Wall clock time and date at job start Tue Mar 31 2020 22:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 N 1.46501 * 109.47349 * 175.00381 * 4 2 1 6 6 C 1.46500 * 119.99382 * 269.99867 * 5 4 2 7 7 C 1.34776 * 120.00288 * 89.99689 * 5 4 2 8 8 O 1.21276 * 119.99952 * 359.97438 * 7 5 4 9 9 C 1.50703 * 119.99616 * 180.02562 * 7 5 4 10 10 C 1.50696 * 109.46722 * 179.97438 * 9 7 5 11 11 C 1.33648 * 122.75321 * 85.02386 * 10 9 7 12 12 S 1.76189 * 107.92787 * 179.97438 * 11 10 9 13 13 C 1.70980 * 90.28529 * 0.02562 * 12 11 10 14 14 C 1.50694 * 124.92116 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47346 * 239.97875 * 14 13 12 16 16 C 1.53010 * 109.46853 * 359.97405 * 14 13 12 17 17 C 1.52994 * 109.47481 * 119.97120 * 14 13 12 18 18 N 1.29028 * 110.16192 * 359.73373 * 13 12 11 19 19 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 20 20 C 1.36931 * 119.99788 * 84.99932 * 19 2 1 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 2 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 2 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48496 * 109.47141 * 59.99751 * 24 22 20 26 26 H 1.48490 * 109.47071 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46993 * 300.00028 * 24 22 20 28 28 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 30 30 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 31 31 H 1.09009 * 109.46837 * 294.99855 * 4 2 1 32 32 H 1.09000 * 109.47433 * 54.99587 * 4 2 1 33 33 H 1.09000 * 109.47354 * 90.00395 * 6 5 4 34 34 H 1.09009 * 109.46833 * 209.99836 * 6 5 4 35 35 H 1.08999 * 109.47622 * 329.99348 * 6 5 4 36 36 H 1.08994 * 109.47062 * 299.99630 * 9 7 5 37 37 H 1.08993 * 109.47169 * 59.99970 * 9 7 5 38 38 H 1.07999 * 126.03160 * 359.97438 * 11 10 9 39 39 H 1.09000 * 109.47489 * 59.99485 * 15 14 13 40 40 H 1.09004 * 109.47307 * 179.97438 * 15 14 13 41 41 H 1.09000 * 109.46846 * 299.99448 * 15 14 13 42 42 H 1.09003 * 109.46928 * 60.00056 * 16 14 13 43 43 H 1.09004 * 109.46919 * 179.97438 * 16 14 13 44 44 H 1.09000 * 109.47036 * 299.99936 * 16 14 13 45 45 H 1.09000 * 109.46915 * 60.00428 * 17 14 13 46 46 H 1.09004 * 109.47454 * 180.02562 * 17 14 13 47 47 H 1.09003 * 109.47318 * 300.00567 * 17 14 13 48 48 H 0.97000 * 119.99792 * 264.99726 * 19 2 1 49 49 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1906 6 6 4.1258 -1.9919 0.5612 7 6 4.2676 0.1492 1.7156 8 8 3.7495 1.1143 2.2362 9 6 5.7695 0.0413 1.6547 10 6 6.3868 1.2519 2.3061 11 6 6.5959 1.3366 3.6234 12 16 7.3293 2.9036 3.9565 13 6 7.2813 3.2895 2.2915 14 6 7.7721 4.5816 1.6910 15 6 6.6146 5.2857 0.9801 16 6 8.3150 5.4855 2.7998 17 6 8.8849 4.2856 0.6838 18 7 6.7696 2.3118 1.6229 19 7 2.0183 -0.6907 -1.1962 20 6 2.1491 -0.0075 -2.3757 21 1 1.8926 1.0405 -2.4242 22 6 2.6172 -0.6605 -3.5077 23 7 2.9303 -1.9375 -3.4485 24 14 2.8029 0.2732 -5.1149 25 1 3.7570 1.3957 -4.9279 26 1 3.3164 -0.6440 -6.1637 27 1 1.4824 0.8102 -5.5308 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7517 -0.1583 2.1370 32 1 1.6054 -1.7198 1.2952 33 1 4.2798 -1.7932 -0.4994 34 1 5.0864 -2.1898 1.0370 35 1 3.4770 -2.8600 0.6778 36 1 6.0907 -0.8579 2.1802 37 1 6.0880 -0.0128 0.6137 38 1 6.3574 0.5783 4.3545 39 1 5.8218 5.4966 1.6978 40 1 6.9695 6.2206 0.5462 41 1 6.2279 4.6419 0.1902 42 1 9.1396 4.9839 3.3064 43 1 8.6704 6.4199 2.3654 44 1 7.5221 5.6964 3.5175 45 1 8.4982 3.6418 -0.1061 46 1 9.2403 5.2203 0.2497 47 1 9.7096 3.7840 1.1903 48 1 2.2490 -1.6318 -1.1526 49 1 3.2571 -2.3939 -4.2397 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717747082.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:39 Heat of formation + Delta-G solvation = 9.402525 kcal Electronic energy + Delta-G solvation = -28027.127923 eV Core-core repulsion = 24309.211827 eV Total energy + Delta-G solvation = -3717.916096 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.31612 -39.17915 -36.94892 -36.13346 -34.16932 -32.21197 -31.41221 -28.89076 -28.15395 -27.62383 -27.36937 -26.70285 -25.49413 -24.61309 -23.49570 -20.74361 -19.92333 -19.31302 -18.68285 -17.45911 -17.23904 -16.68465 -15.96582 -15.52818 -15.19121 -14.85513 -14.55693 -14.26632 -13.94512 -13.88553 -13.59320 -13.44559 -13.17534 -12.90592 -12.65262 -12.44069 -12.30362 -12.19209 -12.15072 -11.92638 -11.83290 -11.81638 -11.58197 -11.37048 -11.21579 -11.20192 -11.17175 -11.06215 -10.80485 -10.66494 -10.32569 -10.05851 -9.61938 -9.51263 -9.47500 -9.29426 -8.89533 -8.64666 -8.07990 -6.90591 -5.74532 -3.00786 0.77816 1.40145 1.77048 2.79163 3.05186 3.46601 3.50639 3.52395 3.55233 3.92244 4.55990 4.63147 4.71382 4.77246 4.91647 5.06305 5.18180 5.29078 5.33371 5.43622 5.45758 5.51987 5.58534 5.58695 5.61954 5.66626 5.71595 5.74049 5.78067 5.84347 5.89264 5.90363 5.96955 6.10889 6.15876 6.20182 6.29508 6.31602 6.37091 6.50545 6.67630 6.87295 6.92220 7.20218 7.74665 7.82385 7.86465 8.45080 8.59652 9.56637 10.12751 10.49467 11.48342 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011081 B = 0.003381 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.196117 B = 8278.372537 C = 9614.709275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.155 3.845 3 H 0.050 0.950 4 C 0.113 3.887 5 N -0.595 5.595 6 C 0.076 3.924 7 C 0.521 3.479 8 O -0.545 6.545 9 C -0.069 4.069 10 C 0.100 3.900 11 C -0.252 4.252 12 S 0.105 5.895 13 C 0.065 3.935 14 C 0.011 3.989 15 C -0.136 4.136 16 C -0.152 4.152 17 C -0.134 4.134 18 N -0.455 5.455 19 N -0.719 5.719 20 C -0.229 4.229 21 H 0.067 0.933 22 C -0.013 4.013 23 N -0.936 5.936 24 Si 0.903 3.097 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.287 1.287 28 H 0.046 0.954 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.172 0.828 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.055 0.945 48 H 0.382 0.618 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.634 7.075 16.183 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 H 0.068 0.932 4 C -0.011 4.011 5 N -0.327 5.327 6 C -0.068 4.068 7 C 0.308 3.692 8 O -0.422 6.422 9 C -0.111 4.111 10 C -0.032 4.032 11 C -0.391 4.391 12 S 0.361 5.639 13 C -0.214 4.214 14 C 0.007 3.993 15 C -0.194 4.194 16 C -0.210 4.210 17 C -0.193 4.193 18 N -0.168 5.168 19 N -0.361 5.361 20 C -0.361 4.361 21 H 0.085 0.915 22 C -0.208 4.208 23 N -0.586 5.586 24 Si 0.734 3.266 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.214 1.214 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.132 0.868 38 H 0.190 0.810 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.216 0.784 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.671 8.223 16.675 21.952 hybrid contribution -0.397 -0.818 -1.454 1.715 sum 11.274 7.405 15.221 20.338 Atomic orbital electron populations 1.22369 0.98917 1.00758 1.00208 1.20643 0.91863 0.96295 0.86811 0.93166 1.21841 0.78859 1.01015 0.99359 1.47556 1.06646 1.21345 1.57126 1.21955 0.97222 0.87322 1.00254 1.20135 0.88509 0.82363 0.78154 1.90663 1.74965 1.31006 1.45615 1.20239 0.92696 0.94404 1.03780 1.19496 0.99569 0.94660 0.89506 1.26694 1.10587 1.01953 0.99888 1.83695 1.57682 1.11212 1.11280 1.26992 1.02009 0.99373 0.92992 1.19222 0.96516 0.87882 0.95651 1.21849 0.96613 1.00103 1.00858 1.22018 1.01414 0.99808 0.97786 1.21840 0.96719 1.02150 0.98564 1.65901 1.12220 1.00067 1.38649 1.42373 1.78157 1.10415 1.05177 1.19190 1.35704 0.93795 0.87381 0.91545 1.24637 1.02421 0.95976 0.97813 1.69620 1.51471 1.08554 1.28925 0.86322 0.77777 0.78693 0.83778 1.21378 1.21760 1.21436 0.93506 0.94401 0.92610 0.90379 0.91068 0.89702 0.92237 0.91360 0.87660 0.86804 0.81016 0.92462 0.91745 0.91107 0.91945 0.90783 0.91860 0.91199 0.91713 0.92636 0.78396 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.49 37.16 0.35 -2.68 16 2 C 0.15 3.23 3.20 -67.93 -0.22 3.02 16 3 H 0.05 1.19 8.08 -51.93 -0.42 0.77 16 4 C 0.11 1.97 5.07 -4.04 -0.02 1.95 16 5 N -0.60 -10.22 2.73 -181.56 -0.50 -10.71 16 6 C 0.08 1.15 9.02 59.85 0.54 1.69 16 7 C 0.52 9.34 7.67 -10.98 -0.08 9.26 16 8 O -0.54 -11.51 15.61 5.56 0.09 -11.42 16 9 C -0.07 -1.01 4.67 -29.04 -0.14 -1.14 16 10 C 0.10 1.53 5.23 -84.22 -0.44 1.09 16 11 C -0.25 -3.31 11.14 29.12 0.32 -2.98 16 12 S 0.10 1.21 21.57 -107.50 -2.32 -1.11 16 13 C 0.07 0.88 5.78 -13.46 -0.08 0.80 16 14 C 0.01 0.12 0.99 -155.66 -0.15 -0.03 16 15 C -0.14 -1.54 8.45 37.16 0.31 -1.23 16 16 C -0.15 -1.22 7.54 37.16 0.28 -0.94 16 17 C -0.13 -1.33 8.45 37.15 0.31 -1.02 16 18 N -0.46 -7.38 10.51 -8.06 -0.08 -7.47 16 19 N -0.72 -17.61 4.39 -53.42 -0.23 -17.84 16 20 C -0.23 -6.37 9.93 -15.06 -0.15 -6.52 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 23 N -0.94 -27.22 13.06 55.49 0.72 -26.49 16 24 Si 0.90 22.62 29.55 -169.99 -5.02 17.60 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.08 1.35 7.42 -51.92 -0.39 0.96 16 32 H 0.07 1.12 7.89 -51.93 -0.41 0.71 16 33 H 0.08 1.62 7.39 -51.93 -0.38 1.24 16 34 H 0.06 0.70 6.44 -51.92 -0.33 0.36 16 35 H 0.07 0.95 7.89 -51.93 -0.41 0.54 16 36 H 0.11 1.16 7.40 -51.93 -0.38 0.77 16 37 H 0.11 1.74 8.11 -51.93 -0.42 1.32 16 38 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.46 7.92 -51.93 -0.41 0.05 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.51 7.92 -51.93 -0.41 0.10 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.38 9.54 6.26 -40.82 -0.26 9.28 16 49 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 409.23 15.07 6.17 6.17 Total: -1.00 -33.31 409.23 -8.85 -42.17 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -8.42 Total: 8.34 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 0.75 Total: 0.78 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -0.09 Total: -62.52 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.09 Total: -11.42 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.32 Total: -1.11 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.31 -8.85 -42.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717747082.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.571 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds