Wall clock time and date at job start Tue Mar 31 2020 23:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46950 * 2 1 4 4 C 1.46493 * 120.00085 * 269.99919 * 3 2 1 5 5 C 1.53001 * 109.47199 * 270.00198 * 4 3 2 6 6 N 1.46504 * 109.46872 * 180.02562 * 5 4 3 7 7 C 1.36939 * 119.99870 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00005 * 0.02562 * 7 6 5 9 9 C 1.38811 * 120.00035 * 180.02562 * 7 6 5 10 10 N 1.31616 * 119.99994 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99770 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47105 * 90.00431 * 11 9 7 13 13 H 1.48504 * 109.46937 * 209.99706 * 11 9 7 14 14 H 1.48496 * 109.47263 * 329.99824 * 11 9 7 15 15 C 1.34777 * 119.99606 * 90.00529 * 3 2 1 16 16 O 1.21280 * 119.99786 * 179.97438 * 15 3 2 17 17 C 1.50699 * 120.00118 * 359.97438 * 15 3 2 18 18 C 1.50702 * 109.46945 * 180.02562 * 17 15 3 19 19 C 1.33636 * 122.75111 * 85.02567 * 18 17 15 20 20 S 1.76195 * 107.92420 * 179.75695 * 19 18 17 21 21 C 1.70982 * 90.28425 * 0.28306 * 20 19 18 22 22 C 1.50699 * 124.91863 * 179.97438 * 21 20 19 23 23 C 1.52997 * 109.47078 * 239.69654 * 22 21 20 24 24 C 1.52992 * 109.46956 * 119.69342 * 22 21 20 25 25 C 1.53006 * 109.46866 * 359.69477 * 22 21 20 26 26 N 1.29028 * 110.16088 * 359.71148 * 21 20 19 27 27 H 1.09000 * 109.47040 * 299.99560 * 1 2 3 28 28 H 1.08996 * 109.46852 * 60.00105 * 1 2 3 29 29 H 1.09000 * 109.46525 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47040 * 240.00439 * 2 1 3 31 31 H 1.09000 * 109.47348 * 120.00422 * 2 1 3 32 32 H 1.09004 * 109.47552 * 30.00610 * 4 3 2 33 33 H 1.09000 * 109.46863 * 150.00268 * 4 3 2 34 34 H 1.08997 * 109.47117 * 299.99962 * 5 4 3 35 35 H 1.09000 * 109.47156 * 60.00250 * 5 4 3 36 36 H 0.96997 * 120.00507 * 0.02562 * 6 5 4 37 37 H 0.96998 * 120.00158 * 179.97438 * 10 9 7 38 38 H 1.09000 * 109.47011 * 60.00378 * 17 15 3 39 39 H 1.09002 * 109.47253 * 300.00240 * 17 15 3 40 40 H 1.08000 * 126.03728 * 359.97438 * 19 18 17 41 41 H 1.09002 * 109.47153 * 299.99793 * 23 22 21 42 42 H 1.09001 * 109.46832 * 179.97438 * 23 22 21 43 43 H 1.09004 * 109.47261 * 59.99965 * 23 22 21 44 44 H 1.09001 * 109.47066 * 180.02562 * 24 22 21 45 45 H 1.08996 * 109.47747 * 299.99900 * 24 22 21 46 46 H 1.09002 * 109.47103 * 60.00312 * 24 22 21 47 47 H 1.08993 * 109.46955 * 300.00219 * 25 22 21 48 48 H 1.09000 * 109.47050 * 60.00048 * 25 22 21 49 49 H 1.09001 * 109.47002 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.7075 1.8315 -1.7103 6 7 3.9518 2.5226 -2.9788 7 6 5.1842 2.4507 -3.5715 8 1 5.9759 1.8840 -3.1040 9 6 5.4158 3.1060 -4.7730 10 7 4.4511 3.7969 -5.3424 11 14 7.0968 3.0071 -5.5818 12 1 7.1377 1.8386 -6.4972 13 1 7.3481 4.2502 -6.3545 14 1 8.1407 2.8542 -4.5368 15 6 2.2431 2.0165 1.1672 16 8 2.6477 3.1598 1.1673 17 6 1.9915 1.3062 2.4723 18 6 2.3175 2.2296 3.6178 19 6 1.4429 3.1156 4.1036 20 16 2.2226 3.9767 5.4284 21 6 3.6499 3.0655 5.1919 22 6 4.9119 3.2133 6.0022 23 6 6.0691 3.5981 5.0783 24 6 5.2315 1.8871 6.6948 25 6 4.7162 4.3050 7.0563 26 7 3.4882 2.2292 4.2228 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.5817 1.6879 -2.0284 33 1 2.0956 3.1411 -1.1383 34 1 4.3883 2.2156 -0.9507 35 1 3.8745 0.7622 -1.8407 36 1 3.2409 3.0319 -3.3985 37 1 4.6131 4.2551 -6.1819 38 1 2.6214 0.4185 2.5301 39 1 0.9434 1.0124 2.5299 40 1 0.4350 3.2733 3.7492 41 1 6.2085 2.8204 4.3273 42 1 6.9817 3.7055 5.6645 43 1 5.8413 4.5430 4.5848 44 1 6.1440 1.9942 7.2813 45 1 4.4071 1.6130 7.3530 46 1 5.3709 1.1094 5.9439 47 1 4.4884 5.2498 6.5628 48 1 3.8917 4.0309 7.7145 49 1 5.6288 4.4116 7.6427 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699210470.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:17 Heat of formation + Delta-G solvation = -16.141726 kcal Electronic energy + Delta-G solvation = -27250.785800 eV Core-core repulsion = 23531.762022 eV Total energy + Delta-G solvation = -3719.023778 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.54503 -40.50669 -37.86941 -37.40383 -36.40069 -33.81677 -32.64835 -31.53285 -29.87706 -28.50884 -28.34358 -28.20276 -26.15421 -25.47474 -24.28511 -23.37575 -21.38109 -20.27369 -20.02649 -19.20041 -18.51484 -18.16261 -17.44618 -16.74101 -16.55132 -16.25453 -15.85929 -15.34074 -15.32608 -15.20682 -15.10414 -14.86747 -14.76133 -14.56842 -14.25081 -14.10640 -13.78925 -13.34372 -13.11200 -13.11037 -13.03300 -12.93047 -12.77097 -12.65707 -12.63779 -12.44930 -12.35681 -12.22510 -12.16836 -11.99138 -11.94575 -11.90610 -11.86241 -11.02227 -10.94585 -10.55081 -10.29796 -9.75174 -9.67261 -9.10870 -8.01284 -5.32495 -0.23247 0.44673 0.77981 1.43136 1.46413 1.54533 1.57629 1.63052 2.12068 2.53195 2.99096 3.31621 3.56674 3.67318 3.90479 3.93934 3.96992 4.04455 4.12574 4.17744 4.18658 4.22234 4.36692 4.41365 4.46609 4.51948 4.59886 4.65389 4.71633 4.77546 4.81187 4.88436 4.92743 4.95030 4.95382 5.00047 5.04837 5.06660 5.10980 5.25163 5.32645 5.39188 5.39703 5.41692 5.55440 6.20187 6.39957 6.81569 7.15548 7.26148 7.97072 8.23338 9.22144 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011060 B = 0.002665 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.020578 B =10504.583213 C =12147.197487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.093 3.907 3 N -0.604 5.604 4 C 0.126 3.874 5 C 0.151 3.849 6 N -0.742 5.742 7 C -0.253 4.253 8 H 0.071 0.929 9 C -0.073 4.073 10 N -0.968 5.968 11 Si 0.979 3.021 12 H -0.279 1.279 13 H -0.291 1.291 14 H -0.273 1.273 15 C 0.510 3.490 16 O -0.583 6.583 17 C -0.055 4.055 18 C 0.066 3.934 19 C -0.261 4.261 20 S 0.152 5.848 21 C 0.048 3.952 22 C 0.007 3.993 23 C -0.133 4.133 24 C -0.127 4.127 25 C -0.150 4.150 26 N -0.492 5.492 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.056 0.944 34 H -0.007 1.007 35 H 0.030 0.970 36 H 0.376 0.624 37 H 0.254 0.746 38 H 0.124 0.876 39 H 0.146 0.854 40 H 0.191 0.809 41 H 0.042 0.958 42 H 0.089 0.911 43 H 0.042 0.958 44 H 0.085 0.915 45 H 0.062 0.938 46 H 0.048 0.952 47 H 0.058 0.942 48 H 0.072 0.928 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.764 -7.653 29.248 31.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.028 4.028 3 N -0.336 5.336 4 C 0.002 3.998 5 C 0.023 3.977 6 N -0.386 5.386 7 C -0.384 4.384 8 H 0.089 0.911 9 C -0.265 4.265 10 N -0.618 5.618 11 Si 0.807 3.193 12 H -0.206 1.206 13 H -0.218 1.218 14 H -0.198 1.198 15 C 0.299 3.701 16 O -0.462 6.462 17 C -0.097 4.097 18 C -0.065 4.065 19 C -0.400 4.400 20 S 0.409 5.591 21 C -0.230 4.230 22 C 0.003 3.997 23 C -0.192 4.192 24 C -0.186 4.186 25 C -0.208 4.208 26 N -0.206 5.206 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.011 0.989 35 H 0.048 0.952 36 H 0.208 0.792 37 H 0.063 0.937 38 H 0.142 0.858 39 H 0.164 0.836 40 H 0.208 0.792 41 H 0.061 0.939 42 H 0.108 0.892 43 H 0.061 0.939 44 H 0.104 0.896 45 H 0.081 0.919 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.091 0.909 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.297 -6.672 29.796 31.641 hybrid contribution 0.412 -0.007 -2.086 2.126 sum -7.885 -6.678 27.711 29.575 Atomic orbital electron populations 1.22184 0.94041 1.03806 1.02329 1.21980 0.95819 0.80007 1.05025 1.48017 1.65321 1.15753 1.04535 1.21263 0.95612 0.97480 0.85475 1.20929 0.94996 0.95119 0.86655 1.42389 1.12088 1.61107 1.23002 1.19577 0.90290 1.25861 1.02719 0.91109 1.25642 1.01875 1.00217 0.98762 1.69816 1.33703 1.38301 1.19947 0.85072 0.79083 0.76968 0.78207 1.20569 1.21764 1.19791 1.21105 0.76429 0.86272 0.86253 1.90723 1.46986 1.20592 1.87934 1.20302 1.06439 0.97249 0.85713 1.19748 0.88578 0.99581 0.98636 1.27083 1.06829 1.02584 1.03554 1.83563 1.06366 1.38659 1.30537 1.27524 1.01220 0.96190 0.98113 1.19406 0.87827 0.98775 0.93664 1.21831 0.97680 1.00633 0.99084 1.21787 1.02731 0.94111 0.99955 1.22026 1.04380 0.96651 0.97752 1.65906 1.22214 1.23926 1.08527 0.91765 0.93411 0.88877 0.89792 0.87675 0.88704 0.92556 0.98908 0.95200 0.79239 0.93695 0.85831 0.83640 0.79189 0.93887 0.89195 0.93900 0.89580 0.91927 0.93269 0.92338 0.90939 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 71.98 0.74 -1.49 16 2 C 0.09 1.66 5.93 86.38 0.51 2.17 16 3 N -0.60 -17.11 2.47 -821.80 -2.03 -19.14 16 4 C 0.13 4.58 5.52 86.38 0.48 5.05 16 5 C 0.15 6.84 6.58 86.38 0.57 7.41 16 6 N -0.74 -41.11 5.60 -343.44 -1.92 -43.03 16 7 C -0.25 -15.14 9.99 84.03 0.84 -14.30 16 8 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 9 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 10 N -0.97 -61.28 13.06 21.65 0.28 -61.00 16 11 Si 0.98 47.90 29.55 68.60 2.03 49.93 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 14 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 15 C 0.51 15.97 7.67 87.66 0.67 16.64 16 16 O -0.58 -24.91 15.61 -3.03 -0.05 -24.95 16 17 C -0.06 -1.19 4.67 29.10 0.14 -1.05 16 18 C 0.07 1.72 5.23 41.52 0.22 1.94 16 19 C -0.26 -5.91 11.14 66.78 0.74 -5.17 16 20 S 0.15 3.03 21.57 -56.49 -1.22 1.81 16 21 C 0.05 1.12 5.78 88.52 0.51 1.63 16 22 C 0.01 0.13 0.99 -52.93 -0.05 0.08 16 23 C -0.13 -2.74 8.45 71.98 0.61 -2.13 16 24 C -0.13 -1.89 8.45 71.98 0.61 -1.28 16 25 C -0.15 -1.85 7.54 71.98 0.54 -1.31 16 26 N -0.49 -13.85 10.51 -179.40 -1.89 -15.74 16 27 H 0.06 0.76 7.22 -2.39 -0.02 0.75 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 1.55 8.07 -2.39 -0.02 1.53 16 31 H 0.11 1.33 6.44 -2.39 -0.02 1.31 16 32 H 0.09 3.09 8.07 -2.38 -0.02 3.07 16 33 H 0.06 2.37 7.42 -2.39 -0.02 2.35 16 34 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 35 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.38 21.64 7.67 -92.71 -0.71 20.93 16 37 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 38 H 0.12 2.31 7.40 -2.39 -0.02 2.30 16 39 H 0.15 1.92 7.18 -2.39 -0.02 1.90 16 40 H 0.19 3.38 8.06 -2.91 -0.02 3.35 16 41 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 44 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 47 H 0.06 0.79 7.93 -2.39 -0.02 0.77 16 48 H 0.07 0.75 7.92 -2.39 -0.02 0.73 16 49 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -81.92 412.46 3.01 -78.91 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: 0.22 Total: 28.91 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 7.59 Total: 4.30 kcal Atomic # 7 Polarization: -133.35 SS G_CDS: -5.56 Total: -138.91 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.05 Total: -24.95 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.93 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -1.22 Total: 1.81 kcal Total: -81.92 3.01 -78.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699210470.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.772 kcal (2) G-P(sol) polarization free energy of solvation -81.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds