Wall clock time and date at job start Tue Mar 31 2020 22:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46855 * 2 1 4 4 C 1.52999 * 109.47481 * 120.00793 * 2 1 3 5 5 N 1.46497 * 109.47121 * 175.00290 * 4 2 1 6 6 C 1.46503 * 119.99707 * 269.99272 * 5 4 2 7 7 C 1.36933 * 120.00694 * 89.99797 * 5 4 2 8 8 H 1.08004 * 119.99889 * 23.64178 * 7 5 4 9 9 C 1.38813 * 119.99965 * 203.65210 * 7 5 4 10 10 N 1.31619 * 120.00155 * 11.25396 * 9 7 5 11 11 Si 1.86801 * 119.99543 * 191.25833 * 9 7 5 12 12 H 1.48498 * 109.47414 * 59.99746 * 11 9 7 13 13 H 1.48502 * 109.46889 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47180 * 299.99497 * 11 9 7 15 15 N 1.46507 * 109.46799 * 240.00397 * 2 1 3 16 16 C 1.34778 * 119.99990 * 84.99780 * 15 2 1 17 17 O 1.21687 * 120.00015 * 0.02562 * 16 15 2 18 18 C 1.46678 * 119.99949 * 179.97438 * 16 15 2 19 19 C 1.35658 * 126.13030 * 359.97438 * 18 16 15 20 20 N 1.30944 * 114.19203 * 180.02562 * 19 18 16 21 21 C 1.29433 * 117.36467 * 359.97438 * 20 19 18 22 22 C 1.50701 * 124.80656 * 179.97438 * 21 20 19 23 23 C 1.52994 * 109.47199 * 90.02500 * 22 21 20 24 24 C 1.53003 * 109.47362 * 59.99954 * 23 22 21 25 25 C 1.53004 * 109.47114 * 300.00317 * 23 22 21 26 26 C 1.53002 * 109.47371 * 180.02562 * 23 22 21 27 27 S 1.70948 * 110.38862 * 0.24470 * 21 20 19 28 28 H 1.09000 * 109.46929 * 299.99219 * 1 2 3 29 29 H 1.08997 * 109.47515 * 59.99819 * 1 2 3 30 30 H 1.09005 * 109.47028 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46491 * 294.99520 * 4 2 1 32 32 H 1.08994 * 109.47519 * 54.99313 * 4 2 1 33 33 H 1.09001 * 109.47131 * 94.58305 * 6 5 4 34 34 H 1.08996 * 109.47849 * 214.58925 * 6 5 4 35 35 H 1.09007 * 109.46971 * 334.59314 * 6 5 4 36 36 H 0.97003 * 119.99377 * 180.02562 * 10 9 7 37 37 H 0.97001 * 119.99615 * 264.99843 * 15 2 1 38 38 H 1.07996 * 122.90539 * 0.03205 * 19 18 16 39 39 H 1.09004 * 109.46882 * 330.02399 * 22 21 20 40 40 H 1.08997 * 109.47139 * 210.02791 * 22 21 20 41 41 H 1.08998 * 109.46882 * 300.00288 * 24 23 22 42 42 H 1.08997 * 109.46718 * 59.99867 * 24 23 22 43 43 H 1.08999 * 109.47496 * 180.02562 * 24 23 22 44 44 H 1.09003 * 109.47161 * 180.02562 * 25 23 22 45 45 H 1.09003 * 109.46848 * 299.99509 * 25 23 22 46 46 H 1.08990 * 109.47403 * 59.99878 * 25 23 22 47 47 H 1.09000 * 109.46628 * 299.99782 * 26 23 22 48 48 H 1.08994 * 109.46918 * 59.99794 * 26 23 22 49 49 H 1.08999 * 109.47180 * 180.02562 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5001 -0.8264 1.1904 6 6 4.1259 -1.9920 0.5609 7 6 4.2800 0.1647 1.7238 8 1 3.8837 0.8065 2.4968 9 6 5.5798 0.3446 1.2710 10 7 5.9917 -0.2794 0.1878 11 14 6.7445 1.4721 2.1993 12 1 6.9140 0.9741 3.5879 13 1 8.0632 1.4920 1.5166 14 1 6.1825 2.8462 2.2314 15 7 2.0183 -0.6906 -1.1963 16 6 2.1470 -0.0181 -2.3572 17 8 1.8580 1.1627 -2.4117 18 6 2.6363 -0.7094 -3.5548 19 6 2.9940 -2.0156 -3.6344 20 7 3.3995 -2.3895 -4.8220 21 6 3.4109 -1.4936 -5.7561 22 6 3.8449 -1.7392 -7.1783 23 6 2.6375 -2.1721 -8.0123 24 6 1.5774 -1.0692 -7.9858 25 6 2.0496 -3.4586 -7.4290 26 6 3.0782 -2.4221 -9.4560 27 16 2.8712 0.0095 -5.1464 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7518 -0.1584 2.1369 32 1 1.6055 -1.7199 1.2950 33 1 4.3541 -1.7639 -0.4803 34 1 5.0468 -2.2395 1.0889 35 1 3.4423 -2.8398 0.6056 36 1 6.9001 -0.1539 -0.1283 37 1 2.2490 -1.6317 -1.1527 38 1 2.9481 -2.6888 -2.7912 39 1 4.6001 -2.5250 -7.1971 40 1 4.2637 -0.8227 -7.5937 41 1 1.2636 -0.8916 -6.9572 42 1 1.9963 -0.1527 -8.4013 43 1 0.7171 -1.3778 -8.5797 44 1 1.1897 -3.7673 -8.0235 45 1 2.8048 -4.2444 -7.4480 46 1 1.7357 -3.2810 -6.4005 47 1 3.4972 -1.5057 -9.8718 48 1 3.8332 -3.2080 -9.4745 49 1 2.2179 -2.7301 -10.0503 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722904129.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:05 Heat of formation + Delta-G solvation = 13.320911 kcal Electronic energy + Delta-G solvation = -28066.889722 eV Core-core repulsion = 24349.143540 eV Total energy + Delta-G solvation = -3717.746182 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.07136 -39.03252 -37.53321 -36.32088 -34.03384 -31.92416 -30.88468 -30.00984 -27.99466 -27.56174 -27.40689 -26.19814 -25.60873 -24.37222 -22.41848 -21.26622 -20.31278 -19.61790 -18.93365 -17.78382 -16.91054 -16.75851 -15.62919 -15.41616 -14.93488 -14.83704 -14.68193 -14.48060 -14.16015 -13.84817 -13.68146 -13.33116 -13.24706 -13.07814 -12.86922 -12.65946 -12.30797 -12.16291 -11.97813 -11.94700 -11.84318 -11.45270 -11.44044 -11.14058 -11.10832 -10.99928 -10.92193 -10.83821 -10.78554 -10.56734 -10.23668 -10.02187 -9.92702 -9.84251 -9.31007 -9.23635 -8.77075 -8.59427 -8.38938 -6.75663 -5.72773 -3.19484 0.43302 1.29512 1.82228 2.66644 3.40128 3.45301 3.45639 3.59443 3.81905 4.01984 4.49063 4.50821 4.53564 4.67484 5.06288 5.13115 5.21122 5.29381 5.33599 5.38814 5.43733 5.48319 5.50062 5.55577 5.59849 5.67164 5.69160 5.75270 5.83539 5.84358 5.96231 5.97488 6.07726 6.08518 6.14410 6.20783 6.23491 6.45609 6.51146 6.61580 6.85255 7.10360 7.30025 7.64588 7.72487 7.80068 8.00617 8.38839 8.68766 9.22423 9.84704 10.32783 11.32128 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014888 B = 0.003118 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.264494 B = 8977.165540 C = 9755.059488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 H 0.088 0.912 4 C 0.142 3.858 5 N -0.597 5.597 6 C 0.160 3.840 7 C -0.258 4.258 8 H 0.067 0.933 9 C 0.006 3.994 10 N -0.903 5.903 11 Si 0.904 3.096 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.283 1.283 15 N -0.683 5.683 16 C 0.596 3.404 17 O -0.548 6.548 18 C -0.276 4.276 19 C 0.090 3.910 20 N -0.471 5.471 21 C 0.040 3.960 22 C -0.036 4.036 23 C -0.063 4.063 24 C -0.153 4.153 25 C -0.140 4.140 26 C -0.139 4.139 27 S 0.213 5.787 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.031 0.969 34 H 0.043 0.957 35 H -0.005 1.005 36 H 0.252 0.748 37 H 0.395 0.605 38 H 0.178 0.822 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.051 0.949 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.056 0.944 48 H 0.058 0.942 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.080 -6.065 -16.203 19.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.011 3.989 3 H 0.106 0.894 4 C 0.014 3.986 5 N -0.319 5.319 6 C 0.016 3.984 7 C -0.388 4.388 8 H 0.085 0.915 9 C -0.192 4.192 10 N -0.548 5.548 11 Si 0.734 3.266 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.209 1.209 15 N -0.332 5.332 16 C 0.380 3.620 17 O -0.427 6.427 18 C -0.400 4.400 19 C -0.068 4.068 20 N -0.185 5.185 21 C -0.235 4.235 22 C -0.077 4.077 23 C -0.065 4.065 24 C -0.211 4.211 25 C -0.197 4.197 26 C -0.196 4.196 27 S 0.471 5.529 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.013 0.987 36 H 0.062 0.938 37 H 0.230 0.770 38 H 0.195 0.805 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.037 -4.745 -16.869 19.716 hybrid contribution 0.977 -0.385 1.308 1.678 sum -8.059 -5.130 -15.561 18.260 Atomic orbital electron populations 1.22160 0.96683 1.01196 1.01809 1.21957 0.91761 0.99272 0.85938 0.89409 1.21214 0.85868 0.97267 0.94255 1.43875 0.99006 1.20873 1.68133 1.20866 0.94628 0.85036 0.97914 1.19112 0.94618 1.10712 1.14342 0.91480 1.25028 0.98904 0.99011 0.96299 1.70026 1.17263 1.45519 1.21945 0.86352 0.80331 0.80780 0.79146 1.21116 1.21700 1.20942 1.45550 1.65355 1.13597 1.08696 1.16604 0.77581 0.85896 0.81917 1.90786 1.51763 1.14971 1.85194 1.25882 1.15259 0.98904 0.99976 1.22101 0.96550 0.93032 0.95116 1.66104 1.17397 1.35086 0.99896 1.27306 1.02648 0.93163 1.00372 1.20441 0.98299 1.03303 0.85652 1.20520 0.94519 0.96407 0.95031 1.22074 0.98561 0.97983 1.02454 1.21868 1.00495 0.96175 1.01147 1.21845 1.01435 1.01793 0.94570 1.83934 1.56784 1.12279 0.99892 0.91905 0.92930 0.93111 0.92092 0.93934 0.95041 0.93784 0.98697 0.93814 0.77015 0.80497 0.88546 0.89558 0.92336 0.92252 0.92153 0.92956 0.92303 0.92124 0.92444 0.92321 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.48 37.16 0.35 -2.04 16 2 C 0.12 2.21 2.88 -67.93 -0.20 2.02 16 3 H 0.09 1.99 7.58 -51.93 -0.39 1.60 16 4 C 0.14 2.72 5.33 -4.04 -0.02 2.70 16 5 N -0.60 -14.24 2.78 -181.12 -0.50 -14.74 16 6 C 0.16 3.69 7.60 59.85 0.46 4.15 16 7 C -0.26 -6.98 9.66 -15.06 -0.15 -7.13 16 8 H 0.07 1.78 7.85 -52.48 -0.41 1.37 16 9 C 0.01 0.18 5.13 -17.43 -0.09 0.09 16 10 N -0.90 -26.09 10.66 55.49 0.59 -25.50 16 11 Si 0.90 22.16 29.57 -169.99 -5.03 17.14 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 N -0.68 -12.66 4.40 -55.11 -0.24 -12.90 16 16 C 0.60 11.90 7.75 -12.85 -0.10 11.80 16 17 O -0.55 -12.60 16.63 5.20 0.09 -12.51 16 18 C -0.28 -4.75 6.48 -37.10 -0.24 -5.00 16 19 C 0.09 1.40 10.93 -18.85 -0.21 1.19 16 20 N -0.47 -6.95 9.67 -11.50 -0.11 -7.06 16 21 C 0.04 0.52 4.91 -13.29 -0.07 0.45 16 22 C -0.04 -0.35 4.86 -27.89 -0.14 -0.48 16 23 C -0.06 -0.53 0.80 -154.51 -0.12 -0.65 16 24 C -0.15 -1.29 8.02 37.16 0.30 -1.00 16 25 C -0.14 -1.29 8.17 37.16 0.30 -0.98 16 26 C -0.14 -0.90 8.47 37.16 0.31 -0.59 16 27 S 0.21 3.08 21.41 -107.50 -2.30 0.78 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 1.13 8.03 -51.93 -0.42 0.72 16 32 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 33 H 0.03 0.78 6.90 -51.93 -0.36 0.42 16 34 H 0.04 1.12 7.30 -51.93 -0.38 0.74 16 35 H -0.01 -0.11 7.84 -51.93 -0.41 -0.51 16 36 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.40 6.68 5.88 -40.82 -0.24 6.44 16 38 H 0.18 2.47 7.15 -52.49 -0.38 2.09 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.59 6.05 -51.93 -0.31 0.27 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.68 6.64 -51.93 -0.34 0.34 16 47 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 402.00 15.07 6.06 6.06 Total: -1.00 -32.28 402.00 -9.30 -41.58 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -8.26 Total: 2.61 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 0.40 Total: 4.54 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: -0.27 Total: -60.20 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.14 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -2.30 Total: 0.78 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.28 -9.30 -41.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722904129.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.900 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds