Wall clock time and date at job start Tue Mar 31 2020 22:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46855 * 2 1 4 4 C 1.52999 * 109.47481 * 120.00793 * 2 1 3 5 5 N 1.46497 * 109.47121 * 175.00290 * 4 2 1 6 6 C 1.46503 * 119.99707 * 269.99272 * 5 4 2 7 7 C 1.36933 * 120.00694 * 89.99797 * 5 4 2 8 8 H 1.08004 * 119.99889 * 23.64178 * 7 5 4 9 9 C 1.38813 * 119.99965 * 203.65210 * 7 5 4 10 10 N 1.31619 * 120.00155 * 11.25396 * 9 7 5 11 11 Si 1.86801 * 119.99543 * 191.25833 * 9 7 5 12 12 H 1.48498 * 109.47414 * 59.99746 * 11 9 7 13 13 H 1.48502 * 109.46889 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47180 * 299.99497 * 11 9 7 15 15 N 1.46507 * 109.46799 * 240.00397 * 2 1 3 16 16 C 1.34778 * 119.99990 * 84.99780 * 15 2 1 17 17 O 1.21687 * 120.00015 * 0.02562 * 16 15 2 18 18 C 1.46678 * 119.99949 * 179.97438 * 16 15 2 19 19 C 1.35658 * 126.13030 * 359.97438 * 18 16 15 20 20 N 1.30944 * 114.19203 * 180.02562 * 19 18 16 21 21 C 1.29433 * 117.36467 * 359.97438 * 20 19 18 22 22 C 1.50701 * 124.80656 * 179.97438 * 21 20 19 23 23 C 1.52994 * 109.47199 * 90.02500 * 22 21 20 24 24 C 1.53003 * 109.47362 * 59.99954 * 23 22 21 25 25 C 1.53004 * 109.47114 * 300.00317 * 23 22 21 26 26 C 1.53002 * 109.47371 * 180.02562 * 23 22 21 27 27 S 1.70948 * 110.38862 * 0.24470 * 21 20 19 28 28 H 1.09000 * 109.46929 * 299.99219 * 1 2 3 29 29 H 1.08997 * 109.47515 * 59.99819 * 1 2 3 30 30 H 1.09005 * 109.47028 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46491 * 294.99520 * 4 2 1 32 32 H 1.08994 * 109.47519 * 54.99313 * 4 2 1 33 33 H 1.09001 * 109.47131 * 94.58305 * 6 5 4 34 34 H 1.08996 * 109.47849 * 214.58925 * 6 5 4 35 35 H 1.09007 * 109.46971 * 334.59314 * 6 5 4 36 36 H 0.97003 * 119.99377 * 180.02562 * 10 9 7 37 37 H 0.97001 * 119.99615 * 264.99843 * 15 2 1 38 38 H 1.07996 * 122.90539 * 0.03205 * 19 18 16 39 39 H 1.09004 * 109.46882 * 330.02399 * 22 21 20 40 40 H 1.08997 * 109.47139 * 210.02791 * 22 21 20 41 41 H 1.08998 * 109.46882 * 300.00288 * 24 23 22 42 42 H 1.08997 * 109.46718 * 59.99867 * 24 23 22 43 43 H 1.08999 * 109.47496 * 180.02562 * 24 23 22 44 44 H 1.09003 * 109.47161 * 180.02562 * 25 23 22 45 45 H 1.09003 * 109.46848 * 299.99509 * 25 23 22 46 46 H 1.08990 * 109.47403 * 59.99878 * 25 23 22 47 47 H 1.09000 * 109.46628 * 299.99782 * 26 23 22 48 48 H 1.08994 * 109.46918 * 59.99794 * 26 23 22 49 49 H 1.08999 * 109.47180 * 180.02562 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5001 -0.8264 1.1904 6 6 4.1259 -1.9920 0.5609 7 6 4.2800 0.1647 1.7238 8 1 3.8837 0.8065 2.4968 9 6 5.5798 0.3446 1.2710 10 7 5.9917 -0.2794 0.1878 11 14 6.7445 1.4721 2.1993 12 1 6.9140 0.9741 3.5879 13 1 8.0632 1.4920 1.5166 14 1 6.1825 2.8462 2.2314 15 7 2.0183 -0.6906 -1.1963 16 6 2.1470 -0.0181 -2.3572 17 8 1.8580 1.1627 -2.4117 18 6 2.6363 -0.7094 -3.5548 19 6 2.9940 -2.0156 -3.6344 20 7 3.3995 -2.3895 -4.8220 21 6 3.4109 -1.4936 -5.7561 22 6 3.8449 -1.7392 -7.1783 23 6 2.6375 -2.1721 -8.0123 24 6 1.5774 -1.0692 -7.9858 25 6 2.0496 -3.4586 -7.4290 26 6 3.0782 -2.4221 -9.4560 27 16 2.8712 0.0095 -5.1464 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7518 -0.1584 2.1369 32 1 1.6055 -1.7199 1.2950 33 1 4.3541 -1.7639 -0.4803 34 1 5.0468 -2.2395 1.0889 35 1 3.4423 -2.8398 0.6056 36 1 6.9001 -0.1539 -0.1283 37 1 2.2490 -1.6317 -1.1527 38 1 2.9481 -2.6888 -2.7912 39 1 4.6001 -2.5250 -7.1971 40 1 4.2637 -0.8227 -7.5937 41 1 1.2636 -0.8916 -6.9572 42 1 1.9963 -0.1527 -8.4013 43 1 0.7171 -1.3778 -8.5797 44 1 1.1897 -3.7673 -8.0235 45 1 2.8048 -4.2444 -7.4480 46 1 1.7357 -3.2810 -6.4005 47 1 3.4972 -1.5057 -9.8718 48 1 3.8332 -3.2080 -9.4745 49 1 2.2179 -2.7301 -10.0503 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722904129.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:04 Heat of formation + Delta-G solvation = -6.106209 kcal Electronic energy + Delta-G solvation = -28067.732146 eV Core-core repulsion = 24349.143540 eV Total energy + Delta-G solvation = -3718.588605 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.31318 -40.40480 -38.36824 -38.01462 -35.79249 -33.43318 -32.57216 -31.30451 -29.09112 -28.18221 -28.07333 -27.97824 -27.41111 -25.46572 -23.94541 -22.89234 -21.79199 -20.82984 -19.95577 -18.96284 -18.66791 -18.21525 -17.06126 -16.76514 -16.54897 -15.95120 -15.79404 -15.57183 -15.43675 -15.30112 -15.14088 -14.87570 -14.55620 -14.37789 -13.98950 -13.77786 -13.45937 -13.38227 -13.09603 -12.90337 -12.83127 -12.69052 -12.64365 -12.61865 -12.53801 -12.50923 -12.31413 -12.06991 -11.90119 -11.85072 -11.73265 -11.69807 -11.58251 -11.32438 -10.64342 -10.59696 -10.46087 -10.05833 -9.80765 -8.72771 -7.82186 -5.28910 -0.76904 0.12902 0.65896 1.42701 1.43593 1.44496 1.50405 2.14622 2.38501 2.50698 3.00801 3.31911 3.68804 3.75474 3.80036 3.82995 3.93251 4.12785 4.20621 4.23637 4.40018 4.51054 4.51697 4.59281 4.73820 4.76004 4.82242 4.84800 4.88206 4.90053 4.94566 4.97865 4.99859 5.08670 5.10778 5.17077 5.23485 5.35149 5.35927 5.36993 5.46310 5.52337 5.61963 5.64846 5.77736 6.33900 6.50710 6.56988 7.17539 7.19737 7.89523 8.30200 9.19487 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014888 B = 0.003118 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.264494 B = 8977.165540 C = 9755.059488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.123 3.877 3 H 0.040 0.960 4 C 0.142 3.858 5 N -0.611 5.611 6 C 0.173 3.827 7 C -0.261 4.261 8 H 0.068 0.932 9 C -0.049 4.049 10 N -0.928 5.928 11 Si 0.959 3.041 12 H -0.276 1.276 13 H -0.298 1.298 14 H -0.283 1.283 15 N -0.679 5.679 16 C 0.590 3.410 17 O -0.591 6.591 18 C -0.318 4.318 19 C 0.103 3.897 20 N -0.487 5.487 21 C 0.065 3.935 22 C -0.042 4.042 23 C -0.058 4.058 24 C -0.155 4.155 25 C -0.139 4.139 26 C -0.135 4.135 27 S 0.216 5.784 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.011 0.989 34 H 0.011 0.989 35 H 0.037 0.963 36 H 0.243 0.757 37 H 0.403 0.597 38 H 0.189 0.811 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.038 0.962 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.036 0.964 47 H 0.067 0.933 48 H 0.063 0.937 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.878 -7.295 -17.236 21.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.016 3.984 3 H 0.058 0.942 4 C 0.015 3.985 5 N -0.333 5.333 6 C 0.028 3.972 7 C -0.391 4.391 8 H 0.085 0.915 9 C -0.245 4.245 10 N -0.575 5.575 11 Si 0.788 3.212 12 H -0.201 1.201 13 H -0.224 1.224 14 H -0.210 1.210 15 N -0.327 5.327 16 C 0.376 3.624 17 O -0.474 6.474 18 C -0.443 4.443 19 C -0.055 4.055 20 N -0.202 5.202 21 C -0.210 4.210 22 C -0.082 4.082 23 C -0.060 4.060 24 C -0.213 4.213 25 C -0.196 4.196 26 C -0.192 4.192 27 S 0.474 5.526 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.029 0.971 34 H 0.030 0.970 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.240 0.760 38 H 0.206 0.794 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.057 0.943 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.055 0.945 47 H 0.086 0.914 48 H 0.082 0.918 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.870 -5.993 -17.876 21.281 hybrid contribution 1.168 -0.064 1.574 1.961 sum -8.702 -6.058 -16.301 19.446 Atomic orbital electron populations 1.22030 0.93359 1.03004 1.02077 1.21794 0.94244 0.96555 0.85853 0.94192 1.21404 0.83230 0.99406 0.94464 1.44082 1.00879 1.20445 1.67944 1.20646 0.94370 0.86161 0.96027 1.19428 0.95059 1.10688 1.13934 0.91456 1.25696 1.00528 1.00893 0.97359 1.70193 1.16821 1.47146 1.23309 0.85466 0.78210 0.79146 0.78344 1.20147 1.22399 1.20967 1.45538 1.64929 1.13884 1.08374 1.16975 0.76945 0.85546 0.82888 1.90744 1.53897 1.16740 1.85992 1.25699 1.18356 0.99886 1.00323 1.22329 0.94834 0.92540 0.95815 1.66211 1.18637 1.35370 0.99933 1.28001 0.99642 0.91960 1.01348 1.20755 0.99204 1.04707 0.83567 1.20517 0.93708 0.95765 0.95989 1.22100 0.99139 0.98592 1.01442 1.21860 1.01024 0.96747 0.99959 1.21814 1.01958 1.02553 0.92883 1.83853 1.57010 1.13083 0.98617 0.90060 0.94264 0.90432 0.91360 0.90356 0.97103 0.97007 0.94422 0.94816 0.76042 0.79378 0.87695 0.87523 0.94343 0.91242 0.91102 0.91854 0.92242 0.94490 0.91426 0.91813 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 9.48 71.98 0.68 -3.46 16 2 C 0.12 4.57 2.88 44.99 0.13 4.70 16 3 H 0.04 1.87 7.58 -2.39 -0.02 1.86 16 4 C 0.14 5.19 5.33 86.38 0.46 5.65 16 5 N -0.61 -28.88 2.78 -726.93 -2.02 -30.90 16 6 C 0.17 7.89 7.60 127.77 0.97 8.86 16 7 C -0.26 -14.16 9.66 84.03 0.81 -13.34 16 8 H 0.07 3.58 7.85 -2.91 -0.02 3.56 16 9 C -0.05 -2.78 5.13 84.86 0.44 -2.35 16 10 N -0.93 -54.95 10.66 21.65 0.23 -54.72 16 11 Si 0.96 46.29 29.57 68.60 2.03 48.32 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 14 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 15 N -0.68 -25.27 4.40 -446.49 -1.96 -27.24 16 16 C 0.59 24.36 7.75 86.45 0.67 25.03 16 17 O -0.59 -28.48 16.63 -4.31 -0.07 -28.55 16 18 C -0.32 -11.23 6.48 23.88 0.15 -11.08 16 19 C 0.10 3.23 10.93 84.23 0.92 4.15 16 20 N -0.49 -14.11 9.67 -190.31 -1.84 -15.95 16 21 C 0.06 1.63 4.91 88.46 0.43 2.07 16 22 C -0.04 -0.71 4.86 29.85 0.15 -0.57 16 23 C -0.06 -0.84 0.80 -52.18 -0.04 -0.88 16 24 C -0.16 -2.35 8.02 71.98 0.58 -1.77 16 25 C -0.14 -2.33 8.17 71.98 0.59 -1.74 16 26 C -0.13 -1.34 8.47 71.98 0.61 -0.73 16 27 S 0.22 6.28 21.41 -56.49 -1.21 5.07 16 28 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.04 1.22 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.07 2.41 8.03 -2.38 -0.02 2.39 16 32 H 0.08 2.34 7.86 -2.39 -0.02 2.32 16 33 H 0.01 0.54 6.90 -2.39 -0.02 0.52 16 34 H 0.01 0.58 7.30 -2.39 -0.02 0.56 16 35 H 0.04 1.37 7.84 -2.38 -0.02 1.35 16 36 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 37 H 0.40 13.40 5.88 -92.71 -0.55 12.85 16 38 H 0.19 5.19 7.15 -2.91 -0.02 5.17 16 39 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.04 0.74 6.05 -2.39 -0.01 0.72 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.04 0.80 6.64 -2.39 -0.02 0.78 16 47 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -72.24 402.00 3.10 -69.14 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.39 Total: 20.27 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 7.55 Total: 14.55 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -5.59 Total: -128.80 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.07 Total: -28.55 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Atomic # 16 Polarization: 6.28 SS G_CDS: -1.21 Total: 5.07 kcal Total: -72.24 3.10 -69.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722904129.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.038 kcal (2) G-P(sol) polarization free energy of solvation -72.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds