Wall clock time and date at job start Tue Mar 31 2020 22:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46847 * 2 1 4 4 C 1.53004 * 109.47615 * 240.00245 * 2 1 3 5 5 N 1.46491 * 109.47290 * 184.99792 * 4 2 1 6 6 C 1.46507 * 120.00068 * 269.99738 * 5 4 2 7 7 C 1.34779 * 120.00132 * 90.00136 * 5 4 2 8 8 O 1.21277 * 119.99874 * 4.92199 * 7 5 4 9 9 C 1.50697 * 119.99847 * 184.92250 * 7 5 4 10 10 H 1.08996 * 109.47308 * 305.68260 * 9 7 5 11 11 C 1.53003 * 109.47226 * 65.68580 * 9 7 5 12 12 N 1.46497 * 109.46914 * 185.68003 * 9 7 5 13 13 C 1.34777 * 120.00163 * 155.00015 * 12 9 7 14 14 O 1.21284 * 119.99918 * 0.02562 * 13 12 9 15 15 C 1.50700 * 120.00497 * 180.02562 * 13 12 9 16 16 N 1.46499 * 109.47480 * 180.02562 * 15 13 12 17 17 C 1.34597 * 126.43975 * 124.99722 * 16 15 13 18 18 N 1.31065 * 106.67917 * 179.97438 * 17 16 15 19 19 N 1.28842 * 107.99435 * 0.02562 * 18 17 16 20 20 N 1.28741 * 109.39444 * 359.97438 * 19 18 17 21 21 N 1.46501 * 109.47363 * 119.99822 * 2 1 3 22 22 C 1.36931 * 120.00181 * 275.00130 * 21 2 1 23 23 H 1.08001 * 120.00313 * 0.02562 * 22 21 2 24 24 C 1.38810 * 120.00058 * 179.97438 * 22 21 2 25 25 N 1.31628 * 120.00072 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00282 * 180.02562 * 24 22 21 27 27 H 1.48489 * 109.47531 * 89.99951 * 26 24 22 28 28 H 1.48502 * 109.47309 * 210.00341 * 26 24 22 29 29 H 1.48501 * 109.46687 * 329.99926 * 26 24 22 30 30 H 1.08998 * 109.47463 * 299.99550 * 1 2 3 31 31 H 1.09002 * 109.47115 * 60.00360 * 1 2 3 32 32 H 1.09002 * 109.46601 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46763 * 64.99689 * 4 2 1 34 34 H 1.08994 * 109.46716 * 305.00175 * 4 2 1 35 35 H 1.08998 * 109.47141 * 275.80312 * 6 5 4 36 36 H 1.09004 * 109.46842 * 35.80056 * 6 5 4 37 37 H 1.08998 * 109.46951 * 155.79786 * 6 5 4 38 38 H 1.09002 * 109.46566 * 309.41890 * 11 9 7 39 39 H 1.08997 * 109.47121 * 69.42039 * 11 9 7 40 40 H 1.09001 * 109.47379 * 189.42366 * 11 9 7 41 41 H 0.96993 * 120.00676 * 335.00366 * 12 9 7 42 42 H 1.09003 * 109.47132 * 59.99966 * 15 13 12 43 43 H 1.09000 * 109.47170 * 300.00015 * 15 13 12 44 44 H 1.07997 * 126.65920 * 359.71964 * 17 16 15 45 45 H 0.97004 * 119.99393 * 95.00543 * 21 2 1 46 46 H 0.96994 * 120.00035 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5001 -0.8262 -1.1906 6 6 4.3343 0.2343 -1.7613 7 6 4.0758 -1.8985 -0.6116 8 8 3.3889 -2.8178 -0.2193 9 6 5.5732 -1.9552 -0.4517 10 1 6.0482 -1.7989 -1.4202 11 6 6.0241 -0.8625 0.5198 12 7 5.9587 -3.2666 0.0754 13 6 7.1951 -3.7497 -0.1578 14 8 7.9888 -3.0985 -0.8036 15 6 7.5916 -5.0989 0.3839 16 7 8.9736 -5.3936 -0.0027 17 6 9.9842 -5.7156 0.8259 18 7 11.0427 -5.8983 0.0750 19 7 10.7003 -5.6983 -1.1509 20 7 9.4506 -5.3933 -1.2015 21 7 2.0184 -0.6906 1.1962 22 6 2.1492 -0.0075 2.3757 23 1 1.8919 1.0403 2.4244 24 6 2.6114 -0.6619 3.5092 25 7 2.9245 -1.9391 3.4501 26 14 2.7892 0.2697 5.1185 27 1 1.5213 0.1785 5.8860 28 1 3.8935 -0.3236 5.9146 29 1 3.0942 1.6949 4.8342 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.7517 -0.1582 -2.1369 34 1 1.6055 -1.7197 -1.2952 35 1 4.4571 0.0641 -2.8308 36 1 3.8553 1.2000 -1.5997 37 1 5.3112 0.2279 -1.2778 38 1 5.5953 0.0926 0.2166 39 1 5.6864 -1.1093 1.5263 40 1 7.1118 -0.7924 0.5084 41 1 5.3242 -3.7872 0.5922 42 1 6.9292 -5.8629 -0.0234 43 1 7.5125 -5.0915 1.4710 44 1 9.9337 -5.8023 1.9013 45 1 2.2491 -1.6317 1.1525 46 1 3.2471 -2.3965 4.2422 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717749409.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:09 Heat of formation + Delta-G solvation = 84.656795 kcal Electronic energy + Delta-G solvation = -30637.377858 eV Core-core repulsion = 26408.724568 eV Total energy + Delta-G solvation = -4228.653289 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.29715 -40.50273 -39.34209 -36.35778 -35.66680 -34.96518 -34.50339 -32.59849 -32.19507 -31.12619 -29.03259 -28.60757 -27.06543 -26.01341 -24.22109 -23.96067 -23.71548 -22.99503 -20.80544 -20.15359 -19.27410 -18.24105 -17.98211 -17.28101 -16.86537 -16.60100 -16.06459 -15.85550 -15.70737 -15.22561 -15.08202 -14.69202 -14.17207 -13.81999 -13.80108 -13.47866 -13.30315 -13.01291 -12.76754 -12.61596 -12.31071 -12.27687 -12.17173 -12.09275 -11.64022 -11.47675 -11.43414 -11.34099 -11.27090 -11.16073 -10.91087 -10.73994 -10.56166 -10.46776 -10.13481 -10.10077 -9.67192 -9.53482 -9.17883 -8.95008 -8.26432 -6.94896 -5.76918 -3.05234 1.08021 1.62037 2.14902 2.22456 2.72784 2.93376 3.36077 3.39149 3.42876 3.43909 3.94880 4.04761 4.30325 4.47787 4.53836 4.59606 4.64066 5.14409 5.17383 5.24254 5.25594 5.34876 5.41334 5.51349 5.51733 5.64784 5.70817 5.79987 5.85338 5.90285 5.93505 5.97751 6.18680 6.25229 6.28674 6.50915 6.56362 6.70137 6.81824 7.03465 7.27673 7.61348 7.66405 7.91141 8.39508 8.48035 8.48533 9.53558 10.14468 10.53241 11.43607 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.012849 B = 0.003202 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.663017 B = 8743.090309 C =10155.251045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 H 0.045 0.955 4 C 0.109 3.891 5 N -0.601 5.601 6 C 0.064 3.936 7 C 0.525 3.475 8 O -0.519 6.519 9 C 0.135 3.865 10 H 0.105 0.895 11 C -0.165 4.165 12 N -0.695 5.695 13 C 0.505 3.495 14 O -0.520 6.520 15 C 0.095 3.905 16 N -0.298 5.298 17 C 0.161 3.839 18 N -0.309 5.309 19 N -0.082 5.082 20 N -0.063 5.063 21 N -0.720 5.720 22 C -0.234 4.234 23 H 0.065 0.935 24 C -0.011 4.011 25 N -0.923 5.923 26 Si 0.898 3.102 27 H -0.292 1.292 28 H -0.293 1.293 29 H -0.284 1.284 30 H 0.055 0.945 31 H 0.035 0.965 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.419 0.581 42 H 0.139 0.861 43 H 0.148 0.852 44 H 0.236 0.764 45 H 0.396 0.604 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.369 -2.807 -7.444 9.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 H 0.062 0.938 4 C -0.014 4.014 5 N -0.334 5.334 6 C -0.079 4.079 7 C 0.311 3.689 8 O -0.395 6.395 9 C 0.027 3.973 10 H 0.123 0.877 11 C -0.223 4.223 12 N -0.350 5.350 13 C 0.288 3.712 14 O -0.395 6.395 15 C -0.030 4.030 16 N -0.100 5.100 17 C -0.138 4.138 18 N -0.157 5.157 19 N -0.076 5.076 20 N -0.049 5.049 21 N -0.365 5.365 22 C -0.366 4.366 23 H 0.083 0.917 24 C -0.207 4.207 25 N -0.572 5.572 26 Si 0.729 3.271 27 H -0.219 1.219 28 H -0.220 1.220 29 H -0.210 1.210 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.257 0.743 42 H 0.157 0.843 43 H 0.166 0.834 44 H 0.252 0.748 45 H 0.233 0.767 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.300 -2.777 -8.803 11.176 hybrid contribution -0.995 0.297 2.301 2.525 sum 5.305 -2.480 -6.501 8.750 Atomic orbital electron populations 1.22400 0.98973 1.01027 1.00034 1.20649 0.92073 0.95621 0.87430 0.93751 1.21878 0.78773 1.02305 0.98417 1.47407 1.06928 1.20721 1.58346 1.22090 0.96428 0.91380 0.97984 1.20122 0.89340 0.82308 0.77099 1.90686 1.64069 1.36886 1.47815 1.20721 0.93005 0.83971 0.99643 0.87701 1.22272 1.01437 0.97588 1.00961 1.45593 1.13952 1.20083 1.55342 1.20017 0.82879 0.87054 0.81250 1.90828 1.50514 1.59117 1.39016 1.22020 0.78062 0.98522 1.04434 1.48155 1.11616 1.44813 1.05383 1.27756 0.83206 1.01282 1.01532 1.74977 1.23740 1.19076 0.97875 1.78661 1.02889 1.13976 1.12108 1.79010 1.06822 1.15586 1.03510 1.42629 1.77687 1.11509 1.04690 1.19196 1.36132 0.93653 0.87612 0.91739 1.24663 1.02610 0.95899 0.97534 1.69723 1.50963 1.08300 1.28178 0.86340 0.77267 0.78838 0.84620 1.21916 1.21961 1.21010 0.92598 0.94551 0.93355 0.90901 0.90066 0.92876 0.90991 0.89913 0.90032 0.89841 0.91833 0.74279 0.84339 0.83444 0.74812 0.76678 0.93925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.49 37.16 0.35 -2.42 16 2 C 0.15 2.82 3.20 -67.93 -0.22 2.60 16 3 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 4 C 0.11 1.67 5.18 -4.04 -0.02 1.65 16 5 N -0.60 -8.87 2.77 -181.57 -0.50 -9.37 16 6 C 0.06 0.71 9.73 59.85 0.58 1.29 16 7 C 0.52 8.70 6.21 -10.99 -0.07 8.63 16 8 O -0.52 -10.29 13.43 5.56 0.07 -10.21 16 9 C 0.13 1.91 2.15 -69.08 -0.15 1.76 16 10 H 0.11 1.41 7.16 -51.93 -0.37 1.03 16 11 C -0.16 -2.41 8.96 37.16 0.33 -2.08 16 12 N -0.70 -8.84 4.98 -54.94 -0.27 -9.11 16 13 C 0.51 6.02 7.81 -10.99 -0.09 5.94 16 14 O -0.52 -8.21 15.36 5.55 0.09 -8.13 16 15 C 0.10 0.71 6.97 -5.19 -0.04 0.67 16 16 N -0.30 -3.14 3.19 -63.74 -0.20 -3.35 16 17 C 0.16 1.47 12.79 -90.40 -1.16 0.31 16 18 N -0.31 -4.10 12.36 29.59 0.37 -3.74 16 19 N -0.08 -1.27 13.43 60.35 0.81 -0.46 16 20 N -0.06 -0.91 12.29 60.35 0.74 -0.17 16 21 N -0.72 -16.85 4.52 -53.42 -0.24 -17.10 16 22 C -0.23 -6.10 9.93 -15.06 -0.15 -6.25 16 23 H 0.06 1.66 7.83 -52.49 -0.41 1.25 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 25 N -0.92 -25.79 13.06 55.49 0.72 -25.06 16 26 Si 0.90 21.32 29.55 -169.99 -5.02 16.30 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.86 8.07 -51.93 -0.42 0.45 16 34 H 0.08 1.36 7.36 -51.93 -0.38 0.98 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 37 H 0.08 0.88 4.11 -51.93 -0.21 0.66 16 38 H 0.08 1.14 5.41 -51.93 -0.28 0.86 16 39 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.42 5.32 7.74 -40.82 -0.32 5.00 16 42 H 0.14 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.15 0.50 8.08 -51.93 -0.42 0.08 16 44 H 0.24 0.79 8.06 -52.49 -0.42 0.37 16 45 H 0.40 10.06 5.24 -40.82 -0.21 9.85 16 46 H 0.25 6.83 8.31 -40.82 -0.34 6.50 16 LS Contribution 384.74 15.07 5.80 5.80 Total: -1.00 -36.93 384.74 -4.74 -41.67 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -6.39 Total: 11.21 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: -0.71 Total: 11.72 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: 1.42 Total: -68.35 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.16 Total: -18.34 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.93 -4.74 -41.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717749409.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.327 kcal (2) G-P(sol) polarization free energy of solvation -36.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds