Wall clock time and date at job start Tue Mar 31 2020 23:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46950 * 2 1 4 4 C 1.46493 * 120.00085 * 269.99919 * 3 2 1 5 5 C 1.53001 * 109.47199 * 270.00198 * 4 3 2 6 6 N 1.46504 * 109.46872 * 180.02562 * 5 4 3 7 7 C 1.36939 * 119.99870 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00005 * 0.02562 * 7 6 5 9 9 C 1.38811 * 120.00035 * 180.02562 * 7 6 5 10 10 N 1.31616 * 119.99994 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99770 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47105 * 90.00431 * 11 9 7 13 13 H 1.48504 * 109.46937 * 209.99706 * 11 9 7 14 14 H 1.48496 * 109.47263 * 329.99824 * 11 9 7 15 15 C 1.34777 * 119.99606 * 90.00529 * 3 2 1 16 16 O 1.21280 * 119.99786 * 179.97438 * 15 3 2 17 17 C 1.50699 * 120.00118 * 359.97438 * 15 3 2 18 18 C 1.50702 * 109.46945 * 180.02562 * 17 15 3 19 19 C 1.33636 * 122.75111 * 85.02567 * 18 17 15 20 20 S 1.76195 * 107.92420 * 179.75695 * 19 18 17 21 21 C 1.70982 * 90.28425 * 0.28306 * 20 19 18 22 22 C 1.50699 * 124.91863 * 179.97438 * 21 20 19 23 23 C 1.52997 * 109.47078 * 239.69654 * 22 21 20 24 24 C 1.52992 * 109.46956 * 119.69342 * 22 21 20 25 25 C 1.53006 * 109.46866 * 359.69477 * 22 21 20 26 26 N 1.29028 * 110.16088 * 359.71148 * 21 20 19 27 27 H 1.09000 * 109.47040 * 299.99560 * 1 2 3 28 28 H 1.08996 * 109.46852 * 60.00105 * 1 2 3 29 29 H 1.09000 * 109.46525 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47040 * 240.00439 * 2 1 3 31 31 H 1.09000 * 109.47348 * 120.00422 * 2 1 3 32 32 H 1.09004 * 109.47552 * 30.00610 * 4 3 2 33 33 H 1.09000 * 109.46863 * 150.00268 * 4 3 2 34 34 H 1.08997 * 109.47117 * 299.99962 * 5 4 3 35 35 H 1.09000 * 109.47156 * 60.00250 * 5 4 3 36 36 H 0.96997 * 120.00507 * 0.02562 * 6 5 4 37 37 H 0.96998 * 120.00158 * 179.97438 * 10 9 7 38 38 H 1.09000 * 109.47011 * 60.00378 * 17 15 3 39 39 H 1.09002 * 109.47253 * 300.00240 * 17 15 3 40 40 H 1.08000 * 126.03728 * 359.97438 * 19 18 17 41 41 H 1.09002 * 109.47153 * 299.99793 * 23 22 21 42 42 H 1.09001 * 109.46832 * 179.97438 * 23 22 21 43 43 H 1.09004 * 109.47261 * 59.99965 * 23 22 21 44 44 H 1.09001 * 109.47066 * 180.02562 * 24 22 21 45 45 H 1.08996 * 109.47747 * 299.99900 * 24 22 21 46 46 H 1.09002 * 109.47103 * 60.00312 * 24 22 21 47 47 H 1.08993 * 109.46955 * 300.00219 * 25 22 21 48 48 H 1.09000 * 109.47050 * 60.00048 * 25 22 21 49 49 H 1.09001 * 109.47002 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.7075 1.8315 -1.7103 6 7 3.9518 2.5226 -2.9788 7 6 5.1842 2.4507 -3.5715 8 1 5.9759 1.8840 -3.1040 9 6 5.4158 3.1060 -4.7730 10 7 4.4511 3.7969 -5.3424 11 14 7.0968 3.0071 -5.5818 12 1 7.1377 1.8386 -6.4972 13 1 7.3481 4.2502 -6.3545 14 1 8.1407 2.8542 -4.5368 15 6 2.2431 2.0165 1.1672 16 8 2.6477 3.1598 1.1673 17 6 1.9915 1.3062 2.4723 18 6 2.3175 2.2296 3.6178 19 6 1.4429 3.1156 4.1036 20 16 2.2226 3.9767 5.4284 21 6 3.6499 3.0655 5.1919 22 6 4.9119 3.2133 6.0022 23 6 6.0691 3.5981 5.0783 24 6 5.2315 1.8871 6.6948 25 6 4.7162 4.3050 7.0563 26 7 3.4882 2.2292 4.2228 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.5817 1.6879 -2.0284 33 1 2.0956 3.1411 -1.1383 34 1 4.3883 2.2156 -0.9507 35 1 3.8745 0.7622 -1.8407 36 1 3.2409 3.0319 -3.3985 37 1 4.6131 4.2551 -6.1819 38 1 2.6214 0.4185 2.5301 39 1 0.9434 1.0124 2.5299 40 1 0.4350 3.2733 3.7492 41 1 6.2085 2.8204 4.3273 42 1 6.9817 3.7055 5.6645 43 1 5.8413 4.5430 4.5848 44 1 6.1440 1.9942 7.2813 45 1 4.4071 1.6130 7.3530 46 1 5.3709 1.1094 5.9439 47 1 4.4884 5.2498 6.5628 48 1 3.8917 4.0309 7.7145 49 1 5.6288 4.4116 7.6427 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699210470.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:18 Heat of formation + Delta-G solvation = 7.633819 kcal Electronic energy + Delta-G solvation = -27249.754815 eV Core-core repulsion = 23531.762022 eV Total energy + Delta-G solvation = -3717.992793 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.52513 -39.43099 -37.04837 -36.07289 -34.58168 -32.19980 -31.36719 -30.27938 -28.68755 -27.72816 -27.48233 -27.08466 -25.12574 -23.71466 -23.33945 -21.62100 -20.41886 -19.44100 -18.85316 -17.63366 -17.20969 -16.97858 -16.20400 -15.69369 -15.25294 -14.95504 -14.51052 -14.37452 -14.08685 -14.00708 -13.92369 -13.61262 -13.42855 -13.34441 -13.20270 -12.89032 -12.76944 -12.55475 -12.42751 -12.19517 -11.94414 -11.90287 -11.70196 -11.46456 -11.28679 -11.23611 -11.22100 -11.11321 -10.94072 -10.84500 -10.62928 -10.07807 -9.76726 -9.67048 -9.62801 -9.42328 -8.83324 -8.79770 -8.48092 -6.88878 -5.72311 -3.01206 0.64296 1.27557 1.64858 2.60228 2.79037 3.20933 3.47002 3.51963 3.54452 3.76810 4.42456 4.58193 4.61980 4.63075 4.65514 4.81209 4.90288 4.97683 5.10734 5.14974 5.23756 5.24815 5.30414 5.34803 5.47129 5.54977 5.56852 5.60170 5.61377 5.65288 5.66714 5.68726 5.70035 5.78416 5.86652 5.95586 6.04508 6.08461 6.09746 6.16570 6.19100 6.62184 6.79868 6.97757 7.55112 7.69185 7.74404 8.35175 8.46520 9.57176 10.13736 10.48953 11.50761 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011060 B = 0.002665 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.020578 B =10504.583213 C =12147.197487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.608 5.608 4 C 0.110 3.890 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.236 4.236 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.516 3.484 16 O -0.524 6.524 17 C -0.067 4.067 18 C 0.092 3.908 19 C -0.250 4.250 20 S 0.116 5.884 21 C 0.064 3.936 22 C 0.011 3.989 23 C -0.136 4.136 24 C -0.133 4.133 25 C -0.153 4.153 26 N -0.459 5.459 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.022 0.978 35 H 0.018 0.982 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.173 0.827 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.062 0.938 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.434 -6.205 27.510 29.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 N -0.342 5.342 4 C -0.013 4.013 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.367 4.367 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.207 1.207 15 C 0.302 3.698 16 O -0.399 6.399 17 C -0.109 4.109 18 C -0.040 4.040 19 C -0.389 4.389 20 S 0.373 5.627 21 C -0.215 4.215 22 C 0.007 3.993 23 C -0.194 4.194 24 C -0.191 4.191 25 C -0.211 4.211 26 N -0.172 5.172 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.040 0.960 35 H 0.035 0.965 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.191 0.809 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.081 0.919 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.944 -5.159 28.024 29.581 hybrid contribution 0.320 -0.463 -1.593 1.690 sum -7.625 -5.622 26.430 28.077 Atomic orbital electron populations 1.22227 0.95947 1.02217 1.02583 1.21615 0.94284 0.82680 1.03657 1.47915 1.65889 1.14215 1.06136 1.21671 0.98068 0.98328 0.83210 1.20903 0.92842 0.95442 0.89337 1.42214 1.12878 1.60736 1.21680 1.19214 0.89304 1.25912 1.02304 0.91227 1.24744 0.97857 1.00372 0.98088 1.69660 1.31616 1.37422 1.19621 0.86163 0.83719 0.76946 0.79239 1.21716 1.21730 1.20732 1.20301 0.77837 0.86808 0.84841 1.90753 1.44287 1.17831 1.87050 1.20258 1.03878 0.97869 0.88910 1.19439 0.88309 0.98406 0.97828 1.26725 1.05986 1.02948 1.03257 1.83789 1.07616 1.39753 1.31564 1.26989 0.99826 0.96411 0.98243 1.19232 0.89276 0.97252 0.93540 1.21852 0.95937 1.02506 0.99154 1.21829 1.01458 0.95497 1.00366 1.22024 1.02898 0.97948 0.98269 1.65875 1.21450 1.22463 1.07437 0.92669 0.91942 0.91452 0.89671 0.90455 0.90559 0.89857 0.95980 0.96468 0.78304 0.93520 0.87177 0.87484 0.80936 0.91256 0.91672 0.92304 0.91662 0.92634 0.91382 0.91758 0.91929 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.24 37.16 0.38 -1.02 16 2 C 0.10 1.02 5.93 -4.04 -0.02 0.99 16 3 N -0.61 -8.76 2.47 -173.68 -0.43 -9.19 16 4 C 0.11 1.96 5.52 -4.05 -0.02 1.93 16 5 C 0.14 3.16 6.58 -4.04 -0.03 3.14 16 6 N -0.73 -19.68 5.60 -59.91 -0.34 -20.02 16 7 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 10 N -0.93 -29.15 13.06 55.49 0.72 -28.43 16 11 Si 0.91 23.18 29.55 -169.99 -5.02 18.16 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 14 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 15 C 0.52 8.06 7.67 -10.99 -0.08 7.97 16 16 O -0.52 -10.74 15.61 5.56 0.09 -10.65 16 17 C -0.07 -0.76 4.67 -29.03 -0.14 -0.90 16 18 C 0.09 1.22 5.23 -84.23 -0.44 0.78 16 19 C -0.25 -2.93 11.14 29.12 0.32 -2.61 16 20 S 0.12 1.21 21.57 -107.50 -2.32 -1.11 16 21 C 0.06 0.76 5.78 -13.46 -0.08 0.68 16 22 C 0.01 0.10 0.99 -155.66 -0.15 -0.05 16 23 C -0.14 -1.37 8.45 37.16 0.31 -1.06 16 24 C -0.13 -1.06 8.45 37.15 0.31 -0.75 16 25 C -0.15 -1.08 7.54 37.16 0.28 -0.80 16 26 N -0.46 -6.41 10.51 -8.06 -0.08 -6.49 16 27 H 0.05 0.42 7.22 -51.93 -0.37 0.04 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 31 H 0.08 0.62 6.44 -51.93 -0.33 0.28 16 32 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 33 H 0.08 1.66 7.42 -51.93 -0.39 1.28 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.38 10.69 7.67 -40.82 -0.31 10.37 16 37 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.11 1.13 7.40 -51.93 -0.38 0.75 16 39 H 0.11 0.87 7.18 -51.93 -0.37 0.50 16 40 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.06 0.47 7.93 -51.93 -0.41 0.06 16 48 H 0.06 0.39 7.92 -51.93 -0.41 -0.02 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 412.46 15.07 6.22 6.22 Total: -1.00 -36.37 412.46 -9.21 -45.58 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -8.45 Total: 5.28 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 0.40 Total: 0.66 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: -0.13 Total: -64.13 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.16 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.32 Total: -1.11 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -36.37 -9.21 -45.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699210470.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.214 kcal (2) G-P(sol) polarization free energy of solvation -36.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds