Wall clock time and date at job start Tue Mar 31 2020 22:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 N 1.46506 * 109.47262 * 120.00338 * 2 1 3 5 5 C 1.36938 * 119.99589 * 275.00203 * 4 2 1 6 6 H 1.07999 * 120.00325 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99408 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00325 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99550 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47228 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47239 * 120.00535 * 9 7 5 12 12 H 1.48501 * 109.46793 * 240.00116 * 9 7 5 13 13 C 1.53007 * 109.47211 * 240.00061 * 2 1 3 14 14 H 1.08997 * 109.46878 * 175.00333 * 13 2 1 15 15 C 1.52999 * 109.47285 * 295.00062 * 13 2 1 16 16 N 1.46498 * 109.46631 * 55.00210 * 13 2 1 17 17 C 1.34780 * 119.99869 * 155.00171 * 16 13 2 18 18 O 1.21684 * 119.99764 * 359.97438 * 17 16 13 19 19 C 1.46679 * 120.00381 * 179.97438 * 17 16 13 20 20 C 1.35663 * 126.12706 * 0.02820 * 19 17 16 21 21 N 1.30946 * 114.19108 * 180.02562 * 20 19 17 22 22 C 1.29425 * 117.36349 * 359.97438 * 21 20 19 23 23 C 1.50699 * 124.80357 * 180.02562 * 22 21 20 24 24 C 1.53003 * 109.46790 * 89.97754 * 23 22 21 25 25 C 1.52997 * 109.47090 * 60.00235 * 24 23 22 26 26 C 1.53002 * 109.46955 * 179.97438 * 24 23 22 27 27 C 1.52992 * 109.47409 * 299.99839 * 24 23 22 28 28 S 1.70953 * 110.38900 * 359.72793 * 22 21 20 29 29 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47093 * 299.99896 * 1 2 3 31 31 H 1.09002 * 109.47121 * 59.99683 * 1 2 3 32 32 H 0.96995 * 120.00050 * 94.72411 * 4 2 1 33 33 H 0.97000 * 119.99693 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47061 * 300.00136 * 15 13 2 35 35 H 1.09005 * 109.46852 * 59.99443 * 15 13 2 36 36 H 1.08993 * 109.47017 * 179.97438 * 15 13 2 37 37 H 0.96993 * 120.00207 * 334.99724 * 16 13 2 38 38 H 1.08001 * 122.90686 * 0.02964 * 20 19 17 39 39 H 1.09006 * 109.47074 * 209.97528 * 23 22 21 40 40 H 1.08993 * 109.47223 * 329.97519 * 23 22 21 41 41 H 1.08997 * 109.47698 * 59.99909 * 25 24 23 42 42 H 1.09002 * 109.47205 * 179.97438 * 25 24 23 43 43 H 1.09002 * 109.47280 * 299.99660 * 25 24 23 44 44 H 1.09006 * 109.47033 * 59.99919 * 26 24 23 45 45 H 1.08996 * 109.47161 * 179.97438 * 26 24 23 46 46 H 1.09002 * 109.47243 * 300.00506 * 26 24 23 47 47 H 1.09004 * 109.47044 * 59.99897 * 27 24 23 48 48 H 1.08996 * 109.47446 * 180.02562 * 27 24 23 49 49 H 1.09001 * 109.46934 * 300.00678 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1491 -0.0076 2.3758 6 1 1.8926 1.0404 2.4242 7 6 2.6113 -0.6622 3.5092 8 7 2.9244 -1.9392 3.4501 9 14 2.7904 0.2699 5.1182 10 1 2.3764 1.6822 4.9208 11 1 1.9293 -0.3580 6.1524 12 1 4.2073 0.2260 5.5606 13 6 2.0400 -0.7213 -1.2493 14 1 3.1263 -0.6444 -1.2951 15 6 1.6353 -2.1955 -1.1881 16 7 1.4559 -0.1035 -2.4423 17 6 2.0913 -0.1936 -3.6276 18 8 3.1503 -0.7877 -3.7065 19 6 1.5062 0.4243 -4.8223 20 6 0.3386 1.1129 -4.8763 21 7 0.0370 1.5653 -6.0676 22 6 0.8660 1.3101 -7.0282 23 6 0.6861 1.7486 -8.4587 24 6 1.3331 3.1209 -8.6566 25 6 2.8261 3.0321 -8.3342 26 6 1.1511 3.5658 -10.1091 27 6 0.6696 4.1367 -7.7246 28 16 2.1978 0.4122 -6.4429 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.2453 -1.6328 1.1535 33 1 3.2471 -2.3966 4.2423 34 1 2.0699 -2.6550 -0.3003 35 1 0.5489 -2.2724 -1.1421 36 1 1.9982 -2.7091 -2.0782 37 1 0.6119 0.3702 -2.3793 38 1 -0.2881 1.2741 -4.0116 39 1 1.1589 1.0248 -9.1228 40 1 -0.3775 1.8117 -8.6884 41 1 3.2988 2.3085 -8.9982 42 1 3.2871 4.0097 -8.4756 43 1 2.9562 2.7149 -7.2995 44 1 0.0874 3.6289 -10.3392 45 1 1.6115 4.5437 -10.2500 46 1 1.6240 2.8420 -10.7728 47 1 0.7996 3.8195 -6.6899 48 1 1.1302 5.1144 -7.8659 49 1 -0.3941 4.1998 -7.9542 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725123819.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:34 Heat of formation + Delta-G solvation = 2.154506 kcal Electronic energy + Delta-G solvation = -27060.374689 eV Core-core repulsion = 23342.144296 eV Total energy + Delta-G solvation = -3718.230394 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.47229 -39.50208 -37.80155 -36.90342 -33.99611 -32.24255 -31.24926 -29.54054 -28.24802 -28.18979 -27.73467 -27.58840 -24.76331 -24.43287 -23.39722 -21.84327 -20.05152 -19.53065 -19.09911 -18.07912 -17.57612 -17.14505 -15.90178 -15.54425 -15.15281 -15.04488 -14.93888 -14.59516 -14.54085 -14.18940 -14.05504 -13.72273 -13.46389 -13.39410 -12.90391 -12.80163 -12.48151 -12.47136 -12.15476 -12.04023 -12.01726 -11.76059 -11.67714 -11.36031 -11.33351 -11.19931 -11.11413 -10.97953 -10.85953 -10.54955 -10.33792 -10.25592 -9.99073 -9.76207 -9.64361 -9.61928 -9.14444 -8.97614 -8.86007 -7.03389 -5.80897 -3.10568 0.03291 0.91984 1.45494 2.26368 3.16537 3.28250 3.41479 3.47356 3.49265 3.69617 4.28316 4.32552 4.42504 4.56230 4.71497 4.78934 4.99302 5.00425 5.06694 5.20409 5.29278 5.31191 5.37191 5.39263 5.43347 5.52995 5.56172 5.59099 5.60818 5.65048 5.75081 5.78386 5.82917 5.92019 6.01814 6.02682 6.10656 6.24919 6.35939 6.40539 6.58478 6.68008 6.84711 7.03664 7.35215 7.53542 7.66984 8.20719 8.37441 9.48934 10.03640 10.38547 11.41658 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024380 B = 0.002080 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.220896 B =13457.444996 C =13796.511121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.168 3.832 3 H 0.053 0.947 4 N -0.719 5.719 5 C -0.241 4.241 6 H 0.072 0.928 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.908 3.092 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.291 1.291 13 C 0.137 3.863 14 H 0.091 0.909 15 C -0.160 4.160 16 N -0.705 5.705 17 C 0.590 3.410 18 O -0.536 6.536 19 C -0.291 4.291 20 C 0.089 3.911 21 N -0.472 5.472 22 C 0.045 3.955 23 C -0.038 4.038 24 C -0.064 4.064 25 C -0.155 4.155 26 C -0.139 4.139 27 C -0.140 4.140 28 S 0.226 5.774 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.031 0.969 32 H 0.387 0.613 33 H 0.255 0.745 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.398 0.602 38 H 0.180 0.820 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.013 8.761 -28.296 30.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.057 3.943 3 H 0.071 0.929 4 N -0.362 5.362 5 C -0.372 4.372 6 H 0.090 0.910 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.739 3.261 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.218 1.218 13 C 0.033 3.967 14 H 0.109 0.891 15 C -0.218 4.218 16 N -0.357 5.357 17 C 0.374 3.626 18 O -0.414 6.414 19 C -0.416 4.416 20 C -0.070 4.070 21 N -0.187 5.187 22 C -0.230 4.230 23 C -0.078 4.078 24 C -0.065 4.065 25 C -0.212 4.212 26 C -0.197 4.197 27 C -0.198 4.198 28 S 0.484 5.516 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.223 0.777 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.234 0.766 38 H 0.197 0.803 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.073 0.927 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.760 8.321 -28.795 30.349 hybrid contribution -0.931 0.486 1.915 2.184 sum -5.692 8.807 -26.880 28.853 Atomic orbital electron populations 1.22550 0.99284 1.01341 0.99767 1.20365 0.92210 0.95642 0.86080 0.92924 1.42454 1.78284 1.10697 1.04794 1.19263 1.36846 0.93974 0.87078 0.91042 1.24754 1.01932 0.96012 0.98142 1.69666 1.50675 1.08652 1.28881 0.86109 0.77342 0.78769 0.83894 1.20556 1.21874 1.21831 1.21419 0.99164 0.92965 0.83166 0.89111 1.22151 1.01620 0.95613 1.02428 1.46031 1.25574 1.56288 1.07848 1.16732 0.84246 0.79701 0.81934 1.90851 1.21956 1.43158 1.85438 1.25902 1.02673 1.13014 0.99992 1.22178 0.94195 0.94948 0.95657 1.66140 1.31054 1.22259 0.99199 1.27431 0.94851 1.00066 1.00641 1.20487 1.03577 0.97013 0.86765 1.20531 0.95721 0.93768 0.96506 1.22089 0.94623 1.02475 1.02012 1.21848 1.02036 1.01504 0.94288 1.21875 1.00474 0.97875 0.99545 1.84105 1.21761 1.47047 0.98642 0.92707 0.92236 0.94982 0.77743 0.93463 0.90285 0.92431 0.93031 0.76572 0.80314 0.89394 0.88424 0.92181 0.91921 0.92426 0.92300 0.92130 0.92383 0.92211 0.92744 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 9.01 37.16 0.33 -2.43 16 2 C 0.17 3.18 2.93 -67.92 -0.20 2.98 16 3 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 4 N -0.72 -17.38 5.03 -53.42 -0.27 -17.65 16 5 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -27.71 13.06 55.49 0.72 -26.99 16 9 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 C 0.14 2.35 2.62 -67.93 -0.18 2.17 16 14 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 15 C -0.16 -2.69 9.00 37.16 0.33 -2.36 16 16 N -0.70 -9.91 4.97 -55.11 -0.27 -10.18 16 17 C 0.59 8.93 7.75 -12.85 -0.10 8.83 16 18 O -0.54 -10.04 16.63 5.20 0.09 -9.96 16 19 C -0.29 -3.59 6.48 -37.10 -0.24 -3.83 16 20 C 0.09 0.94 10.93 -18.85 -0.21 0.74 16 21 N -0.47 -4.99 9.66 -11.50 -0.11 -5.10 16 22 C 0.04 0.41 4.93 -13.29 -0.07 0.34 16 23 C -0.04 -0.24 4.86 -27.88 -0.14 -0.38 16 24 C -0.06 -0.38 0.80 -154.51 -0.12 -0.51 16 25 C -0.15 -0.99 8.01 37.16 0.30 -0.70 16 26 C -0.14 -0.63 8.47 37.16 0.31 -0.31 16 27 C -0.14 -1.01 8.17 37.15 0.30 -0.71 16 28 S 0.23 2.33 21.35 -107.50 -2.30 0.04 16 29 H 0.05 0.91 6.56 -51.93 -0.34 0.57 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.03 0.40 6.29 -51.93 -0.33 0.07 16 32 H 0.39 9.89 5.77 -40.82 -0.24 9.65 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.08 1.48 6.29 -51.93 -0.33 1.15 16 35 H 0.06 0.89 6.56 -51.93 -0.34 0.55 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.40 4.55 5.29 -40.82 -0.22 4.33 16 38 H 0.18 1.49 7.15 -52.49 -0.38 1.11 16 39 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.46 6.01 -51.93 -0.31 0.14 16 44 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 46 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.06 0.55 6.64 -51.93 -0.34 0.20 16 48 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 398.90 15.07 6.01 6.01 Total: -1.00 -32.06 398.90 -8.89 -40.94 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -7.83 Total: 9.00 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 0.09 Total: -3.26 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: 0.07 Total: -59.91 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.30 Total: 0.04 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.06 -8.89 -40.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725123819.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.099 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds