1.151 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.254 0.746 34 H 0.136 0.864 35 H 0.145 0.855 36 H 0.168 0.832 37 H 0.129 0.871 38 H 0.300 0.700 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.164 0.836 43 H 0.097 0.903 44 H 0.135 0.865 45 H 0.226 0.774 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.839 -7.420 28.734 31.594 hybrid contribution 0.890 -0.025 -1.711 1.929 sum 11.729 -7.444 27.022 30.384 Atomic orbital electron populations 1.21955 0.95282 1.02142 1.01247 1.20619 0.93949 0.96443 0.83375 0.91493 1.45846 1.66457 1.14800 1.08820 1.20499 0.76952 0.86652 0.84837 1.90772 1.51770 1.17686 1.85495 1.21825 1.06368 0.99635 0.90796 1.22206 1.04777 0.94255 0.77992 1.48947 1.20904 1.18054 1.22519 1.28683 0.92226 1.02611 0.88090 1.74957 1.18191 1.03531 1.22784 1.78658 1.02019 1.20047 1.10086 1.78806 1.21393 1.02254 1.07164 1.21788 0.93736 0.98571 0.88595 0.87772 1.22482 0.95498 1.02350 1.03431 1.59937 1.58790 1.09248 1.02964 1.21635 1.01929 0.95259 0.87776 1.21075 0.82438 0.87957 0.85001 1.90557 1.55283 1.18848 1.85269 1.42022 1.60603 1.11890 1.08787 1.19005 1.42335 0.96084 0.88452 0.92829 1.26135 0.96409 1.05049 0.93839 1.69810 1.46397 1.39612 1.01837 0.85353 0.80237 0.76428 0.79402 1.18234 1.20259 1.15116 0.92208 0.91718 0.94065 0.74603 0.86357 0.85507 0.83238 0.87110 0.69981 0.89745 0.92038 0.93256 0.83570 0.90288 0.86492 0.77434 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.33 71.98 0.67 -2.30 16 2 C 0.16 2.62 2.34 44.99 0.11 2.72 16 3 H 0.07 1.45 7.58 -2.39 -0.02 1.44 16 4 N -0.71 -6.36 4.38 -442.54 -1.94 -8.30 16 5 C 0.52 5.51 7.79 87.66 0.68 6.19 16 6 O -0.58 -11.13 15.64 -3.02 -0.05 -11.18 16 7 C -0.15 -0.49 5.85 29.85 0.17 -0.32 16 8 C 0.13 0.47 5.77 86.38 0.50 0.97 16 9 N -0.30 -2.56 3.44 -351.81 -1.21 -3.77 16 10 C 0.18 1.28 12.79 180.27 2.31 3.58 16 11 N -0.35 -5.95 12.36 -60.30 -0.75 -6.69 16 12 N -0.11 -2.41 13.43 37.01 0.50 -1.91 16 13 N -0.11 -1.79 13.08 37.02 0.48 -1.31 16 14 C 0.08 1.23 2.22 44.92 0.10 1.33 16 15 H 0.10 1.14 7.80 -2.39 -0.02 1.13 16 16 C -0.18 -2.08 9.00 71.98 0.65 -1.43 16 17 N -0.68 -16.66 5.11 -495.59 -2.53 -19.19 16 18 C 0.07 1.73 5.96 85.56 0.51 2.24 16 19 C 0.45 18.98 7.82 87.66 0.69 19.67 16 20 O -0.62 -32.93 15.78 -3.05 -0.05 -32.98 16 21 N -0.59 -26.61 5.09 -306.98 -1.56 -28.17 16 22 C -0.33 -18.91 10.16 84.04 0.85 -18.06 16 23 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 24 C -0.02 -0.86 5.50 84.93 0.47 -0.40 16 25 N -0.94 -55.80 13.96 21.66 0.30 -55.50 16 26 Si 0.97 37.47 27.74 68.60 1.90 39.37 16 27 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 28 H -0.28 -10.78 7.11 99.48 0.71 -10.08 16 29 H -0.23 -7.23 6.52 99.48 0.65 -6.58 16 30 H 0.06 1.56 7.60 -2.39 -0.02 1.54 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.42 1.10 8.39 -92.71 -0.78 0.33 16 34 H 0.12 0.39 8.14 -2.38 -0.02 0.37 16 35 H 0.13 -0.08 8.14 -2.39 -0.02 -0.10 16 36 H 0.15 -0.15 8.04 -2.38 -0.02 -0.17 16 37 H 0.11 0.62 8.10 -2.39 -0.02 0.60 16 38 H 0.28 -1.43 8.06 -2.91 -0.02 -1.45 16 39 H 0.08 0.56 7.45 -2.39 -0.02 0.55 16 40 H 0.06 0.74 7.45 -2.39 -0.02 0.72 16 41 H 0.05 0.71 8.13 -2.39 -0.02 0.69 16 42 H 0.35 9.65 8.17 -89.69 -0.73 8.91 16 43 H 0.08 1.60 7.43 -2.39 -0.02 1.59 16 44 H 0.12 2.45 8.06 -2.39 -0.02 2.43 16 45 H 0.39 14.24 5.76 -92.71 -0.53 13.71 16 46 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -90.32 391.55 1.75 -88.58 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: -1.06 Total: 26.86 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 7.70 Total: 14.20 kcal Atomic # 7 Polarization: -118.14 SS G_CDS: -6.70 Total: -124.85 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -0.10 Total: -44.16 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 1.90 Total: 39.37 kcal Total: -90.32 1.75 -88.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674746927.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.868 kcal (2) G-P(sol) polarization free energy of solvation -90.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds