Wall clock time and date at job start Tue Mar 31 2020 23:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46891 * 111.00283 * 2 1 4 4 C 1.53005 * 109.47190 * 66.04527 * 3 2 1 5 5 C 1.53001 * 109.47315 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.47147 * 179.97438 * 5 4 3 7 7 C 1.46506 * 119.99936 * 89.99619 * 6 5 4 8 8 C 1.34773 * 120.00036 * 270.27655 * 6 5 4 9 9 O 1.21283 * 120.00092 * 359.71995 * 8 6 5 10 10 C 1.50702 * 120.00430 * 179.72648 * 8 6 5 11 11 N 1.46495 * 109.47574 * 179.97438 * 10 8 6 12 12 C 1.34598 * 126.44025 * 124.99741 * 11 10 8 13 13 N 1.31069 * 106.67982 * 180.02562 * 12 11 10 14 14 N 1.28849 * 107.99201 * 359.97438 * 13 12 11 15 15 N 1.28743 * 109.39506 * 359.73732 * 14 13 12 16 16 C 1.46903 * 111.00327 * 236.04386 * 2 1 3 17 17 C 1.50704 * 109.46890 * 293.95957 * 16 2 1 18 18 O 1.21285 * 120.00188 * 359.97438 * 17 16 2 19 19 N 1.34778 * 119.99538 * 179.97438 * 17 16 2 20 20 C 1.37099 * 119.99903 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99897 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00129 * 180.02562 * 20 19 17 23 23 N 1.31412 * 119.99633 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99942 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46908 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47125 * 120.00014 * 24 22 20 27 27 H 1.48504 * 109.46871 * 239.99794 * 24 22 20 28 28 H 1.09005 * 109.47107 * 59.99746 * 1 2 3 29 29 H 1.09001 * 109.47648 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47137 * 300.00049 * 1 2 3 31 31 H 1.08996 * 109.47547 * 306.04874 * 3 2 1 32 32 H 1.09003 * 109.47511 * 186.04109 * 3 2 1 33 33 H 1.09003 * 109.47218 * 59.99856 * 4 3 2 34 34 H 1.08997 * 109.46936 * 300.00406 * 4 3 2 35 35 H 1.08994 * 109.47531 * 59.99665 * 5 4 3 36 36 H 1.09005 * 109.46544 * 299.99600 * 5 4 3 37 37 H 1.08999 * 109.46892 * 90.00398 * 7 6 5 38 38 H 1.09000 * 109.46803 * 209.99571 * 7 6 5 39 39 H 1.09000 * 109.47214 * 330.00364 * 7 6 5 40 40 H 1.09009 * 109.46564 * 299.99895 * 10 8 6 41 41 H 1.09001 * 109.47030 * 59.99569 * 10 8 6 42 42 H 1.08000 * 126.65909 * 359.96134 * 12 11 10 43 43 H 1.09002 * 109.46866 * 53.95685 * 16 2 1 44 44 H 1.08997 * 109.47606 * 173.95976 * 16 2 1 45 45 H 0.97006 * 120.00405 * 359.97438 * 19 17 16 46 46 H 0.97001 * 119.99278 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1792 3.4860 1.3181 6 7 1.8302 4.1430 2.5801 7 6 2.7381 4.0565 3.7266 8 6 0.6712 4.8224 2.6881 9 8 -0.0804 4.8940 1.7389 10 6 0.3092 5.4931 3.9881 11 7 -0.9877 6.1599 3.8491 12 6 -2.0685 5.9771 4.6302 13 7 -3.0081 6.7619 4.1621 14 7 -2.5292 7.3943 3.1468 15 7 -1.3067 7.0373 2.9584 16 6 1.9955 -0.7660 -1.1375 17 6 1.6368 -2.2205 -0.9728 18 8 1.0052 -2.5833 -0.0030 19 7 2.0180 -3.1180 -1.9032 20 6 1.6922 -4.4412 -1.7531 21 1 1.1298 -4.7643 -0.8896 22 6 2.0856 -5.3667 -2.7120 23 7 2.7695 -4.9735 -3.7630 24 14 1.6411 -7.1695 -2.5079 25 1 0.8738 -7.3507 -1.2495 26 1 0.8139 -7.6090 -3.6602 27 1 2.8828 -7.9822 -2.4514 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.5611 1.9273 -0.8308 32 1 3.0797 1.3443 -0.1082 33 1 2.0657 1.5015 2.1493 34 1 0.5472 2.0844 1.4265 35 1 1.7447 4.0417 0.4872 36 1 3.2636 3.4592 1.2097 37 1 3.4401 4.8898 3.6978 38 1 2.1615 4.0990 4.6506 39 1 3.2882 3.1164 3.6843 40 1 0.2507 4.7451 4.7789 41 1 1.0712 6.2304 4.2411 42 1 -2.1467 5.3119 5.4775 43 1 1.5612 -0.3873 -2.0628 44 1 3.0797 -0.6612 -1.1755 45 1 2.5228 -2.8278 -2.6790 46 1 3.0437 -5.6195 -4.4326 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724847477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:20 Heat of formation + Delta-G solvation = 73.085763 kcal Electronic energy + Delta-G solvation = -28555.309536 eV Core-core repulsion = 24326.154489 eV Total energy + Delta-G solvation = -4229.155047 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -44.52756 -40.60231 -38.68434 -37.12670 -36.16503 -35.81955 -33.91679 -32.86028 -32.42296 -31.24516 -29.76734 -28.02237 -27.56485 -26.30325 -24.90894 -24.20849 -23.85521 -22.80773 -20.85598 -20.10467 -19.14786 -18.44703 -18.08709 -17.84578 -17.00741 -16.75333 -16.32190 -16.22627 -15.80980 -15.49681 -15.06481 -14.69794 -14.45332 -14.26201 -14.08543 -13.71002 -13.57587 -13.41443 -13.35829 -13.08128 -13.00227 -12.49509 -12.30719 -12.11209 -12.05062 -11.68400 -11.58692 -11.49674 -11.48631 -11.27058 -11.23334 -10.94283 -10.79618 -10.66560 -10.37325 -10.35302 -10.23447 -9.49714 -9.30288 -8.46159 -7.98829 -7.86338 -6.42775 -3.83487 0.83412 1.35314 1.84284 1.94254 2.30564 3.15236 3.25815 3.32896 3.44150 3.66836 3.79795 3.89616 3.97491 4.04697 4.23416 4.34477 4.39276 4.64965 4.72743 4.97473 5.00679 5.04409 5.05450 5.06245 5.19687 5.24572 5.28117 5.40899 5.56146 5.59436 5.68189 5.73748 5.80085 5.93763 5.96223 6.03115 6.12106 6.27904 6.56945 6.62936 7.26260 7.37476 7.42485 7.54469 8.05847 8.26083 8.61066 9.17388 9.53766 10.05630 10.75076 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.023599 B = 0.001676 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.224725 B =16704.059682 C =17211.675824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.518 5.518 3 C 0.057 3.943 4 C -0.130 4.130 5 C 0.117 3.883 6 N -0.608 5.608 7 C 0.069 3.931 8 C 0.500 3.500 9 O -0.504 6.504 10 C 0.097 3.903 11 N -0.303 5.303 12 C 0.161 3.839 13 N -0.306 5.306 14 N -0.077 5.077 15 N -0.064 5.064 16 C 0.045 3.955 17 C 0.444 3.556 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.014 0.986 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.144 0.856 41 H 0.135 0.865 42 H 0.236 0.764 43 H 0.047 0.953 44 H 0.088 0.912 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.272 21.841 17.450 28.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.242 5.242 3 C -0.072 4.072 4 C -0.169 4.169 5 C -0.006 4.006 6 N -0.342 5.342 7 C -0.074 4.074 8 C 0.284 3.716 9 O -0.377 6.377 10 C -0.029 4.029 11 N -0.105 5.105 12 C -0.138 4.138 13 N -0.153 5.153 14 N -0.071 5.071 15 N -0.050 5.050 16 C -0.086 4.086 17 C 0.230 3.770 18 O -0.462 6.462 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.032 0.968 29 H 0.113 0.887 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.161 0.839 41 H 0.153 0.847 42 H 0.252 0.748 43 H 0.065 0.935 44 H 0.106 0.894 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.121 22.255 16.963 28.062 hybrid contribution 0.588 -1.227 -0.519 1.456 sum 2.708 21.027 16.444 26.831 Atomic orbital electron populations 1.22550 0.86808 1.04287 0.98949 1.61563 1.08722 1.11234 1.42700 1.22022 1.00080 0.89077 0.95998 1.21916 1.02096 0.93957 0.98883 1.21580 1.00619 0.93266 0.85093 1.47766 1.19683 1.52250 1.14519 1.21984 0.94076 1.03821 0.87549 1.20136 0.82268 0.79875 0.89347 1.90881 1.49045 1.59070 1.38721 1.22067 0.82178 0.99111 0.99523 1.48184 1.13131 1.28478 1.20699 1.27770 0.82907 1.02562 1.00514 1.75013 1.24962 1.08342 1.06940 1.78700 0.99939 1.18536 1.09948 1.79020 1.11530 1.03935 1.10550 1.21869 1.00599 0.94177 0.91946 1.19740 0.85409 0.86652 0.85223 1.90478 1.43907 1.80153 1.31675 1.41882 1.49491 1.07382 1.21422 1.19747 1.32845 0.82263 1.07909 0.87872 1.25265 0.96850 1.00583 0.95314 1.69623 1.38167 1.35651 1.10888 0.85801 0.78196 0.81928 0.78423 1.19236 1.20779 1.20757 0.96771 0.88664 0.92276 0.94976 0.90789 0.90702 0.91401 0.89554 0.89728 0.91696 0.91052 0.89658 0.83864 0.84709 0.74793 0.93478 0.89418 0.77498 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 8.96 60.06 0.54 0.91 16 2 N -0.52 -8.54 4.50 -244.38 -1.10 -9.64 16 3 C 0.06 0.69 4.96 -3.83 -0.02 0.67 16 4 C -0.13 -1.29 5.46 -26.73 -0.15 -1.44 16 5 C 0.12 0.87 5.40 -4.04 -0.02 0.85 16 6 N -0.61 -3.43 2.87 -181.57 -0.52 -3.95 16 7 C 0.07 0.09 10.25 59.85 0.61 0.71 16 8 C 0.50 3.78 7.69 -10.99 -0.08 3.70 16 9 O -0.50 -6.64 15.29 5.55 0.08 -6.55 16 10 C 0.10 0.31 5.51 -5.20 -0.03 0.28 16 11 N -0.30 -2.31 3.19 -63.74 -0.20 -2.51 16 12 C 0.16 1.06 12.79 -90.39 -1.16 -0.09 16 13 N -0.31 -3.46 12.36 29.59 0.37 -3.09 16 14 N -0.08 -1.05 13.43 60.35 0.81 -0.23 16 15 N -0.06 -0.78 12.30 60.35 0.74 -0.03 16 16 C 0.05 0.81 5.45 -4.97 -0.03 0.78 16 17 C 0.44 10.45 7.47 -10.98 -0.08 10.37 16 18 O -0.58 -15.48 13.91 5.55 0.08 -15.41 16 19 N -0.57 -14.28 5.29 -10.96 -0.06 -14.33 16 20 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.47 13.05 55.50 0.72 -23.74 16 24 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 28 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 1.94 5.82 -51.93 -0.30 1.63 16 30 H 0.06 0.90 6.47 -51.93 -0.34 0.56 16 31 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 32 H 0.07 0.77 7.93 -51.93 -0.41 0.36 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.82 6.55 -51.93 -0.34 0.48 16 35 H 0.09 0.81 7.42 -51.93 -0.39 0.42 16 36 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 37 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 38 H 0.07 -0.09 6.43 -51.93 -0.33 -0.42 16 39 H 0.08 0.14 8.07 -51.93 -0.42 -0.28 16 40 H 0.14 -0.20 7.34 -51.92 -0.38 -0.58 16 41 H 0.14 0.04 8.11 -51.93 -0.42 -0.38 16 42 H 0.24 0.15 8.06 -52.49 -0.42 -0.28 16 43 H 0.05 0.79 8.12 -51.93 -0.42 0.36 16 44 H 0.09 1.38 7.93 -51.93 -0.41 0.97 16 45 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 46 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 388.45 15.07 5.85 5.85 Total: -1.00 -39.92 388.45 -5.43 -45.35 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.53 Total: 3.57 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -0.65 Total: 8.77 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: 0.76 Total: -57.53 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: 0.16 Total: -21.96 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -39.92 -5.43 -45.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724847477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.434 kcal (2) G-P(sol) polarization free energy of solvation -39.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds