Wall clock time and date at job start Tue Mar 31 2020 22:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 N 1.46501 * 109.47349 * 175.00381 * 4 2 1 6 6 C 1.46500 * 119.99382 * 269.99867 * 5 4 2 7 7 C 1.34776 * 120.00288 * 89.99689 * 5 4 2 8 8 O 1.21276 * 119.99952 * 359.97438 * 7 5 4 9 9 C 1.50703 * 119.99616 * 180.02562 * 7 5 4 10 10 C 1.50696 * 109.46722 * 179.97438 * 9 7 5 11 11 C 1.33648 * 122.75321 * 85.02386 * 10 9 7 12 12 S 1.76189 * 107.92787 * 179.97438 * 11 10 9 13 13 C 1.70980 * 90.28529 * 0.02562 * 12 11 10 14 14 C 1.50694 * 124.92116 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47346 * 239.97875 * 14 13 12 16 16 C 1.53010 * 109.46853 * 359.97405 * 14 13 12 17 17 C 1.52994 * 109.47481 * 119.97120 * 14 13 12 18 18 N 1.29028 * 110.16192 * 359.73373 * 13 12 11 19 19 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 20 20 C 1.36931 * 119.99788 * 84.99932 * 19 2 1 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 2 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 2 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48496 * 109.47141 * 59.99751 * 24 22 20 26 26 H 1.48490 * 109.47071 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46993 * 300.00028 * 24 22 20 28 28 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 30 30 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 31 31 H 1.09009 * 109.46837 * 294.99855 * 4 2 1 32 32 H 1.09000 * 109.47433 * 54.99587 * 4 2 1 33 33 H 1.09000 * 109.47354 * 90.00395 * 6 5 4 34 34 H 1.09009 * 109.46833 * 209.99836 * 6 5 4 35 35 H 1.08999 * 109.47622 * 329.99348 * 6 5 4 36 36 H 1.08994 * 109.47062 * 299.99630 * 9 7 5 37 37 H 1.08993 * 109.47169 * 59.99970 * 9 7 5 38 38 H 1.07999 * 126.03160 * 359.97438 * 11 10 9 39 39 H 1.09000 * 109.47489 * 59.99485 * 15 14 13 40 40 H 1.09004 * 109.47307 * 179.97438 * 15 14 13 41 41 H 1.09000 * 109.46846 * 299.99448 * 15 14 13 42 42 H 1.09003 * 109.46928 * 60.00056 * 16 14 13 43 43 H 1.09004 * 109.46919 * 179.97438 * 16 14 13 44 44 H 1.09000 * 109.47036 * 299.99936 * 16 14 13 45 45 H 1.09000 * 109.46915 * 60.00428 * 17 14 13 46 46 H 1.09004 * 109.47454 * 180.02562 * 17 14 13 47 47 H 1.09003 * 109.47318 * 300.00567 * 17 14 13 48 48 H 0.97000 * 119.99792 * 264.99726 * 19 2 1 49 49 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1906 6 6 4.1258 -1.9919 0.5612 7 6 4.2676 0.1492 1.7156 8 8 3.7495 1.1143 2.2362 9 6 5.7695 0.0413 1.6547 10 6 6.3868 1.2519 2.3061 11 6 6.5959 1.3366 3.6234 12 16 7.3293 2.9036 3.9565 13 6 7.2813 3.2895 2.2915 14 6 7.7721 4.5816 1.6910 15 6 6.6146 5.2857 0.9801 16 6 8.3150 5.4855 2.7998 17 6 8.8849 4.2856 0.6838 18 7 6.7696 2.3118 1.6229 19 7 2.0183 -0.6907 -1.1962 20 6 2.1491 -0.0075 -2.3757 21 1 1.8926 1.0405 -2.4242 22 6 2.6172 -0.6605 -3.5077 23 7 2.9303 -1.9375 -3.4485 24 14 2.8029 0.2732 -5.1149 25 1 3.7570 1.3957 -4.9279 26 1 3.3164 -0.6440 -6.1637 27 1 1.4824 0.8102 -5.5308 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7517 -0.1583 2.1370 32 1 1.6054 -1.7198 1.2952 33 1 4.2798 -1.7932 -0.4994 34 1 5.0864 -2.1898 1.0370 35 1 3.4770 -2.8600 0.6778 36 1 6.0907 -0.8579 2.1802 37 1 6.0880 -0.0128 0.6137 38 1 6.3574 0.5783 4.3545 39 1 5.8218 5.4966 1.6978 40 1 6.9695 6.2206 0.5462 41 1 6.2279 4.6419 0.1902 42 1 9.1396 4.9839 3.3064 43 1 8.6704 6.4199 2.3654 44 1 7.5221 5.6964 3.5175 45 1 8.4982 3.6418 -0.1061 46 1 9.2403 5.2203 0.2497 47 1 9.7096 3.7840 1.1903 48 1 2.2490 -1.6318 -1.1526 49 1 3.2571 -2.3939 -4.2397 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717747082.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:38 Heat of formation + Delta-G solvation = -11.168693 kcal Electronic energy + Delta-G solvation = -28028.019958 eV Core-core repulsion = 24309.211827 eV Total energy + Delta-G solvation = -3718.808131 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.46984 -40.44793 -38.04181 -37.56476 -35.80562 -34.06012 -32.65921 -30.72164 -29.35489 -28.34104 -28.22484 -28.04968 -26.79641 -25.90121 -25.34352 -22.11126 -21.27014 -20.26565 -20.01244 -19.28264 -18.48647 -18.06097 -17.21062 -16.85753 -16.54294 -16.34273 -15.86416 -15.54829 -15.28296 -15.10995 -14.91832 -14.74997 -14.27121 -14.14367 -14.07202 -13.77170 -13.61775 -13.37300 -13.23630 -13.12509 -13.09637 -12.97691 -12.80285 -12.67158 -12.65213 -12.51318 -12.43290 -12.24931 -12.19888 -11.99641 -11.91566 -11.88454 -11.65057 -11.02047 -10.85871 -10.51085 -10.28992 -9.64717 -9.56320 -8.93910 -7.92987 -5.17965 -0.21649 0.46212 0.77618 1.44231 1.45551 1.51539 1.60389 1.73440 2.28539 2.55692 3.01214 3.40210 3.64219 3.68498 3.89974 3.92850 3.94008 4.07533 4.15200 4.22699 4.31174 4.37619 4.38850 4.47695 4.63603 4.64228 4.68604 4.70135 4.71815 4.79587 4.80032 4.85515 4.93035 4.93593 4.96957 5.02682 5.09082 5.18747 5.23429 5.25345 5.31529 5.38151 5.39491 5.50819 5.68655 6.29733 6.46513 6.86585 7.20755 7.37813 8.10365 8.40535 9.29086 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011081 B = 0.003381 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.196117 B = 8278.372537 C = 9614.709275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.153 3.847 3 H 0.013 0.987 4 C 0.118 3.882 5 N -0.597 5.597 6 C 0.080 3.920 7 C 0.515 3.485 8 O -0.582 6.582 9 C -0.061 4.061 10 C 0.069 3.931 11 C -0.257 4.257 12 S 0.163 5.837 13 C 0.046 3.954 14 C 0.007 3.993 15 C -0.132 4.132 16 C -0.148 4.148 17 C -0.129 4.129 18 N -0.500 5.500 19 N -0.722 5.722 20 C -0.238 4.238 21 H 0.055 0.945 22 C -0.060 4.060 23 N -0.956 5.956 24 Si 0.957 3.043 25 H -0.289 1.289 26 H -0.289 1.289 27 H -0.283 1.283 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.042 0.958 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.145 0.855 37 H 0.100 0.900 38 H 0.195 0.805 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.035 0.965 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.062 0.938 45 H 0.041 0.959 46 H 0.087 0.913 47 H 0.062 0.938 48 H 0.380 0.620 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.646 7.291 17.992 23.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.043 3.957 3 H 0.031 0.969 4 C -0.006 4.006 5 N -0.328 5.328 6 C -0.063 4.063 7 C 0.304 3.696 8 O -0.463 6.463 9 C -0.104 4.104 10 C -0.063 4.063 11 C -0.396 4.396 12 S 0.419 5.581 13 C -0.232 4.232 14 C 0.003 3.997 15 C -0.191 4.191 16 C -0.206 4.206 17 C -0.188 4.188 18 N -0.214 5.214 19 N -0.364 5.364 20 C -0.370 4.370 21 H 0.073 0.927 22 C -0.253 4.253 23 N -0.607 5.607 24 Si 0.787 3.213 25 H -0.216 1.216 26 H -0.215 1.215 27 H -0.209 1.209 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.061 0.939 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.163 0.837 37 H 0.118 0.882 38 H 0.212 0.788 39 H 0.067 0.933 40 H 0.108 0.892 41 H 0.054 0.946 42 H 0.091 0.909 43 H 0.114 0.886 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.106 0.894 47 H 0.081 0.919 48 H 0.214 0.786 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 12.676 8.440 18.501 23.963 hybrid contribution -0.720 -0.816 -1.950 2.233 sum 11.956 7.623 16.551 21.795 Atomic orbital electron populations 1.22208 0.96848 1.01589 1.00553 1.20751 0.93286 0.94436 0.87195 0.96909 1.21764 0.79469 1.01926 0.97399 1.47694 1.06569 1.21828 1.56672 1.21972 0.99506 0.86915 0.97880 1.20748 0.89917 0.81655 0.77288 1.90629 1.75927 1.32367 1.47393 1.20239 0.90174 0.96328 1.03610 1.19644 1.01109 0.94979 0.90536 1.27074 1.09561 1.03393 0.99611 1.83382 1.56142 1.09511 1.09016 1.27525 1.01550 0.99692 0.94435 1.19410 0.96283 0.87321 0.96708 1.21819 0.96911 1.00627 0.99770 1.22014 1.01577 1.00144 0.96833 1.21803 0.96515 1.02789 0.97712 1.65910 1.13810 1.01204 1.40456 1.42388 1.78436 1.10231 1.05336 1.19356 1.35235 0.93527 0.88854 0.92731 1.25241 1.02874 0.96861 1.00346 1.69729 1.52236 1.09397 1.29293 0.85461 0.77626 0.77521 0.80643 1.21588 1.21468 1.20932 0.92341 0.91588 0.94725 0.89845 0.88534 0.93949 0.88434 0.89735 0.83715 0.88159 0.78783 0.93278 0.89153 0.94592 0.90949 0.88618 0.91881 0.94026 0.89445 0.91908 0.78635 0.93983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.61 9.49 71.98 0.68 -4.93 16 2 C 0.15 6.48 3.20 44.99 0.14 6.63 16 3 H 0.01 0.63 8.08 -2.39 -0.02 0.61 16 4 C 0.12 4.05 5.07 86.38 0.44 4.49 16 5 N -0.60 -20.26 2.73 -846.73 -2.31 -22.57 16 6 C 0.08 2.36 9.02 127.77 1.15 3.51 16 7 C 0.52 18.53 7.67 87.66 0.67 19.20 16 8 O -0.58 -25.06 15.61 -3.02 -0.05 -25.11 16 9 C -0.06 -1.79 4.67 29.10 0.14 -1.65 16 10 C 0.07 2.11 5.23 41.52 0.22 2.33 16 11 C -0.26 -6.39 11.14 66.78 0.74 -5.65 16 12 S 0.16 3.47 21.57 -56.49 -1.22 2.25 16 13 C 0.05 1.23 5.78 88.52 0.51 1.74 16 14 C 0.01 0.14 0.99 -52.93 -0.05 0.09 16 15 C -0.13 -3.06 8.45 71.98 0.61 -2.45 16 16 C -0.15 -2.02 7.54 71.99 0.54 -1.48 16 17 C -0.13 -2.49 8.45 71.98 0.61 -1.89 16 18 N -0.50 -16.65 10.51 -179.40 -1.89 -18.53 16 19 N -0.72 -36.04 4.39 -322.93 -1.42 -37.46 16 20 C -0.24 -13.54 9.93 84.04 0.83 -12.71 16 21 H 0.05 3.18 7.83 -2.91 -0.02 3.15 16 22 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 23 N -0.96 -56.22 13.06 21.65 0.28 -55.94 16 24 Si 0.96 47.19 29.55 68.60 2.03 49.22 16 25 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 27 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 2.80 7.42 -2.38 -0.02 2.78 16 32 H 0.10 2.83 7.89 -2.39 -0.02 2.81 16 33 H 0.04 1.64 7.39 -2.39 -0.02 1.63 16 34 H 0.10 2.09 6.44 -2.38 -0.02 2.08 16 35 H 0.08 2.21 7.89 -2.39 -0.02 2.19 16 36 H 0.15 2.88 7.40 -2.39 -0.02 2.86 16 37 H 0.10 3.18 8.11 -2.39 -0.02 3.16 16 38 H 0.20 3.70 8.06 -2.91 -0.02 3.68 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 40 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.07 0.86 7.92 -2.39 -0.02 0.84 16 43 H 0.10 0.91 8.14 -2.39 -0.02 0.90 16 44 H 0.06 0.87 7.92 -2.39 -0.02 0.85 16 45 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.38 19.20 6.26 -92.71 -0.58 18.62 16 49 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 Total: -1.00 -74.88 409.23 3.48 -71.40 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: 0.35 Total: 32.49 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 7.70 Total: 4.25 kcal Atomic # 7 Polarization: -129.17 SS G_CDS: -5.33 Total: -134.50 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.05 Total: -25.11 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -1.22 Total: 2.25 kcal Total: -74.88 3.48 -71.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717747082.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.228 kcal (2) G-P(sol) polarization free energy of solvation -74.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds