Wall clock time and date at job start Tue Mar 31 2020 22:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 N 1.46506 * 109.47262 * 120.00338 * 2 1 3 5 5 C 1.36938 * 119.99589 * 275.00203 * 4 2 1 6 6 H 1.07999 * 120.00325 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99408 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00325 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99550 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47228 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47239 * 120.00535 * 9 7 5 12 12 H 1.48501 * 109.46793 * 240.00116 * 9 7 5 13 13 C 1.53007 * 109.47211 * 240.00061 * 2 1 3 14 14 H 1.08997 * 109.46878 * 175.00333 * 13 2 1 15 15 C 1.52999 * 109.47285 * 295.00062 * 13 2 1 16 16 N 1.46498 * 109.46631 * 55.00210 * 13 2 1 17 17 C 1.34780 * 119.99869 * 155.00171 * 16 13 2 18 18 O 1.21684 * 119.99764 * 359.97438 * 17 16 13 19 19 C 1.46679 * 120.00381 * 179.97438 * 17 16 13 20 20 C 1.35663 * 126.12706 * 0.02820 * 19 17 16 21 21 N 1.30946 * 114.19108 * 180.02562 * 20 19 17 22 22 C 1.29425 * 117.36349 * 359.97438 * 21 20 19 23 23 C 1.50699 * 124.80357 * 180.02562 * 22 21 20 24 24 C 1.53003 * 109.46790 * 89.97754 * 23 22 21 25 25 C 1.52997 * 109.47090 * 60.00235 * 24 23 22 26 26 C 1.53002 * 109.46955 * 179.97438 * 24 23 22 27 27 C 1.52992 * 109.47409 * 299.99839 * 24 23 22 28 28 S 1.70953 * 110.38900 * 359.72793 * 22 21 20 29 29 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47093 * 299.99896 * 1 2 3 31 31 H 1.09002 * 109.47121 * 59.99683 * 1 2 3 32 32 H 0.96995 * 120.00050 * 94.72411 * 4 2 1 33 33 H 0.97000 * 119.99693 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47061 * 300.00136 * 15 13 2 35 35 H 1.09005 * 109.46852 * 59.99443 * 15 13 2 36 36 H 1.08993 * 109.47017 * 179.97438 * 15 13 2 37 37 H 0.96993 * 120.00207 * 334.99724 * 16 13 2 38 38 H 1.08001 * 122.90686 * 0.02964 * 20 19 17 39 39 H 1.09006 * 109.47074 * 209.97528 * 23 22 21 40 40 H 1.08993 * 109.47223 * 329.97519 * 23 22 21 41 41 H 1.08997 * 109.47698 * 59.99909 * 25 24 23 42 42 H 1.09002 * 109.47205 * 179.97438 * 25 24 23 43 43 H 1.09002 * 109.47280 * 299.99660 * 25 24 23 44 44 H 1.09006 * 109.47033 * 59.99919 * 26 24 23 45 45 H 1.08996 * 109.47161 * 179.97438 * 26 24 23 46 46 H 1.09002 * 109.47243 * 300.00506 * 26 24 23 47 47 H 1.09004 * 109.47044 * 59.99897 * 27 24 23 48 48 H 1.08996 * 109.47446 * 180.02562 * 27 24 23 49 49 H 1.09001 * 109.46934 * 300.00678 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1491 -0.0076 2.3758 6 1 1.8926 1.0404 2.4242 7 6 2.6113 -0.6622 3.5092 8 7 2.9244 -1.9392 3.4501 9 14 2.7904 0.2699 5.1182 10 1 2.3764 1.6822 4.9208 11 1 1.9293 -0.3580 6.1524 12 1 4.2073 0.2260 5.5606 13 6 2.0400 -0.7213 -1.2493 14 1 3.1263 -0.6444 -1.2951 15 6 1.6353 -2.1955 -1.1881 16 7 1.4559 -0.1035 -2.4423 17 6 2.0913 -0.1936 -3.6276 18 8 3.1503 -0.7877 -3.7065 19 6 1.5062 0.4243 -4.8223 20 6 0.3386 1.1129 -4.8763 21 7 0.0370 1.5653 -6.0676 22 6 0.8660 1.3101 -7.0282 23 6 0.6861 1.7486 -8.4587 24 6 1.3331 3.1209 -8.6566 25 6 2.8261 3.0321 -8.3342 26 6 1.1511 3.5658 -10.1091 27 6 0.6696 4.1367 -7.7246 28 16 2.1978 0.4122 -6.4429 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.2453 -1.6328 1.1535 33 1 3.2471 -2.3966 4.2423 34 1 2.0699 -2.6550 -0.3003 35 1 0.5489 -2.2724 -1.1421 36 1 1.9982 -2.7091 -2.0782 37 1 0.6119 0.3702 -2.3793 38 1 -0.2881 1.2741 -4.0116 39 1 1.1589 1.0248 -9.1228 40 1 -0.3775 1.8117 -8.6884 41 1 3.2988 2.3085 -8.9982 42 1 3.2871 4.0097 -8.4756 43 1 2.9562 2.7149 -7.2995 44 1 0.0874 3.6289 -10.3392 45 1 1.6115 4.5437 -10.2500 46 1 1.6240 2.8420 -10.7728 47 1 0.7996 3.8195 -6.6899 48 1 1.1302 5.1144 -7.8659 49 1 -0.3941 4.1998 -7.9542 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725123819.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:33 Heat of formation + Delta-G solvation = -18.215790 kcal Electronic energy + Delta-G solvation = -27061.258012 eV Core-core repulsion = 23342.144296 eV Total energy + Delta-G solvation = -3719.113716 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.43553 -40.56972 -38.53895 -38.24907 -35.66275 -33.78539 -32.40209 -30.88201 -29.83648 -29.08312 -28.19383 -28.08156 -26.18251 -25.55734 -24.95179 -22.98688 -20.96951 -20.83354 -19.99857 -19.44566 -18.82702 -18.29616 -16.89432 -16.71150 -16.55458 -16.09144 -16.03317 -15.66223 -15.56326 -15.30640 -15.14050 -15.05739 -14.61059 -14.45963 -13.97790 -13.93588 -13.52174 -13.39901 -13.12475 -13.00665 -12.89953 -12.83704 -12.67276 -12.64690 -12.58141 -12.51256 -12.08455 -12.06738 -11.90010 -11.71356 -11.68851 -11.63286 -11.59132 -11.40586 -10.97455 -10.61129 -10.51476 -10.20887 -9.87164 -9.04056 -7.94217 -5.23011 -0.81697 0.09685 0.65055 1.37065 1.47907 1.48597 1.58250 2.08056 2.09455 2.57711 3.00472 3.39720 3.65011 3.76372 3.82534 3.86853 3.91476 3.96408 4.05222 4.12751 4.22861 4.30145 4.51735 4.58034 4.59638 4.67181 4.73442 4.84149 4.84636 4.89651 4.93554 4.94129 4.96241 5.00488 5.08317 5.10695 5.18576 5.22846 5.22935 5.36826 5.42475 5.44959 5.51089 5.53455 5.62178 6.27938 6.37501 6.55306 7.05485 7.34704 8.08363 8.31610 9.29430 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024380 B = 0.002080 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.220896 B =13457.444996 C =13796.511121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.166 3.834 3 H 0.049 0.951 4 N -0.733 5.733 5 C -0.236 4.236 6 H 0.078 0.922 7 C -0.077 4.077 8 N -0.969 5.969 9 Si 0.971 3.029 10 H -0.265 1.265 11 H -0.294 1.294 12 H -0.297 1.297 13 C 0.152 3.848 14 H 0.060 0.940 15 C -0.151 4.151 16 N -0.692 5.692 17 C 0.593 3.407 18 O -0.580 6.580 19 C -0.326 4.326 20 C 0.107 3.893 21 N -0.489 5.489 22 C 0.066 3.934 23 C -0.042 4.042 24 C -0.059 4.059 25 C -0.157 4.157 26 C -0.136 4.136 27 C -0.139 4.139 28 S 0.223 5.777 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.377 0.623 33 H 0.250 0.750 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.413 0.587 38 H 0.202 0.798 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.039 0.961 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.037 0.963 48 H 0.057 0.943 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.815 10.486 -30.523 33.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.057 3.943 3 H 0.067 0.933 4 N -0.376 5.376 5 C -0.367 4.367 6 H 0.096 0.904 7 C -0.269 4.269 8 N -0.620 5.620 9 Si 0.801 3.199 10 H -0.189 1.189 11 H -0.222 1.222 12 H -0.225 1.225 13 C 0.046 3.954 14 H 0.079 0.921 15 C -0.209 4.209 16 N -0.346 5.346 17 C 0.379 3.621 18 O -0.461 6.461 19 C -0.450 4.450 20 C -0.052 4.052 21 N -0.203 5.203 22 C -0.208 4.208 23 C -0.082 4.082 24 C -0.061 4.061 25 C -0.214 4.214 26 C -0.193 4.193 27 C -0.197 4.197 28 S 0.483 5.517 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.211 0.789 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.252 0.748 38 H 0.219 0.781 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.058 0.942 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.057 0.943 48 H 0.076 0.924 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.608 10.100 -31.066 33.329 hybrid contribution -0.403 0.049 2.417 2.451 sum -7.011 10.150 -28.650 31.192 Atomic orbital electron populations 1.22378 0.96466 1.01780 1.01299 1.20531 0.93986 0.94906 0.84918 0.93335 1.42649 1.78713 1.10449 1.05763 1.19639 1.34824 0.94280 0.87998 0.90387 1.25543 1.02982 0.96911 1.01466 1.69821 1.52629 1.10196 1.29324 0.85097 0.76607 0.78267 0.79924 1.18927 1.22153 1.22455 1.20965 0.97528 0.93211 0.83703 0.92146 1.22042 1.02480 0.95133 1.01238 1.45740 1.25957 1.56109 1.06751 1.17031 0.83543 0.78875 0.82621 1.90828 1.23943 1.45233 1.86128 1.25581 1.04133 1.15590 0.99719 1.22549 0.93319 0.92914 0.96430 1.66260 1.31580 1.23062 0.99409 1.27999 0.93467 0.97762 1.01540 1.20739 1.04588 0.97716 0.85191 1.20517 0.95100 0.93100 0.97386 1.22116 0.95202 1.02973 1.01132 1.21821 1.02648 1.01863 0.92982 1.21864 1.00841 0.98441 0.98515 1.84115 1.22370 1.47361 0.97872 0.92821 0.93606 0.90543 0.78909 0.94100 0.92608 0.90685 0.93034 0.74757 0.78106 0.87260 0.87378 0.91072 0.91605 0.94221 0.91679 0.91962 0.91309 0.94346 0.92388 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.89 9.01 71.98 0.65 -4.24 16 2 C 0.17 6.19 2.93 44.99 0.13 6.33 16 3 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 4 N -0.73 -35.93 5.03 -322.92 -1.63 -37.56 16 5 C -0.24 -12.80 9.93 84.03 0.83 -11.96 16 6 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 7 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 8 N -0.97 -59.15 13.06 21.65 0.28 -58.87 16 9 Si 0.97 46.02 29.55 68.60 2.03 48.04 16 10 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 11 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 12 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 13 C 0.15 5.21 2.62 44.99 0.12 5.33 16 14 H 0.06 2.47 7.58 -2.39 -0.02 2.45 16 15 C -0.15 -5.11 9.00 71.98 0.65 -4.46 16 16 N -0.69 -18.74 4.97 -446.50 -2.22 -20.96 16 17 C 0.59 17.82 7.75 86.45 0.67 18.49 16 18 O -0.58 -22.29 16.63 -4.30 -0.07 -22.36 16 19 C -0.33 -7.72 6.48 23.88 0.15 -7.56 16 20 C 0.11 2.06 10.93 84.23 0.92 2.98 16 21 N -0.49 -9.27 9.66 -190.30 -1.84 -11.11 16 22 C 0.07 1.08 4.93 88.46 0.44 1.52 16 23 C -0.04 -0.42 4.86 29.85 0.15 -0.27 16 24 C -0.06 -0.57 0.80 -52.18 -0.04 -0.61 16 25 C -0.16 -1.74 8.01 71.98 0.58 -1.17 16 26 C -0.14 -0.82 8.47 71.98 0.61 -0.21 16 27 C -0.14 -1.76 8.17 71.98 0.59 -1.17 16 28 S 0.22 4.41 21.35 -56.49 -1.21 3.20 16 29 H 0.05 1.67 6.56 -2.39 -0.02 1.66 16 30 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 1.65 6.29 -2.39 -0.02 1.63 16 32 H 0.38 19.87 5.77 -92.71 -0.54 19.34 16 33 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 34 H 0.06 2.16 6.29 -2.39 -0.02 2.15 16 35 H 0.07 2.25 6.56 -2.38 -0.02 2.23 16 36 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.41 8.40 5.29 -92.71 -0.49 7.91 16 38 H 0.20 2.71 7.15 -2.91 -0.02 2.68 16 39 H 0.11 0.67 8.14 -2.38 -0.02 0.66 16 40 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.04 0.59 6.01 -2.39 -0.01 0.57 16 44 H 0.06 0.33 8.14 -2.38 -0.02 0.32 16 45 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 47 H 0.04 0.65 6.64 -2.38 -0.02 0.63 16 48 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -70.90 398.90 2.19 -68.71 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: -0.06 Total: 31.84 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 6.91 Total: -0.93 kcal Atomic # 7 Polarization: -123.09 SS G_CDS: -5.40 Total: -128.49 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.07 Total: -22.36 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -1.21 Total: 3.20 kcal Total: -70.90 2.19 -68.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725123819.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.491 kcal (2) G-P(sol) polarization free energy of solvation -70.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds