Wall clock time and date at job start Tue Mar 31 2020 22:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46898 * 2 1 4 4 C 1.53004 * 109.47522 * 240.00305 * 2 1 3 5 5 N 1.46895 * 109.47035 * 184.99817 * 4 2 1 6 6 C 1.46906 * 110.99789 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47109 * 179.97438 * 6 5 4 8 8 O 1.21296 * 119.99996 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99978 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99848 * 180.02562 * 9 7 6 11 11 H 1.07998 * 120.00405 * 359.97438 * 10 9 7 12 12 C 1.38953 * 119.99358 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00464 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99431 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47151 * 90.00176 * 14 12 10 16 16 H 1.48498 * 109.47184 * 210.00131 * 14 12 10 17 17 H 1.48501 * 109.47470 * 330.00337 * 14 12 10 18 18 N 1.46503 * 109.47499 * 119.99933 * 2 1 3 19 19 C 1.46506 * 119.99649 * 60.00148 * 18 2 1 20 20 C 1.34777 * 120.00185 * 240.00699 * 18 2 1 21 21 O 1.21274 * 120.00112 * 359.97438 * 20 18 2 22 22 C 1.50700 * 119.99615 * 179.97438 * 20 18 2 23 23 C 1.52999 * 109.46636 * 179.97438 * 22 20 18 24 24 N 1.46507 * 109.46873 * 179.97438 * 23 22 20 25 25 C 1.34599 * 126.43842 * 125.00248 * 24 23 22 26 26 N 1.31071 * 106.67878 * 180.02562 * 25 24 23 27 27 N 1.28836 * 107.99027 * 359.97438 * 26 25 24 28 28 N 1.28744 * 109.39871 * 359.73820 * 27 26 25 29 29 H 1.08997 * 109.47549 * 299.99706 * 1 2 3 30 30 H 1.08994 * 109.47227 * 60.00484 * 1 2 3 31 31 H 1.09003 * 109.46643 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46863 * 64.99659 * 4 2 1 33 33 H 1.09002 * 109.46661 * 304.99836 * 4 2 1 34 34 H 1.00902 * 111.00273 * 303.95364 * 5 4 2 35 35 H 1.08992 * 109.47459 * 299.99826 * 6 5 4 36 36 H 1.09004 * 109.47040 * 59.99976 * 6 5 4 37 37 H 0.97002 * 119.99767 * 359.97438 * 9 7 6 38 38 H 0.96997 * 119.99770 * 179.97438 * 13 12 10 39 39 H 1.08998 * 109.46574 * 90.00048 * 19 18 2 40 40 H 1.08998 * 109.46996 * 210.00432 * 19 18 2 41 41 H 1.09001 * 109.46821 * 330.00269 * 19 18 2 42 42 H 1.09001 * 109.47030 * 299.99252 * 22 20 18 43 43 H 1.08995 * 109.47333 * 59.99635 * 22 20 18 44 44 H 1.08996 * 109.47397 * 299.99669 * 23 22 20 45 45 H 1.09003 * 109.47527 * 60.00187 * 23 22 20 46 46 H 1.08002 * 126.65834 * 359.96470 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5041 -0.8265 -1.1904 6 6 4.0304 -1.5157 -2.3762 7 6 5.5318 -1.6041 -2.2807 8 8 6.1068 -1.1391 -1.3192 9 7 6.2356 -2.1997 -3.2637 10 6 7.6015 -2.2806 -3.1766 11 1 8.1135 -1.8666 -2.3205 12 6 8.3270 -2.8952 -4.1899 13 7 7.7040 -3.3993 -5.2313 14 14 10.1880 -3.0047 -4.0715 15 1 10.5668 -4.2616 -3.3773 16 1 10.7721 -2.9979 -5.4368 17 1 10.7048 -1.8416 -3.3063 18 7 2.0184 -0.6906 1.1962 19 6 1.6645 -2.0932 1.4280 20 6 2.7932 -0.0356 2.0834 21 8 3.0864 1.1254 1.8913 22 6 3.2950 -0.7459 3.3141 23 6 4.1455 0.2156 4.1466 24 7 4.6330 -0.4747 5.3433 25 6 5.9163 -0.5908 5.7324 26 7 5.9104 -1.2792 6.8477 27 7 4.6874 -1.5702 7.1294 28 7 3.9123 -1.0806 6.2254 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -0.1582 -2.1369 33 1 1.6055 -1.7198 -1.2952 34 1 3.9280 0.0827 -1.0823 35 1 3.6097 -2.5197 -2.4295 36 1 3.7558 -0.9586 -3.2720 37 1 5.7757 -2.5718 -4.0324 38 1 8.2105 -3.8280 -5.9387 39 1 2.4159 -2.7376 0.9716 40 1 1.6238 -2.2853 2.5001 41 1 0.6905 -2.3002 0.9846 42 1 2.4470 -1.0881 3.9073 43 1 3.9004 -1.6025 3.0177 44 1 4.9935 0.5575 3.5532 45 1 3.5405 1.0725 4.4430 46 1 6.7827 -0.1946 5.2236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714792455.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:18 Heat of formation + Delta-G solvation = 54.584967 kcal Electronic energy + Delta-G solvation = -29301.875325 eV Core-core repulsion = 25071.918023 eV Total energy + Delta-G solvation = -4229.957302 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.36164 -40.34372 -38.36976 -37.21133 -36.14190 -34.81757 -33.86456 -32.77440 -32.36166 -31.28302 -31.00318 -27.69019 -27.11605 -26.22187 -25.03471 -24.01835 -23.37289 -22.83204 -21.28057 -19.46955 -19.07097 -18.37175 -17.93191 -17.31961 -17.02747 -16.55977 -16.20973 -15.99338 -15.72634 -15.27968 -14.87566 -14.58503 -14.33638 -14.11630 -13.97282 -13.60249 -13.44823 -13.30451 -13.17282 -12.90114 -12.67022 -12.46045 -12.44431 -12.35049 -12.06053 -11.85553 -11.74116 -11.57622 -11.49996 -11.37203 -11.10116 -11.08262 -11.00957 -10.53945 -10.43719 -10.26990 -10.01085 -9.55939 -8.82117 -8.50370 -8.13345 -8.01360 -6.46873 -3.87884 1.03385 1.69386 2.06449 2.44241 2.80488 3.14003 3.23110 3.28529 3.85011 3.91196 3.98589 4.05881 4.20174 4.23316 4.35016 4.52768 4.70481 4.80434 4.86358 4.92349 5.02120 5.04589 5.11009 5.20230 5.22903 5.27802 5.32280 5.35597 5.40930 5.46645 5.51487 5.65642 5.71178 5.77894 5.87781 5.89688 5.91793 6.19335 6.33681 7.12010 7.17808 7.50066 7.56596 7.96325 8.00805 8.39682 8.55644 9.12645 9.48737 9.99914 10.70833 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.008426 B = 0.002830 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3322.257187 B = 9893.187319 C =12648.698472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.138 3.862 3 H 0.102 0.898 4 C 0.047 3.953 5 N -0.664 5.664 6 C 0.051 3.949 7 C 0.440 3.560 8 O -0.583 6.583 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.269 1.269 18 N -0.588 5.588 19 C 0.075 3.925 20 C 0.532 3.468 21 O -0.545 6.545 22 C -0.154 4.154 23 C 0.130 3.870 24 N -0.307 5.307 25 C 0.167 3.833 26 N -0.310 5.310 27 N -0.079 5.079 28 N -0.096 5.096 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.350 0.650 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.127 0.873 45 H 0.114 0.886 46 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.323 5.290 11.087 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 H 0.120 0.880 4 C -0.083 4.083 5 N -0.296 5.296 6 C -0.081 4.081 7 C 0.226 3.774 8 O -0.467 6.467 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 N -0.319 5.319 19 C -0.068 4.068 20 C 0.319 3.681 21 O -0.423 6.423 22 C -0.195 4.195 23 C 0.009 3.991 24 N -0.109 5.109 25 C -0.132 4.132 26 N -0.158 5.158 27 N -0.074 5.074 28 N -0.083 5.083 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.170 0.830 35 H 0.102 0.898 36 H 0.060 0.940 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.145 0.855 45 H 0.132 0.868 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -15.315 4.837 12.890 20.594 hybrid contribution 0.901 0.622 -2.287 2.535 sum -14.414 5.459 10.603 18.708 Atomic orbital electron populations 1.22099 0.94505 1.02511 1.02696 1.21126 0.93587 0.98013 0.83846 0.88041 1.22359 0.89736 1.00531 0.95722 1.60024 1.03006 1.26824 1.39748 1.21666 0.95314 0.99743 0.91415 1.19792 0.87988 0.84608 0.85034 1.90518 1.71117 1.51881 1.33233 1.41871 1.07422 1.50897 1.19812 1.19689 0.81487 1.35214 1.06538 0.87957 1.25265 1.00726 0.96716 0.95195 1.69608 1.36758 1.38518 1.09421 0.85863 0.82112 0.78906 0.77451 1.20354 1.20900 1.19395 1.47461 1.50158 1.12341 1.21972 1.21823 1.01564 0.81766 1.01647 1.19901 0.77838 0.86554 0.83772 1.90714 1.57670 1.16973 1.76948 1.21900 1.01939 1.00038 0.95634 1.22039 1.02036 0.94313 0.80690 1.48811 1.06182 1.36345 1.19561 1.27851 0.89901 1.00273 0.95156 1.75019 1.14233 1.14306 1.12287 1.78629 0.94852 1.16593 1.17285 1.78825 1.21984 1.09763 0.97730 0.91999 0.91200 0.92034 0.94359 0.90819 0.83005 0.89795 0.93987 0.77495 0.91834 0.91414 0.91325 0.90970 0.87283 0.87386 0.85509 0.86829 0.74722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.17 37.16 0.34 -0.73 16 2 C 0.14 1.30 2.88 -67.93 -0.20 1.11 16 3 H 0.10 1.15 6.90 -51.93 -0.36 0.79 16 4 C 0.05 0.49 4.98 -3.82 -0.02 0.47 16 5 N -0.66 -9.79 5.85 -115.06 -0.67 -10.46 16 6 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 7 C 0.44 10.01 7.82 -10.98 -0.09 9.93 16 8 O -0.58 -15.29 15.78 5.54 0.09 -15.21 16 9 N -0.56 -13.92 5.29 -10.96 -0.06 -13.98 16 10 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 11 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.16 13.05 55.50 0.72 -23.44 16 14 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 15 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 18 N -0.59 -5.61 2.49 -173.93 -0.43 -6.04 16 19 C 0.08 0.55 9.40 59.85 0.56 1.11 16 20 C 0.53 5.71 7.67 -10.98 -0.08 5.62 16 21 O -0.54 -7.44 15.31 5.56 0.09 -7.36 16 22 C -0.15 -1.25 4.40 -27.88 -0.12 -1.38 16 23 C 0.13 0.98 5.77 -4.04 -0.02 0.96 16 24 N -0.31 -2.86 3.44 -62.55 -0.22 -3.07 16 25 C 0.17 1.51 12.79 -90.39 -1.16 0.35 16 26 N -0.31 -3.92 12.36 29.59 0.37 -3.55 16 27 N -0.08 -1.09 13.43 60.35 0.81 -0.28 16 28 N -0.10 -1.15 13.08 60.35 0.79 -0.36 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.36 6.66 -51.93 -0.35 0.01 16 32 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.71 7.84 -51.93 -0.41 0.30 16 34 H 0.35 5.80 8.43 -39.29 -0.33 5.47 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 38 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.39 6.44 -51.93 -0.33 0.06 16 41 H 0.07 0.41 6.43 -51.93 -0.33 0.08 16 42 H 0.11 0.75 7.40 -51.93 -0.38 0.37 16 43 H 0.11 0.93 8.11 -51.93 -0.42 0.51 16 44 H 0.13 0.87 8.04 -51.93 -0.42 0.45 16 45 H 0.11 0.79 8.10 -51.93 -0.42 0.37 16 46 H 0.24 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 391.79 15.07 5.90 5.90 Total: -1.00 -35.29 391.79 -5.24 -40.53 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -6.55 Total: 11.19 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -1.05 Total: 10.42 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: 1.31 Total: -61.18 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: 0.17 Total: -22.56 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.29 -5.24 -40.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714792455.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.116 kcal (2) G-P(sol) polarization free energy of solvation -35.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds