Wall clock time and date at job start Tue Mar 31 2020 23:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47231 * 2 1 4 4 C 1.36931 * 119.99996 * 275.31213 * 3 2 1 5 5 H 1.08001 * 120.00384 * 37.58127 * 4 3 2 6 6 C 1.38817 * 120.00107 * 217.57624 * 4 3 2 7 7 N 1.31620 * 119.99660 * 21.42979 * 6 4 3 8 8 Si 1.86794 * 120.00363 * 201.42809 * 6 4 3 9 9 H 1.48506 * 109.47215 * 89.99913 * 8 6 4 10 10 H 1.48499 * 109.47386 * 210.00236 * 8 6 4 11 11 H 1.48501 * 109.46976 * 330.00211 * 8 6 4 12 12 C 1.46501 * 119.99880 * 95.31355 * 3 2 1 13 13 C 1.53003 * 109.47174 * 270.00315 * 12 3 2 14 14 N 1.46501 * 109.47174 * 180.02562 * 13 12 3 15 15 C 1.34777 * 119.99903 * 179.97438 * 14 13 12 16 16 O 1.21690 * 119.99638 * 0.02562 * 15 14 13 17 17 C 1.46682 * 120.00066 * 179.97438 * 15 14 13 18 18 S 1.76214 * 126.12839 * 359.70309 * 17 15 14 19 19 C 1.70955 * 90.31154 * 179.91830 * 18 17 15 20 20 C 1.50705 * 124.80317 * 180.10600 * 19 18 17 21 21 N 1.29431 * 110.39135 * 0.34104 * 19 18 17 22 22 C 1.30939 * 117.36344 * 359.73320 * 21 19 18 23 23 C 1.50700 * 122.90464 * 179.97438 * 22 21 19 24 24 C 1.52998 * 109.46751 * 269.99397 * 23 22 21 25 25 C 1.53001 * 109.47081 * 65.00031 * 24 23 22 26 26 C 1.53000 * 109.46861 * 184.99830 * 24 23 22 27 27 H 1.09003 * 109.46992 * 299.99740 * 1 2 3 28 28 H 1.08998 * 109.47438 * 59.99190 * 1 2 3 29 29 H 1.09000 * 109.47438 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46992 * 240.00260 * 2 1 3 31 31 H 1.09005 * 109.47394 * 120.00400 * 2 1 3 32 32 H 0.97003 * 119.99920 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.47520 * 149.99791 * 12 3 2 34 34 H 1.09006 * 109.47061 * 30.00009 * 12 3 2 35 35 H 1.08997 * 109.47325 * 59.99357 * 13 12 3 36 36 H 1.09003 * 109.46440 * 299.99546 * 13 12 3 37 37 H 0.96997 * 119.99785 * 0.02562 * 14 13 12 38 38 H 1.09000 * 109.46826 * 270.27072 * 20 19 18 39 39 H 1.08996 * 109.46719 * 30.27234 * 20 19 18 40 40 H 1.08999 * 109.46819 * 150.27167 * 20 19 18 41 41 H 1.08998 * 109.47369 * 29.99378 * 23 22 21 42 42 H 1.09001 * 109.47388 * 149.99724 * 23 22 21 43 43 H 1.08994 * 109.47649 * 305.00088 * 24 23 22 44 44 H 1.09001 * 109.47368 * 179.97438 * 25 24 23 45 45 H 1.08994 * 109.47369 * 300.00110 * 25 24 23 46 46 H 1.09004 * 109.47228 * 59.99941 * 25 24 23 47 47 H 1.09002 * 109.47400 * 60.00095 * 26 24 23 48 48 H 1.09001 * 109.47063 * 180.02562 * 26 24 23 49 49 H 1.09004 * 109.47316 * 299.99977 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0633 -1.1808 5 1 1.4104 1.9279 -1.9627 6 6 3.2111 2.9290 -1.3728 7 7 4.3026 2.7980 -0.6491 8 14 3.0993 4.2796 -2.6584 9 1 2.5376 5.5070 -2.0393 10 1 4.4549 4.5696 -3.1908 11 1 2.2165 3.8359 -3.7670 12 6 2.3733 2.0326 1.2633 13 6 1.1427 2.7382 1.8367 14 7 1.4977 3.3901 3.0997 15 6 0.5654 4.0776 3.7886 16 8 -0.5714 4.1564 3.3617 17 6 0.9208 4.7299 5.0534 18 16 2.5066 4.7128 5.8216 19 6 1.9053 5.6680 7.1055 20 6 2.7194 6.1348 8.2848 21 7 0.6508 5.9295 6.9239 22 6 0.0861 5.4496 5.8444 23 6 -1.3656 5.6769 5.5097 24 6 -2.2102 4.5537 6.1146 25 6 -2.1312 4.6216 7.6411 26 6 -3.6657 4.7149 5.6715 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 5.0492 3.4027 -0.7835 33 1 3.1617 2.7640 1.0860 34 1 2.7256 1.2832 1.9721 35 1 0.3542 2.0068 2.0140 36 1 0.7904 3.4876 1.1279 37 1 2.4040 3.3275 3.4397 38 1 2.6634 5.3929 9.0813 39 1 3.7581 6.2640 7.9808 40 1 2.3252 7.0851 8.6450 41 1 -1.6874 6.6343 5.9194 42 1 -1.4922 5.6839 4.4271 43 1 -1.8313 3.5902 5.7738 44 1 -2.7333 3.8217 8.0721 45 1 -1.0943 4.5068 7.9567 46 1 -2.5102 5.5851 7.9820 47 1 -3.7220 4.6665 4.5841 48 1 -4.2676 3.9150 6.1028 49 1 -4.0447 5.6784 6.0125 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714586175.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:35 Heat of formation + Delta-G solvation = 4.269055 kcal Electronic energy + Delta-G solvation = -27683.527522 eV Core-core repulsion = 23965.388822 eV Total energy + Delta-G solvation = -3718.138700 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.52473 -38.91156 -36.39594 -36.07085 -34.14569 -32.53232 -31.91362 -29.98960 -29.02108 -28.11021 -27.16269 -26.87006 -24.29839 -23.25728 -22.36611 -21.08489 -20.40862 -20.18267 -19.26659 -18.05826 -16.94596 -16.41858 -15.65337 -15.50141 -15.10767 -14.92711 -14.63746 -14.52167 -13.97702 -13.94463 -13.85611 -13.63586 -13.43977 -12.93416 -12.86317 -12.64857 -12.53571 -12.41434 -12.26484 -12.09694 -11.79149 -11.62579 -11.51963 -11.14920 -10.95173 -10.89207 -10.80320 -10.68819 -10.59849 -10.52360 -10.10939 -9.98736 -9.92004 -9.84239 -9.57619 -9.54325 -8.85272 -8.60507 -8.48636 -6.66344 -5.86762 -3.45699 0.17940 1.06802 1.48061 2.40015 3.32325 3.33542 3.41388 3.41851 3.44768 3.83503 4.43998 4.64273 4.85323 4.93084 4.97291 5.01217 5.09927 5.18878 5.23390 5.25131 5.50374 5.51380 5.60849 5.70692 5.73311 5.78684 5.87754 5.94854 5.95942 6.05993 6.07884 6.12351 6.29634 6.32581 6.36204 6.39221 6.39896 6.46917 6.65717 6.77679 6.89119 6.96086 7.13929 7.47952 7.52433 7.77617 7.79094 8.40343 8.45460 9.11205 9.73071 10.31081 11.13405 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011668 B = 0.003161 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.240068 B = 8854.525057 C = 9885.973193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.579 5.579 4 C -0.262 4.262 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.285 1.285 10 H -0.290 1.290 11 H -0.276 1.276 12 C 0.137 3.863 13 C 0.098 3.902 14 N -0.713 5.713 15 C 0.588 3.412 16 O -0.525 6.525 17 C -0.289 4.289 18 S 0.158 5.842 19 C 0.053 3.947 20 C -0.079 4.079 21 N -0.473 5.473 22 C 0.150 3.850 23 C -0.052 4.052 24 C -0.082 4.082 25 C -0.143 4.143 26 C -0.143 4.143 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.046 0.954 31 H 0.034 0.966 32 H 0.255 0.745 33 H 0.099 0.901 34 H 0.029 0.971 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.394 0.606 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.107 0.893 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.060 0.940 48 H 0.053 0.947 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.667 4.235 18.812 19.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.391 4.391 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.201 1.201 12 C 0.009 3.991 13 C -0.027 4.027 14 N -0.363 5.363 15 C 0.372 3.628 16 O -0.404 6.404 17 C -0.413 4.413 18 S 0.415 5.585 19 C -0.222 4.222 20 C -0.139 4.139 21 N -0.188 5.188 22 C 0.012 3.988 23 C -0.091 4.091 24 C -0.101 4.101 25 C -0.201 4.201 26 C -0.200 4.200 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.116 0.884 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.227 0.773 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.125 0.875 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.072 0.928 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.508 4.192 18.608 19.599 hybrid contribution -0.339 0.914 -0.623 1.157 sum -4.847 5.106 17.985 19.314 Atomic orbital electron populations 1.22387 0.99875 0.99112 1.01400 1.20885 0.91781 0.86923 0.98920 1.43603 1.76037 1.08296 1.02018 1.19039 1.04818 1.21306 0.93969 0.91995 1.25186 0.94131 1.01180 0.98128 1.69994 1.03152 1.37230 1.42534 0.86389 0.76973 0.82567 0.81482 1.21208 1.21667 1.20106 1.21058 0.94494 0.96985 0.86514 1.22548 1.01332 0.96605 0.82179 1.46074 1.12515 1.52894 1.24819 1.16719 0.85496 0.78681 0.81863 1.90770 1.19638 1.61062 1.68959 1.25654 0.97287 1.13854 1.04462 1.83971 1.11153 1.47664 1.15702 1.27345 0.93883 0.99805 1.01193 1.20499 0.97845 1.02986 0.92598 1.66089 1.08518 1.23703 1.20498 1.20571 0.97952 0.92529 0.87703 1.20579 0.85755 0.99152 1.03631 1.20941 0.95352 0.98634 0.95181 1.21855 1.01619 1.01274 0.95333 1.21783 0.95143 1.01272 1.01828 0.93680 0.93081 0.94430 0.93526 0.94739 0.93493 0.88374 0.95282 0.92624 0.91416 0.77260 0.89305 0.89802 0.89049 0.90564 0.87525 0.91074 0.93261 0.92753 0.92717 0.92062 0.92805 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 10.21 37.16 0.38 -2.71 16 2 C 0.14 2.92 6.44 -4.04 -0.03 2.90 16 3 N -0.58 -13.92 2.43 -173.23 -0.42 -14.34 16 4 C -0.26 -6.96 9.45 -15.06 -0.14 -7.11 16 5 H 0.06 1.66 7.92 -52.49 -0.42 1.25 16 6 C 0.01 0.38 4.95 -17.43 -0.09 0.30 16 7 N -0.89 -24.50 11.47 55.49 0.64 -23.87 16 8 Si 0.90 21.29 29.60 -169.99 -5.03 16.26 16 9 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.14 3.02 5.45 -4.04 -0.02 3.00 16 13 C 0.10 1.98 6.00 -4.04 -0.02 1.96 16 14 N -0.71 -12.35 5.55 -61.62 -0.34 -12.69 16 15 C 0.59 10.27 7.78 -12.85 -0.10 10.17 16 16 O -0.53 -10.38 14.27 5.20 0.07 -10.30 16 17 C -0.29 -4.27 6.48 -37.10 -0.24 -4.51 16 18 S 0.16 1.79 22.31 -107.50 -2.40 -0.61 16 19 C 0.05 0.57 7.39 -13.29 -0.10 0.47 16 20 C -0.08 -0.51 10.46 36.01 0.38 -0.14 16 21 N -0.47 -6.11 9.64 -7.70 -0.07 -6.18 16 22 C 0.15 2.13 5.32 -83.89 -0.45 1.68 16 23 C -0.05 -0.70 4.50 -27.88 -0.13 -0.82 16 24 C -0.08 -1.02 2.91 -90.62 -0.26 -1.28 16 25 C -0.14 -1.58 8.97 37.16 0.33 -1.25 16 26 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 27 H 0.04 0.83 6.64 -51.93 -0.34 0.49 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 31 H 0.03 0.66 7.83 -51.93 -0.41 0.26 16 32 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 33 H 0.10 2.43 5.52 -51.93 -0.29 2.15 16 34 H 0.03 0.60 7.86 -51.93 -0.41 0.19 16 35 H 0.06 1.13 6.64 -51.93 -0.34 0.79 16 36 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.39 6.05 7.66 -40.82 -0.31 5.74 16 38 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.11 1.64 6.01 -51.93 -0.31 1.33 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.05 0.65 6.75 -51.93 -0.35 0.30 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 407.15 15.07 6.14 6.14 Total: -1.00 -30.04 407.15 -9.80 -39.83 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -8.23 Total: 4.32 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -0.14 Total: 1.44 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -0.20 Total: -57.07 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.07 Total: -10.30 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.40 Total: -0.61 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.04 -9.80 -39.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714586175.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.102 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds