Wall clock time and date at job start Tue Mar 31 2020 22:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46898 * 2 1 4 4 C 1.53004 * 109.47522 * 240.00305 * 2 1 3 5 5 N 1.46895 * 109.47035 * 184.99817 * 4 2 1 6 6 C 1.46906 * 110.99789 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47109 * 179.97438 * 6 5 4 8 8 O 1.21296 * 119.99996 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99978 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99848 * 180.02562 * 9 7 6 11 11 H 1.07998 * 120.00405 * 359.97438 * 10 9 7 12 12 C 1.38953 * 119.99358 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00464 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99431 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47151 * 90.00176 * 14 12 10 16 16 H 1.48498 * 109.47184 * 210.00131 * 14 12 10 17 17 H 1.48501 * 109.47470 * 330.00337 * 14 12 10 18 18 N 1.46503 * 109.47499 * 119.99933 * 2 1 3 19 19 C 1.46506 * 119.99649 * 60.00148 * 18 2 1 20 20 C 1.34777 * 120.00185 * 240.00699 * 18 2 1 21 21 O 1.21274 * 120.00112 * 359.97438 * 20 18 2 22 22 C 1.50700 * 119.99615 * 179.97438 * 20 18 2 23 23 C 1.52999 * 109.46636 * 179.97438 * 22 20 18 24 24 N 1.46507 * 109.46873 * 179.97438 * 23 22 20 25 25 C 1.34599 * 126.43842 * 125.00248 * 24 23 22 26 26 N 1.31071 * 106.67878 * 180.02562 * 25 24 23 27 27 N 1.28836 * 107.99027 * 359.97438 * 26 25 24 28 28 N 1.28744 * 109.39871 * 359.73820 * 27 26 25 29 29 H 1.08997 * 109.47549 * 299.99706 * 1 2 3 30 30 H 1.08994 * 109.47227 * 60.00484 * 1 2 3 31 31 H 1.09003 * 109.46643 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46863 * 64.99659 * 4 2 1 33 33 H 1.09002 * 109.46661 * 304.99836 * 4 2 1 34 34 H 1.00902 * 111.00273 * 303.95364 * 5 4 2 35 35 H 1.08992 * 109.47459 * 299.99826 * 6 5 4 36 36 H 1.09004 * 109.47040 * 59.99976 * 6 5 4 37 37 H 0.97002 * 119.99767 * 359.97438 * 9 7 6 38 38 H 0.96997 * 119.99770 * 179.97438 * 13 12 10 39 39 H 1.08998 * 109.46574 * 90.00048 * 19 18 2 40 40 H 1.08998 * 109.46996 * 210.00432 * 19 18 2 41 41 H 1.09001 * 109.46821 * 330.00269 * 19 18 2 42 42 H 1.09001 * 109.47030 * 299.99252 * 22 20 18 43 43 H 1.08995 * 109.47333 * 59.99635 * 22 20 18 44 44 H 1.08996 * 109.47397 * 299.99669 * 23 22 20 45 45 H 1.09003 * 109.47527 * 60.00187 * 23 22 20 46 46 H 1.08002 * 126.65834 * 359.96470 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5041 -0.8265 -1.1904 6 6 4.0304 -1.5157 -2.3762 7 6 5.5318 -1.6041 -2.2807 8 8 6.1068 -1.1391 -1.3192 9 7 6.2356 -2.1997 -3.2637 10 6 7.6015 -2.2806 -3.1766 11 1 8.1135 -1.8666 -2.3205 12 6 8.3270 -2.8952 -4.1899 13 7 7.7040 -3.3993 -5.2313 14 14 10.1880 -3.0047 -4.0715 15 1 10.5668 -4.2616 -3.3773 16 1 10.7721 -2.9979 -5.4368 17 1 10.7048 -1.8416 -3.3063 18 7 2.0184 -0.6906 1.1962 19 6 1.6645 -2.0932 1.4280 20 6 2.7932 -0.0356 2.0834 21 8 3.0864 1.1254 1.8913 22 6 3.2950 -0.7459 3.3141 23 6 4.1455 0.2156 4.1466 24 7 4.6330 -0.4747 5.3433 25 6 5.9163 -0.5908 5.7324 26 7 5.9104 -1.2792 6.8477 27 7 4.6874 -1.5702 7.1294 28 7 3.9123 -1.0806 6.2254 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -0.1582 -2.1369 33 1 1.6055 -1.7198 -1.2952 34 1 3.9280 0.0827 -1.0823 35 1 3.6097 -2.5197 -2.4295 36 1 3.7558 -0.9586 -3.2720 37 1 5.7757 -2.5718 -4.0324 38 1 8.2105 -3.8280 -5.9387 39 1 2.4159 -2.7376 0.9716 40 1 1.6238 -2.2853 2.5001 41 1 0.6905 -2.3002 0.9846 42 1 2.4470 -1.0881 3.9073 43 1 3.9004 -1.6025 3.0177 44 1 4.9935 0.5575 3.5532 45 1 3.5405 1.0725 4.4430 46 1 6.7827 -0.1946 5.2236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714792455.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:17 Heat of formation + Delta-G solvation = 27.711040 kcal Electronic energy + Delta-G solvation = -29303.040666 eV Core-core repulsion = 25071.918023 eV Total energy + Delta-G solvation = -4231.122643 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.19378 -41.14979 -40.12035 -38.13370 -36.96905 -36.16465 -35.54160 -33.61925 -33.32111 -33.11845 -31.76638 -28.96035 -27.78936 -26.99478 -26.61768 -24.84279 -24.59075 -23.67366 -22.05691 -21.08508 -20.05786 -19.82788 -19.10530 -18.13296 -17.92011 -17.75988 -17.12602 -16.97762 -16.68228 -16.49518 -16.37683 -15.99890 -15.42191 -15.24532 -15.08310 -14.91675 -14.39472 -14.20128 -14.08022 -13.92664 -13.61375 -13.51930 -13.27533 -13.22166 -13.13179 -13.03634 -12.86304 -12.76228 -12.56131 -12.44728 -12.40050 -12.22670 -12.13020 -11.88116 -11.74556 -11.50968 -11.36975 -10.86115 -10.35491 -10.01930 -9.56671 -9.30230 -8.47579 -5.96031 0.24705 0.97968 1.19970 1.37252 1.41480 1.53620 1.63022 2.05391 2.09643 2.28292 2.91587 3.20159 3.22511 3.41926 3.51261 3.55991 3.62605 3.83483 3.91141 4.16878 4.20742 4.31700 4.34352 4.35694 4.36926 4.45609 4.50939 4.56269 4.63463 4.66540 4.72092 4.73643 4.81152 4.84246 5.03452 5.10520 5.21166 5.31710 5.40170 5.61428 5.88476 6.10291 6.33523 6.42665 6.59653 7.12278 7.16923 7.53922 7.56230 8.11408 8.69834 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.008426 B = 0.002830 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3322.257187 B = 9893.187319 C =12648.698472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.137 3.863 3 H 0.078 0.922 4 C 0.050 3.950 5 N -0.674 5.674 6 C 0.067 3.933 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.574 5.574 10 C -0.332 4.332 11 H 0.078 0.922 12 C -0.012 4.012 13 N -0.921 5.921 14 Si 0.990 3.010 15 H -0.271 1.271 16 H -0.272 1.272 17 H -0.272 1.272 18 N -0.588 5.588 19 C 0.073 3.927 20 C 0.524 3.476 21 O -0.581 6.581 22 C -0.145 4.145 23 C 0.132 3.868 24 N -0.301 5.301 25 C 0.179 3.821 26 N -0.342 5.342 27 N -0.110 5.110 28 N -0.105 5.105 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.337 0.663 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.051 0.949 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.123 0.877 43 H 0.104 0.896 44 H 0.136 0.864 45 H 0.121 0.879 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.377 4.951 10.370 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.034 3.966 3 H 0.096 0.904 4 C -0.080 4.080 5 N -0.305 5.305 6 C -0.066 4.066 7 C 0.225 3.775 8 O -0.508 6.508 9 N -0.212 5.212 10 C -0.462 4.462 11 H 0.096 0.904 12 C -0.212 4.212 13 N -0.562 5.562 14 Si 0.814 3.186 15 H -0.197 1.197 16 H -0.196 1.196 17 H -0.197 1.197 18 N -0.319 5.319 19 C -0.070 4.070 20 C 0.313 3.687 21 O -0.462 6.462 22 C -0.186 4.186 23 C 0.012 3.988 24 N -0.103 5.103 25 C -0.119 4.119 26 N -0.191 5.191 27 N -0.105 5.105 28 N -0.092 5.092 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.155 0.845 35 H 0.123 0.877 36 H 0.081 0.919 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.141 0.859 43 H 0.122 0.878 44 H 0.154 0.846 45 H 0.139 0.861 46 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -16.422 4.465 12.153 20.912 hybrid contribution 1.172 0.772 -2.100 2.526 sum -15.250 5.237 10.053 19.001 Atomic orbital electron populations 1.22026 0.91954 1.03664 1.03182 1.21135 0.95404 0.96642 0.83449 0.90353 1.22471 0.86864 1.01839 0.96791 1.60041 1.05500 1.25987 1.38992 1.21520 0.90433 1.01562 0.93049 1.20906 0.90595 0.82413 0.83540 1.90489 1.72792 1.52952 1.34564 1.41945 1.06844 1.51768 1.20607 1.19640 0.83082 1.36817 1.06617 0.90365 1.26011 1.04785 0.95862 0.94562 1.69665 1.38259 1.38538 1.09731 0.84963 0.77005 0.78767 0.77847 1.19666 1.19631 1.19719 1.47618 1.49517 1.13153 1.21625 1.21960 1.02049 0.80019 1.02925 1.20311 0.77626 0.86293 0.84512 1.90695 1.59056 1.18538 1.77881 1.21823 1.02379 0.99590 0.94801 1.22152 1.02525 0.94134 0.80023 1.48911 1.06242 1.35783 1.19392 1.28601 0.90734 0.98539 0.94049 1.74949 1.14134 1.15862 1.14125 1.78601 0.95522 1.17935 1.18423 1.78749 1.22357 1.10077 0.98020 0.92177 0.90111 0.90470 0.92994 0.89201 0.84495 0.87664 0.91949 0.77027 0.91324 0.93014 0.89695 0.88800 0.85891 0.87754 0.84621 0.86077 0.70720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.17 71.98 0.66 -0.96 16 2 C 0.14 2.38 2.88 44.99 0.13 2.51 16 3 H 0.08 1.75 6.90 -2.39 -0.02 1.74 16 4 C 0.05 0.93 4.98 86.31 0.43 1.36 16 5 N -0.67 -19.09 5.85 -517.92 -3.03 -22.12 16 6 C 0.07 2.10 6.17 85.56 0.53 2.63 16 7 C 0.44 19.96 7.82 87.66 0.69 20.65 16 8 O -0.62 -33.21 15.78 -3.08 -0.05 -33.26 16 9 N -0.57 -28.61 5.29 -306.98 -1.62 -30.23 16 10 C -0.33 -18.48 9.68 84.04 0.81 -17.67 16 11 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 12 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 13 N -0.92 -48.88 13.05 21.66 0.28 -48.60 16 14 Si 0.99 42.22 29.55 68.60 2.03 44.25 16 15 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 16 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 18 N -0.59 -10.42 2.49 -822.58 -2.04 -12.46 16 19 C 0.07 0.91 9.40 127.77 1.20 2.11 16 20 C 0.52 10.91 7.67 87.66 0.67 11.58 16 21 O -0.58 -15.91 15.31 -3.01 -0.05 -15.96 16 22 C -0.15 -2.21 4.40 29.85 0.13 -2.08 16 23 C 0.13 1.86 5.77 86.38 0.50 2.35 16 24 N -0.30 -5.31 3.44 -351.80 -1.21 -6.52 16 25 C 0.18 3.01 12.79 180.27 2.31 5.32 16 26 N -0.34 -8.55 12.36 -60.29 -0.74 -9.30 16 27 N -0.11 -3.06 13.43 37.01 0.50 -2.56 16 28 N -0.10 -2.45 13.08 37.02 0.48 -1.97 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.61 6.66 -2.39 -0.02 0.59 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 1.41 7.84 -2.39 -0.02 1.40 16 34 H 0.34 11.14 8.43 -89.69 -0.76 10.38 16 35 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 36 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.40 18.72 7.90 -92.71 -0.73 17.98 16 38 H 0.28 13.80 8.31 -92.71 -0.77 13.02 16 39 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 0.78 6.44 -2.39 -0.02 0.77 16 41 H 0.09 0.77 6.43 -2.39 -0.02 0.75 16 42 H 0.12 1.51 7.40 -2.39 -0.02 1.49 16 43 H 0.10 1.70 8.11 -2.39 -0.02 1.68 16 44 H 0.14 1.71 8.04 -2.39 -0.02 1.69 16 45 H 0.12 1.57 8.10 -2.39 -0.02 1.55 16 46 H 0.28 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -78.33 391.79 2.61 -75.72 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: -0.46 Total: 35.39 kcal Atomic # 6 Polarization: 19.09 SS G_CDS: 8.52 Total: 27.62 kcal Atomic # 7 Polarization: -126.37 SS G_CDS: -7.39 Total: -133.76 kcal Atomic # 8 Polarization: -49.12 SS G_CDS: -0.09 Total: -49.22 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -78.33 2.61 -75.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714792455.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.429 kcal (2) G-P(sol) polarization free energy of solvation -78.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds