Wall clock time and date at job start Tue Mar 31 2020 22:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46959 * 2 1 4 4 C 1.52992 * 109.47425 * 119.99901 * 2 1 3 5 5 N 1.46499 * 109.47344 * 175.00002 * 4 2 1 6 6 C 1.46503 * 120.00003 * 270.00526 * 5 4 2 7 7 C 1.34770 * 120.00081 * 90.00195 * 5 4 2 8 8 O 1.21688 * 119.99810 * 2.07793 * 7 5 4 9 9 C 1.46688 * 120.00433 * 181.80629 * 7 5 4 10 10 C 1.35657 * 126.13501 * 174.19912 * 9 7 5 11 11 N 1.30939 * 114.19457 * 179.97438 * 10 9 7 12 12 C 1.29428 * 117.36259 * 0.02562 * 11 10 9 13 13 C 1.50696 * 124.80443 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.47502 * 89.96895 * 13 12 11 15 15 C 1.53008 * 109.46768 * 60.00177 * 14 13 12 16 16 C 1.53000 * 109.47385 * 179.97438 * 14 13 12 17 17 C 1.52993 * 109.47211 * 300.00209 * 14 13 12 18 18 S 1.70952 * 110.39281 * 359.75650 * 12 11 10 19 19 N 1.46506 * 109.47043 * 240.00423 * 2 1 3 20 20 C 1.36931 * 120.00156 * 84.99684 * 19 2 1 21 21 H 1.07999 * 120.00282 * 0.02562 * 20 19 2 22 22 C 1.38809 * 120.00133 * 179.97438 * 20 19 2 23 23 N 1.31621 * 119.99845 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00339 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46972 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47115 * 119.99795 * 24 22 20 27 27 H 1.48495 * 109.47354 * 239.99978 * 24 22 20 28 28 H 1.08996 * 109.46899 * 60.00295 * 1 2 3 29 29 H 1.08995 * 109.46628 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47129 * 299.99715 * 1 2 3 31 31 H 1.09007 * 109.46858 * 55.00173 * 4 2 1 32 32 H 1.09000 * 109.47710 * 295.00157 * 4 2 1 33 33 H 1.09007 * 109.47227 * 234.74471 * 6 5 4 34 34 H 1.08993 * 109.47177 * 354.74337 * 6 5 4 35 35 H 1.08997 * 109.47193 * 114.74696 * 6 5 4 36 36 H 1.07997 * 122.90084 * 359.93274 * 10 9 7 37 37 H 1.09006 * 109.47553 * 209.97077 * 13 12 11 38 38 H 1.08998 * 109.47071 * 329.96926 * 13 12 11 39 39 H 1.08996 * 109.46960 * 60.00000 * 15 14 13 40 40 H 1.08998 * 109.46737 * 180.02562 * 15 14 13 41 41 H 1.09005 * 109.46764 * 299.99892 * 15 14 13 42 42 H 1.08998 * 109.46878 * 60.00220 * 16 14 13 43 43 H 1.08998 * 109.47256 * 179.97438 * 16 14 13 44 44 H 1.08996 * 109.47467 * 300.00688 * 16 14 13 45 45 H 1.09005 * 109.47372 * 59.99465 * 17 14 13 46 46 H 1.08998 * 109.47371 * 179.97438 * 17 14 13 47 47 H 1.08998 * 109.46958 * 299.99721 * 17 14 13 48 48 H 0.96999 * 119.99841 * 264.99765 * 19 2 1 49 49 H 0.97006 * 119.99844 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1259 -1.9918 0.5610 7 6 4.2676 0.1492 1.7155 8 8 3.7484 1.0989 2.2717 9 6 5.7290 0.0634 1.6217 10 6 6.6127 1.0187 2.0046 11 7 7.8675 0.6957 1.8159 12 6 8.1116 -0.4657 1.2995 13 6 9.4882 -1.0063 1.0104 14 6 10.0054 -1.7655 2.2340 15 6 9.0588 -2.9246 2.5527 16 6 11.4028 -2.3149 1.9403 17 6 10.0714 -0.8167 3.4324 18 16 6.6516 -1.3020 0.9972 19 7 2.0184 -0.6906 -1.1963 20 6 2.1491 -0.0074 -2.3758 21 1 1.8926 1.0406 -2.4242 22 6 2.6123 -0.6616 -3.5091 23 7 2.9254 -1.9386 -3.4500 24 14 2.7899 0.2701 -5.1184 25 1 2.3750 1.6823 -4.9211 26 1 4.2069 0.2283 -5.5607 27 1 1.9298 -0.3592 -6.1523 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6055 -1.7198 1.2951 32 1 1.7518 -0.1583 2.1370 33 1 4.8185 -2.4560 1.2632 34 1 3.3560 -2.7108 0.2813 35 1 4.6690 -1.6759 -0.3297 36 1 6.3075 1.9643 2.4279 37 1 9.4412 -1.6824 0.1566 38 1 10.1625 -0.1807 0.7834 39 1 9.0117 -3.6005 1.6989 40 1 9.4269 -3.4651 3.4247 41 1 8.0630 -2.5334 2.7618 42 1 12.0773 -1.4895 1.7130 43 1 11.7714 -2.8553 2.8122 44 1 11.3554 -2.9909 1.0866 45 1 9.0756 -0.4256 3.6416 46 1 10.4394 -1.3576 4.3043 47 1 10.7457 0.0090 3.2054 48 1 2.2491 -1.6317 -1.1528 49 1 3.2494 -2.3957 -4.2419 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700802072.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:32 Heat of formation + Delta-G solvation = -9.013118 kcal Electronic energy + Delta-G solvation = -28161.317814 eV Core-core repulsion = 24442.603156 eV Total energy + Delta-G solvation = -3718.714658 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.35262 -40.56060 -38.38112 -37.84990 -35.96440 -34.04514 -32.24225 -30.72902 -29.44493 -28.41943 -28.16869 -28.09621 -27.01978 -25.73045 -24.97617 -22.75976 -21.45139 -20.48636 -19.45008 -19.31074 -19.13358 -17.68808 -17.35918 -16.98344 -16.55622 -16.18374 -16.04675 -15.62057 -15.43837 -15.27920 -15.14254 -14.72221 -14.46085 -14.13313 -13.97033 -13.91846 -13.86833 -13.57973 -13.31022 -13.13733 -12.89120 -12.84240 -12.78708 -12.63660 -12.54259 -12.51358 -12.43862 -12.19033 -11.91819 -11.85465 -11.70087 -11.65429 -11.58559 -11.20535 -10.96919 -10.51536 -10.37376 -10.01806 -9.53633 -8.94738 -7.92543 -5.17384 -0.75679 0.20852 0.63998 1.39012 1.44022 1.46597 1.54065 1.88829 2.16119 2.55890 3.05314 3.41179 3.48691 3.78698 3.84051 3.89959 3.93196 4.03407 4.14293 4.19360 4.27646 4.32812 4.43172 4.52883 4.60407 4.64827 4.69948 4.75759 4.80880 4.84075 4.84785 4.90583 4.94503 5.02545 5.07315 5.07917 5.11052 5.23689 5.25507 5.31823 5.35694 5.46180 5.51445 5.53339 5.61028 6.20016 6.31348 6.63096 6.95826 7.38941 8.10281 8.40079 9.29932 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012505 B = 0.003488 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.654819 B = 8025.988224 C = 9210.159464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.151 3.849 3 H 0.020 0.980 4 C 0.116 3.884 5 N -0.590 5.590 6 C 0.076 3.924 7 C 0.589 3.411 8 O -0.572 6.572 9 C -0.324 4.324 10 C 0.112 3.888 11 N -0.495 5.495 12 C 0.037 3.963 13 C -0.043 4.043 14 C -0.058 4.058 15 C -0.155 4.155 16 C -0.136 4.136 17 C -0.138 4.138 18 S 0.243 5.757 19 N -0.724 5.724 20 C -0.233 4.233 21 H 0.057 0.943 22 C -0.059 4.059 23 N -0.955 5.955 24 Si 0.954 3.046 25 H -0.280 1.280 26 H -0.294 1.294 27 H -0.291 1.291 28 H 0.035 0.965 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.181 0.819 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.041 0.959 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.035 0.965 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.379 0.621 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.832 -5.847 13.533 20.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.042 3.958 3 H 0.038 0.962 4 C -0.006 4.006 5 N -0.319 5.319 6 C -0.068 4.068 7 C 0.377 3.623 8 O -0.454 6.454 9 C -0.448 4.448 10 C -0.047 4.047 11 N -0.210 5.210 12 C -0.236 4.236 13 C -0.083 4.083 14 C -0.060 4.060 15 C -0.213 4.213 16 C -0.193 4.193 17 C -0.195 4.195 18 S 0.503 5.497 19 N -0.366 5.366 20 C -0.366 4.366 21 H 0.075 0.925 22 C -0.253 4.253 23 N -0.606 5.606 24 Si 0.785 3.215 25 H -0.205 1.205 26 H -0.221 1.221 27 H -0.219 1.219 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.122 0.878 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.077 0.923 36 H 0.198 0.802 37 H 0.123 0.877 38 H 0.116 0.884 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.060 0.940 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.054 0.946 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.213 0.787 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 13.782 -5.923 13.384 20.104 hybrid contribution -0.434 1.469 -0.885 1.768 sum 13.349 -4.454 12.500 18.822 Atomic orbital electron populations 1.22198 0.96484 1.01711 1.00770 1.20785 0.93533 0.94714 0.86808 0.96186 1.21941 0.77789 1.02746 0.98159 1.47520 1.07272 1.20986 1.56099 1.21947 0.99452 0.87882 0.97548 1.17025 0.84907 0.82157 0.78200 1.90749 1.74513 1.33601 1.46520 1.25695 0.98499 1.02748 1.17884 1.22153 0.86026 0.99882 0.96679 1.66337 1.20134 1.17335 1.17190 1.28346 1.03749 0.93891 0.97572 1.20705 0.87150 1.00815 0.99670 1.20509 0.96908 0.95039 0.93538 1.22104 0.98487 0.97750 1.02928 1.21820 0.93656 1.01269 1.02549 1.21849 1.01184 0.98947 0.97530 1.84297 0.95005 1.15424 1.54977 1.42409 1.78482 1.10257 1.05423 1.19413 1.34975 0.93557 0.88623 0.92499 1.25207 1.03044 0.96831 1.00179 1.69730 1.52440 1.09294 1.29086 0.85359 0.76860 0.78003 0.81263 1.20475 1.22089 1.21863 0.94558 0.92311 0.91379 0.87818 0.89025 0.89884 0.87832 0.92329 0.80216 0.87699 0.88392 0.91065 0.91140 0.93991 0.92044 0.91481 0.91420 0.94562 0.91856 0.92519 0.78706 0.93977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 9.49 71.98 0.68 -4.54 16 2 C 0.15 6.02 3.20 44.99 0.14 6.16 16 3 H 0.02 0.92 8.08 -2.39 -0.02 0.90 16 4 C 0.12 3.79 5.03 86.38 0.43 4.22 16 5 N -0.59 -20.00 2.73 -851.51 -2.32 -22.32 16 6 C 0.08 2.27 7.52 127.77 0.96 3.23 16 7 C 0.59 21.87 7.65 86.45 0.66 22.53 16 8 O -0.57 -24.19 16.44 -4.31 -0.07 -24.26 16 9 C -0.32 -10.56 6.33 23.88 0.15 -10.41 16 10 C 0.11 3.52 11.10 84.23 0.93 4.45 16 11 N -0.50 -14.24 9.66 -190.32 -1.84 -16.08 16 12 C 0.04 0.91 4.93 88.46 0.44 1.34 16 13 C -0.04 -0.74 4.86 29.85 0.15 -0.60 16 14 C -0.06 -0.84 0.80 -52.18 -0.04 -0.88 16 15 C -0.16 -2.21 8.01 71.98 0.58 -1.64 16 16 C -0.14 -1.41 8.47 71.98 0.61 -0.80 16 17 C -0.14 -2.36 8.17 71.98 0.59 -1.77 16 18 S 0.24 6.14 16.17 -56.49 -0.91 5.23 16 19 N -0.72 -34.31 4.57 -322.94 -1.47 -35.78 16 20 C -0.23 -12.74 9.93 84.03 0.83 -11.90 16 21 H 0.06 3.18 7.83 -2.91 -0.02 3.15 16 22 C -0.06 -3.28 5.50 84.86 0.47 -2.81 16 23 N -0.95 -54.07 13.06 21.65 0.28 -53.79 16 24 Si 0.95 45.70 29.55 68.60 2.03 47.73 16 25 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 26 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 27 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.10 2.81 7.88 -2.38 -0.02 2.79 16 32 H 0.09 2.88 7.39 -2.39 -0.02 2.86 16 33 H 0.08 1.98 5.90 -13.11 -0.08 1.90 16 34 H 0.10 2.95 7.07 -2.39 -0.02 2.93 16 35 H 0.06 2.07 6.99 -2.39 -0.02 2.05 16 36 H 0.18 5.49 8.06 -2.91 -0.02 5.47 16 37 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.04 0.73 6.02 -2.38 -0.01 0.71 16 42 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 44 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.04 0.79 6.64 -2.38 -0.02 0.78 16 46 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.38 18.15 6.14 -92.71 -0.57 17.58 16 49 H 0.25 13.87 8.31 -92.70 -0.77 13.10 16 Total: -1.00 -67.38 398.49 3.58 -63.80 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 0.30 Total: 28.88 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 7.59 Total: 6.59 kcal Atomic # 7 Polarization: -122.62 SS G_CDS: -5.35 Total: -127.97 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.07 Total: -24.26 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Atomic # 16 Polarization: 6.14 SS G_CDS: -0.91 Total: 5.23 kcal Total: -67.38 3.58 -63.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700802072.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.791 kcal (2) G-P(sol) polarization free energy of solvation -67.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds