Wall clock time and date at job start Tue Mar 31 2020 22:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46959 * 2 1 4 4 C 1.52992 * 109.47425 * 119.99901 * 2 1 3 5 5 N 1.46499 * 109.47344 * 175.00002 * 4 2 1 6 6 C 1.46503 * 120.00003 * 270.00526 * 5 4 2 7 7 C 1.34770 * 120.00081 * 90.00195 * 5 4 2 8 8 O 1.21688 * 119.99810 * 2.07793 * 7 5 4 9 9 C 1.46688 * 120.00433 * 181.80629 * 7 5 4 10 10 C 1.35657 * 126.13501 * 174.19912 * 9 7 5 11 11 N 1.30939 * 114.19457 * 179.97438 * 10 9 7 12 12 C 1.29428 * 117.36259 * 0.02562 * 11 10 9 13 13 C 1.50696 * 124.80443 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.47502 * 89.96895 * 13 12 11 15 15 C 1.53008 * 109.46768 * 60.00177 * 14 13 12 16 16 C 1.53000 * 109.47385 * 179.97438 * 14 13 12 17 17 C 1.52993 * 109.47211 * 300.00209 * 14 13 12 18 18 S 1.70952 * 110.39281 * 359.75650 * 12 11 10 19 19 N 1.46506 * 109.47043 * 240.00423 * 2 1 3 20 20 C 1.36931 * 120.00156 * 84.99684 * 19 2 1 21 21 H 1.07999 * 120.00282 * 0.02562 * 20 19 2 22 22 C 1.38809 * 120.00133 * 179.97438 * 20 19 2 23 23 N 1.31621 * 119.99845 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00339 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46972 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47115 * 119.99795 * 24 22 20 27 27 H 1.48495 * 109.47354 * 239.99978 * 24 22 20 28 28 H 1.08996 * 109.46899 * 60.00295 * 1 2 3 29 29 H 1.08995 * 109.46628 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47129 * 299.99715 * 1 2 3 31 31 H 1.09007 * 109.46858 * 55.00173 * 4 2 1 32 32 H 1.09000 * 109.47710 * 295.00157 * 4 2 1 33 33 H 1.09007 * 109.47227 * 234.74471 * 6 5 4 34 34 H 1.08993 * 109.47177 * 354.74337 * 6 5 4 35 35 H 1.08997 * 109.47193 * 114.74696 * 6 5 4 36 36 H 1.07997 * 122.90084 * 359.93274 * 10 9 7 37 37 H 1.09006 * 109.47553 * 209.97077 * 13 12 11 38 38 H 1.08998 * 109.47071 * 329.96926 * 13 12 11 39 39 H 1.08996 * 109.46960 * 60.00000 * 15 14 13 40 40 H 1.08998 * 109.46737 * 180.02562 * 15 14 13 41 41 H 1.09005 * 109.46764 * 299.99892 * 15 14 13 42 42 H 1.08998 * 109.46878 * 60.00220 * 16 14 13 43 43 H 1.08998 * 109.47256 * 179.97438 * 16 14 13 44 44 H 1.08996 * 109.47467 * 300.00688 * 16 14 13 45 45 H 1.09005 * 109.47372 * 59.99465 * 17 14 13 46 46 H 1.08998 * 109.47371 * 179.97438 * 17 14 13 47 47 H 1.08998 * 109.46958 * 299.99721 * 17 14 13 48 48 H 0.96999 * 119.99841 * 264.99765 * 19 2 1 49 49 H 0.97006 * 119.99844 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1259 -1.9918 0.5610 7 6 4.2676 0.1492 1.7155 8 8 3.7484 1.0989 2.2717 9 6 5.7290 0.0634 1.6217 10 6 6.6127 1.0187 2.0046 11 7 7.8675 0.6957 1.8159 12 6 8.1116 -0.4657 1.2995 13 6 9.4882 -1.0063 1.0104 14 6 10.0054 -1.7655 2.2340 15 6 9.0588 -2.9246 2.5527 16 6 11.4028 -2.3149 1.9403 17 6 10.0714 -0.8167 3.4324 18 16 6.6516 -1.3020 0.9972 19 7 2.0184 -0.6906 -1.1963 20 6 2.1491 -0.0074 -2.3758 21 1 1.8926 1.0406 -2.4242 22 6 2.6123 -0.6616 -3.5091 23 7 2.9254 -1.9386 -3.4500 24 14 2.7899 0.2701 -5.1184 25 1 2.3750 1.6823 -4.9211 26 1 4.2069 0.2283 -5.5607 27 1 1.9298 -0.3592 -6.1523 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6055 -1.7198 1.2951 32 1 1.7518 -0.1583 2.1370 33 1 4.8185 -2.4560 1.2632 34 1 3.3560 -2.7108 0.2813 35 1 4.6690 -1.6759 -0.3297 36 1 6.3075 1.9643 2.4279 37 1 9.4412 -1.6824 0.1566 38 1 10.1625 -0.1807 0.7834 39 1 9.0117 -3.6005 1.6989 40 1 9.4269 -3.4651 3.4247 41 1 8.0630 -2.5334 2.7618 42 1 12.0773 -1.4895 1.7130 43 1 11.7714 -2.8553 2.8122 44 1 11.3554 -2.9909 1.0866 45 1 9.0756 -0.4256 3.6416 46 1 10.4394 -1.3576 4.3043 47 1 10.7457 0.0090 3.2054 48 1 2.2491 -1.6317 -1.1528 49 1 3.2494 -2.3957 -4.2419 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700802072.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:32 Heat of formation + Delta-G solvation = 9.176311 kcal Electronic energy + Delta-G solvation = -28160.529061 eV Core-core repulsion = 24442.603156 eV Total energy + Delta-G solvation = -3717.925905 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.12530 -39.33786 -37.55798 -36.29803 -34.36236 -32.20032 -31.11921 -28.98737 -28.32559 -27.56254 -27.44299 -27.05366 -25.71758 -24.11281 -23.54879 -21.42423 -19.92997 -19.58403 -18.25085 -18.11223 -17.31082 -16.40990 -16.03835 -15.74067 -15.18171 -14.95391 -14.70881 -14.60169 -14.36934 -13.83742 -13.68357 -13.42092 -13.18410 -13.13924 -12.82484 -12.72506 -12.43354 -12.29381 -12.24429 -11.99609 -11.94932 -11.84314 -11.50331 -11.41243 -11.27223 -11.11983 -11.00366 -10.92380 -10.88810 -10.73217 -10.42002 -10.06465 -9.82753 -9.66642 -9.40052 -9.25022 -8.97072 -8.81683 -8.20929 -6.98313 -5.81185 -3.07856 0.39072 1.32316 1.75263 2.60462 3.20180 3.40502 3.46972 3.47984 3.49177 4.03830 4.49483 4.54136 4.56949 4.65869 4.77854 5.08100 5.21445 5.27234 5.29698 5.38760 5.41210 5.48218 5.50935 5.51615 5.55577 5.59446 5.60660 5.65401 5.68833 5.74258 5.83681 5.84734 5.96539 6.07623 6.08483 6.13801 6.16751 6.22758 6.24093 6.27531 6.59117 6.72119 6.83446 7.09943 7.55218 7.70153 7.75800 8.34631 8.38341 9.49993 10.04958 10.41228 11.41753 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012505 B = 0.003488 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.654819 B = 8025.988224 C = 9210.159464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.153 3.847 3 H 0.052 0.948 4 C 0.112 3.888 5 N -0.587 5.587 6 C 0.073 3.927 7 C 0.595 3.405 8 O -0.538 6.538 9 C -0.288 4.288 10 C 0.111 3.889 11 N -0.479 5.479 12 C 0.027 3.973 13 C -0.038 4.038 14 C -0.062 4.062 15 C -0.153 4.153 16 C -0.139 4.139 17 C -0.139 4.139 18 S 0.209 5.791 19 N -0.720 5.720 20 C -0.230 4.230 21 H 0.068 0.932 22 C -0.013 4.013 23 N -0.935 5.935 24 Si 0.902 3.098 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.182 0.818 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.051 0.949 47 H 0.057 0.943 48 H 0.381 0.619 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.695 -4.433 13.284 18.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.042 3.958 3 H 0.070 0.930 4 C -0.011 4.011 5 N -0.318 5.318 6 C -0.072 4.072 7 C 0.382 3.618 8 O -0.417 6.417 9 C -0.413 4.413 10 C -0.047 4.047 11 N -0.194 5.194 12 C -0.247 4.247 13 C -0.079 4.079 14 C -0.064 4.064 15 C -0.211 4.211 16 C -0.197 4.197 17 C -0.197 4.197 18 S 0.468 5.532 19 N -0.363 5.363 20 C -0.361 4.361 21 H 0.086 0.914 22 C -0.208 4.208 23 N -0.584 5.584 24 Si 0.734 3.266 25 H -0.207 1.207 26 H -0.220 1.220 27 H -0.219 1.219 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.101 0.899 36 H 0.199 0.801 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.215 0.785 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.660 -4.496 13.125 18.782 hybrid contribution -0.148 1.010 -0.855 1.332 sum 12.511 -3.486 12.270 17.867 Atomic orbital electron populations 1.22358 0.98590 1.00887 1.00384 1.20669 0.92116 0.96336 0.86638 0.92977 1.21961 0.77750 1.01559 0.99831 1.47413 1.07093 1.20742 1.56514 1.21917 0.98940 0.88447 0.97888 1.16697 0.83933 0.82505 0.78696 1.90789 1.73610 1.32385 1.44948 1.25794 0.99210 1.00708 1.15545 1.22050 0.85561 0.99882 0.97207 1.66268 1.20775 1.16307 1.16015 1.27746 1.02538 0.94629 0.99774 1.20445 0.88973 1.00166 0.98293 1.20509 0.95727 0.95416 0.94767 1.22077 0.99408 0.97621 1.01953 1.21848 0.95104 1.00957 1.01769 1.21864 1.02662 0.98625 0.96509 1.84582 0.95731 1.17013 1.55850 1.42383 1.78222 1.10397 1.05252 1.19269 1.35757 0.93840 0.87228 0.91360 1.24646 1.02387 0.95983 0.97820 1.69637 1.51535 1.08533 1.28721 0.86181 0.77274 0.78938 0.84249 1.20656 1.21969 1.21918 0.92488 0.93427 0.94225 0.90587 0.89766 0.92669 0.88486 0.89881 0.80067 0.89481 0.88858 0.92115 0.92167 0.92430 0.92386 0.92292 0.92350 0.92180 0.92968 0.92382 0.78508 0.93682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.49 37.16 0.35 -2.52 16 2 C 0.15 3.06 3.20 -67.93 -0.22 2.84 16 3 H 0.05 1.17 8.08 -51.93 -0.42 0.75 16 4 C 0.11 1.87 5.03 -4.05 -0.02 1.85 16 5 N -0.59 -10.04 2.73 -183.13 -0.50 -10.54 16 6 C 0.07 1.12 7.52 59.85 0.45 1.57 16 7 C 0.59 10.87 7.65 -12.85 -0.10 10.77 16 8 O -0.54 -11.06 16.44 5.20 0.09 -10.98 16 9 C -0.29 -4.64 6.33 -37.09 -0.23 -4.88 16 10 C 0.11 1.71 11.10 -18.86 -0.21 1.50 16 11 N -0.48 -6.92 9.66 -11.51 -0.11 -7.03 16 12 C 0.03 0.34 4.93 -13.29 -0.07 0.27 16 13 C -0.04 -0.37 4.86 -27.88 -0.14 -0.50 16 14 C -0.06 -0.52 0.80 -154.51 -0.12 -0.65 16 15 C -0.15 -1.27 8.01 37.16 0.30 -0.97 16 16 C -0.14 -0.93 8.47 37.16 0.31 -0.61 16 17 C -0.14 -1.29 8.17 37.15 0.30 -0.98 16 18 S 0.21 2.73 16.17 -107.50 -1.74 0.99 16 19 N -0.72 -17.05 4.57 -53.42 -0.24 -17.29 16 20 C -0.23 -6.21 9.93 -15.06 -0.15 -6.36 16 21 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -26.55 13.06 55.49 0.72 -25.83 16 24 Si 0.90 22.20 29.55 -169.99 -5.02 17.17 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.11 7.88 -51.92 -0.41 0.71 16 32 H 0.08 1.36 7.39 -51.93 -0.38 0.98 16 33 H 0.06 0.70 5.90 -35.05 -0.21 0.49 16 34 H 0.10 1.44 7.07 -51.93 -0.37 1.08 16 35 H 0.08 1.48 6.99 -51.93 -0.36 1.11 16 36 H 0.18 2.63 8.06 -52.49 -0.42 2.21 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.55 6.02 -51.93 -0.31 0.23 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.68 6.64 -51.93 -0.34 0.33 16 46 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.38 9.17 6.14 -40.82 -0.25 8.92 16 49 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 398.49 15.07 6.01 6.01 Total: -1.00 -31.24 398.49 -8.53 -39.77 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -8.10 Total: 6.86 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 0.37 Total: 0.87 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: -0.13 Total: -60.69 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.74 Total: 0.99 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.24 -8.53 -39.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700802072.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.943 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds