Wall clock time and date at job start Tue Mar 31 2020 23:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47231 * 2 1 4 4 C 1.36931 * 119.99996 * 275.31213 * 3 2 1 5 5 H 1.08001 * 120.00384 * 37.58127 * 4 3 2 6 6 C 1.38817 * 120.00107 * 217.57624 * 4 3 2 7 7 N 1.31620 * 119.99660 * 21.42979 * 6 4 3 8 8 Si 1.86794 * 120.00363 * 201.42809 * 6 4 3 9 9 H 1.48506 * 109.47215 * 89.99913 * 8 6 4 10 10 H 1.48499 * 109.47386 * 210.00236 * 8 6 4 11 11 H 1.48501 * 109.46976 * 330.00211 * 8 6 4 12 12 C 1.46501 * 119.99880 * 95.31355 * 3 2 1 13 13 C 1.53003 * 109.47174 * 270.00315 * 12 3 2 14 14 N 1.46501 * 109.47174 * 180.02562 * 13 12 3 15 15 C 1.34777 * 119.99903 * 179.97438 * 14 13 12 16 16 O 1.21690 * 119.99638 * 0.02562 * 15 14 13 17 17 C 1.46682 * 120.00066 * 179.97438 * 15 14 13 18 18 S 1.76214 * 126.12839 * 359.70309 * 17 15 14 19 19 C 1.70955 * 90.31154 * 179.91830 * 18 17 15 20 20 C 1.50705 * 124.80317 * 180.10600 * 19 18 17 21 21 N 1.29431 * 110.39135 * 0.34104 * 19 18 17 22 22 C 1.30939 * 117.36344 * 359.73320 * 21 19 18 23 23 C 1.50700 * 122.90464 * 179.97438 * 22 21 19 24 24 C 1.52998 * 109.46751 * 269.99397 * 23 22 21 25 25 C 1.53001 * 109.47081 * 65.00031 * 24 23 22 26 26 C 1.53000 * 109.46861 * 184.99830 * 24 23 22 27 27 H 1.09003 * 109.46992 * 299.99740 * 1 2 3 28 28 H 1.08998 * 109.47438 * 59.99190 * 1 2 3 29 29 H 1.09000 * 109.47438 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46992 * 240.00260 * 2 1 3 31 31 H 1.09005 * 109.47394 * 120.00400 * 2 1 3 32 32 H 0.97003 * 119.99920 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.47520 * 149.99791 * 12 3 2 34 34 H 1.09006 * 109.47061 * 30.00009 * 12 3 2 35 35 H 1.08997 * 109.47325 * 59.99357 * 13 12 3 36 36 H 1.09003 * 109.46440 * 299.99546 * 13 12 3 37 37 H 0.96997 * 119.99785 * 0.02562 * 14 13 12 38 38 H 1.09000 * 109.46826 * 270.27072 * 20 19 18 39 39 H 1.08996 * 109.46719 * 30.27234 * 20 19 18 40 40 H 1.08999 * 109.46819 * 150.27167 * 20 19 18 41 41 H 1.08998 * 109.47369 * 29.99378 * 23 22 21 42 42 H 1.09001 * 109.47388 * 149.99724 * 23 22 21 43 43 H 1.08994 * 109.47649 * 305.00088 * 24 23 22 44 44 H 1.09001 * 109.47368 * 179.97438 * 25 24 23 45 45 H 1.08994 * 109.47369 * 300.00110 * 25 24 23 46 46 H 1.09004 * 109.47228 * 59.99941 * 25 24 23 47 47 H 1.09002 * 109.47400 * 60.00095 * 26 24 23 48 48 H 1.09001 * 109.47063 * 180.02562 * 26 24 23 49 49 H 1.09004 * 109.47316 * 299.99977 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0633 -1.1808 5 1 1.4104 1.9279 -1.9627 6 6 3.2111 2.9290 -1.3728 7 7 4.3026 2.7980 -0.6491 8 14 3.0993 4.2796 -2.6584 9 1 2.5376 5.5070 -2.0393 10 1 4.4549 4.5696 -3.1908 11 1 2.2165 3.8359 -3.7670 12 6 2.3733 2.0326 1.2633 13 6 1.1427 2.7382 1.8367 14 7 1.4977 3.3901 3.0997 15 6 0.5654 4.0776 3.7886 16 8 -0.5714 4.1564 3.3617 17 6 0.9208 4.7299 5.0534 18 16 2.5066 4.7128 5.8216 19 6 1.9053 5.6680 7.1055 20 6 2.7194 6.1348 8.2848 21 7 0.6508 5.9295 6.9239 22 6 0.0861 5.4496 5.8444 23 6 -1.3656 5.6769 5.5097 24 6 -2.2102 4.5537 6.1146 25 6 -2.1312 4.6216 7.6411 26 6 -3.6657 4.7149 5.6715 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 5.0492 3.4027 -0.7835 33 1 3.1617 2.7640 1.0860 34 1 2.7256 1.2832 1.9721 35 1 0.3542 2.0068 2.0140 36 1 0.7904 3.4876 1.1279 37 1 2.4040 3.3275 3.4397 38 1 2.6634 5.3929 9.0813 39 1 3.7581 6.2640 7.9808 40 1 2.3252 7.0851 8.6450 41 1 -1.6874 6.6343 5.9194 42 1 -1.4922 5.6839 4.4271 43 1 -1.8313 3.5902 5.7738 44 1 -2.7333 3.8217 8.0721 45 1 -1.0943 4.5068 7.9567 46 1 -2.5102 5.5851 7.9820 47 1 -3.7220 4.6665 4.5841 48 1 -4.2676 3.9150 6.1028 49 1 -4.0447 5.6784 6.0125 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714586175.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:34 Heat of formation + Delta-G solvation = -12.823778 kcal Electronic energy + Delta-G solvation = -27684.268723 eV Core-core repulsion = 23965.388822 eV Total energy + Delta-G solvation = -3718.879901 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.61819 -40.23824 -38.12266 -37.09104 -35.69840 -33.85081 -33.41159 -31.53081 -30.14878 -29.41796 -28.32678 -27.98414 -26.14154 -24.19502 -23.79733 -22.51577 -22.15396 -21.19364 -20.52727 -19.10197 -18.62725 -17.83237 -17.06816 -16.87153 -16.70778 -16.09752 -15.95386 -15.63599 -15.53566 -15.37038 -15.11701 -14.79953 -14.42940 -14.39711 -14.12485 -13.85381 -13.82851 -13.35176 -13.26891 -13.23579 -13.11328 -13.03923 -12.74769 -12.66283 -12.57973 -12.39655 -12.31936 -12.04675 -11.89396 -11.85705 -11.71990 -11.59435 -11.51705 -11.13050 -10.74914 -10.60765 -10.56066 -10.14105 -9.73628 -8.62373 -7.87930 -5.50815 -0.82941 0.11614 0.50830 1.33997 1.42458 1.46862 1.53310 2.01155 2.06243 2.48564 2.95583 3.20018 3.63151 3.77778 3.82122 3.91636 3.97418 4.11638 4.26208 4.28265 4.40023 4.45328 4.55399 4.66819 4.69750 4.70421 4.71324 4.79765 4.80749 4.82376 4.83360 4.96909 4.98598 5.07157 5.09599 5.15642 5.18175 5.25954 5.27911 5.35472 5.41604 5.44184 5.55427 5.62964 5.71254 6.34928 6.44809 6.57454 7.03177 7.13553 7.80200 8.32763 9.08207 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011668 B = 0.003161 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.240068 B = 8854.525057 C = 9885.973193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 N -0.596 5.596 4 C -0.271 4.271 5 H 0.053 0.947 6 C -0.027 4.027 7 N -0.910 5.910 8 Si 0.950 3.050 9 H -0.290 1.290 10 H -0.288 1.288 11 H -0.271 1.271 12 C 0.145 3.855 13 C 0.122 3.878 14 N -0.710 5.710 15 C 0.588 3.412 16 O -0.557 6.557 17 C -0.332 4.332 18 S 0.192 5.808 19 C 0.070 3.930 20 C -0.082 4.082 21 N -0.491 5.491 22 C 0.156 3.844 23 C -0.052 4.052 24 C -0.079 4.079 25 C -0.135 4.135 26 C -0.139 4.139 27 H 0.040 0.960 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.254 0.746 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.054 0.946 36 H 0.034 0.966 37 H 0.404 0.596 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.045 0.955 44 H 0.060 0.940 45 H 0.043 0.957 46 H 0.064 0.936 47 H 0.044 0.956 48 H 0.065 0.935 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.424 4.587 21.115 22.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 N -0.318 5.318 4 C -0.401 4.401 5 H 0.071 0.929 6 C -0.225 4.225 7 N -0.553 5.553 8 Si 0.778 3.222 9 H -0.218 1.218 10 H -0.214 1.214 11 H -0.195 1.195 12 C 0.018 3.982 13 C -0.004 4.004 14 N -0.361 5.361 15 C 0.375 3.625 16 O -0.438 6.438 17 C -0.455 4.455 18 S 0.450 5.550 19 C -0.205 4.205 20 C -0.142 4.142 21 N -0.207 5.207 22 C 0.017 3.983 23 C -0.091 4.091 24 C -0.098 4.098 25 C -0.192 4.192 26 C -0.197 4.197 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.239 0.761 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.062 0.938 46 H 0.083 0.917 47 H 0.063 0.937 48 H 0.084 0.916 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.248 4.526 20.924 21.826 hybrid contribution -0.382 0.802 -1.223 1.512 sum -4.631 5.329 19.702 20.928 Atomic orbital electron populations 1.22215 0.97931 1.00884 1.00402 1.21019 0.93197 0.85338 0.99317 1.43837 1.76377 1.09661 1.01877 1.19177 1.04427 1.21821 0.94722 0.92925 1.25748 0.93994 1.02760 0.99999 1.70080 1.03524 1.37847 1.43831 0.85553 0.76844 0.80062 0.79731 1.21756 1.21437 1.19540 1.20912 0.94266 0.96752 0.86309 1.22016 1.00243 0.95451 0.82687 1.45889 1.13212 1.53067 1.23949 1.17041 0.84879 0.78077 0.82531 1.90746 1.20860 1.62092 1.70074 1.25373 0.99974 1.15922 1.04268 1.83796 1.08536 1.47502 1.15156 1.28219 0.93442 0.97453 1.01383 1.20791 0.98249 1.03822 0.91304 1.66184 1.09552 1.24775 1.20182 1.20707 0.98091 0.91634 0.87822 1.20546 0.86220 1.00168 1.02210 1.20894 0.95832 0.96811 0.96256 1.21770 1.01249 1.02286 0.93890 1.21754 0.94418 1.02631 1.00850 0.94065 0.94623 0.91218 0.94360 0.93028 0.93668 0.90879 0.93729 0.92765 0.94719 0.76066 0.87163 0.87566 0.88127 0.89406 0.90002 0.93641 0.92082 0.93770 0.91713 0.93678 0.91604 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.56 10.21 71.98 0.73 -4.82 16 2 C 0.14 5.59 6.44 86.38 0.56 6.15 16 3 N -0.60 -28.98 2.43 -701.98 -1.71 -30.69 16 4 C -0.27 -14.68 9.45 84.04 0.79 -13.88 16 5 H 0.05 2.89 7.92 -2.91 -0.02 2.87 16 6 C -0.03 -1.45 4.95 84.86 0.42 -1.03 16 7 N -0.91 -50.89 11.47 21.65 0.25 -50.64 16 8 Si 0.95 44.37 29.60 68.60 2.03 46.40 16 9 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 10 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 12 C 0.14 6.48 5.45 86.38 0.47 6.95 16 13 C 0.12 5.07 6.00 86.38 0.52 5.58 16 14 N -0.71 -25.20 5.55 -467.07 -2.59 -27.79 16 15 C 0.59 21.23 7.78 86.45 0.67 21.90 16 16 O -0.56 -23.14 14.27 -4.32 -0.06 -23.20 16 17 C -0.33 -9.86 6.48 23.88 0.15 -9.71 16 18 S 0.19 4.05 22.31 -56.49 -1.26 2.79 16 19 C 0.07 1.32 7.39 88.46 0.65 1.98 16 20 C -0.08 -0.75 10.46 71.24 0.75 -0.01 16 21 N -0.49 -11.92 9.64 -178.28 -1.72 -13.64 16 22 C 0.16 4.40 5.32 42.09 0.22 4.62 16 23 C -0.05 -1.42 4.50 29.85 0.13 -1.28 16 24 C -0.08 -1.95 2.91 -10.79 -0.03 -1.98 16 25 C -0.13 -2.78 8.97 71.98 0.65 -2.14 16 26 C -0.14 -2.99 9.19 71.98 0.66 -2.32 16 27 H 0.04 1.49 6.64 -2.39 -0.02 1.48 16 28 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.04 1.61 8.08 -2.39 -0.02 1.59 16 31 H 0.05 1.92 7.83 -2.38 -0.02 1.90 16 32 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 33 H 0.07 3.71 5.52 -2.39 -0.01 3.69 16 34 H 0.04 1.82 7.86 -2.38 -0.02 1.81 16 35 H 0.05 2.26 6.64 -2.39 -0.02 2.24 16 36 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.40 12.51 7.66 -92.71 -0.71 11.80 16 38 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.08 2.66 6.01 -2.39 -0.01 2.65 16 43 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.04 1.00 6.75 -2.39 -0.02 0.98 16 46 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 47 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 49 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -66.23 407.15 2.52 -63.70 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.23 Total: 23.04 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 7.35 Total: 10.01 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -5.77 Total: -122.75 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.06 Total: -23.20 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -1.26 Total: 2.79 kcal Total: -66.23 2.52 -63.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714586175.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.880 kcal (2) G-P(sol) polarization free energy of solvation -66.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds