Wall clock time and date at job start Tue Mar 31 2020 22:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47179 * 2 1 4 4 N 1.46504 * 109.47454 * 239.99840 * 2 1 3 5 5 C 1.36934 * 119.99984 * 84.99926 * 4 2 1 6 6 H 1.08002 * 120.00284 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00112 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00111 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47081 * 90.00018 * 9 7 5 11 11 H 1.48503 * 109.47037 * 209.99887 * 9 7 5 12 12 H 1.48495 * 109.47249 * 329.99944 * 9 7 5 13 13 C 1.53000 * 109.47345 * 119.99584 * 2 1 3 14 14 H 1.09002 * 109.47398 * 185.00327 * 13 2 1 15 15 C 1.52997 * 109.47060 * 65.00157 * 13 2 1 16 16 N 1.46500 * 109.47023 * 305.00398 * 13 2 1 17 17 C 1.34777 * 120.00075 * 204.99547 * 16 13 2 18 18 O 1.21692 * 119.99797 * 0.02562 * 17 16 13 19 19 C 1.46681 * 120.00185 * 179.97438 * 17 16 13 20 20 C 1.35660 * 126.12856 * 0.02562 * 19 17 16 21 21 N 1.30946 * 114.19195 * 180.02562 * 20 19 17 22 22 C 1.29430 * 117.36251 * 0.02562 * 21 20 19 23 23 C 1.50696 * 124.80500 * 179.97438 * 22 21 20 24 24 C 1.53006 * 109.46979 * 89.98024 * 23 22 21 25 25 C 1.52996 * 109.47446 * 60.00074 * 24 23 22 26 26 C 1.53001 * 109.47211 * 180.02562 * 24 23 22 27 27 C 1.52999 * 109.46932 * 299.99738 * 24 23 22 28 28 S 1.70964 * 110.39039 * 359.72531 * 22 21 20 29 29 H 1.09002 * 109.47179 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47639 * 300.00140 * 1 2 3 31 31 H 1.09004 * 109.47135 * 60.00286 * 1 2 3 32 32 H 0.97001 * 119.99798 * 264.99745 * 4 2 1 33 33 H 0.97004 * 119.99901 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47533 * 59.99948 * 15 13 2 35 35 H 1.08996 * 109.47853 * 180.02562 * 15 13 2 36 36 H 1.09002 * 109.47153 * 300.00319 * 15 13 2 37 37 H 0.96997 * 120.00274 * 24.99518 * 16 13 2 38 38 H 1.07999 * 122.90900 * 0.04565 * 20 19 17 39 39 H 1.09005 * 109.47351 * 209.97749 * 23 22 21 40 40 H 1.08993 * 109.47559 * 329.97802 * 23 22 21 41 41 H 1.09001 * 109.47452 * 59.99739 * 25 24 23 42 42 H 1.08996 * 109.47254 * 180.02562 * 25 24 23 43 43 H 1.09001 * 109.46816 * 300.00367 * 25 24 23 44 44 H 1.09001 * 109.47370 * 59.99355 * 26 24 23 45 45 H 1.08992 * 109.47417 * 179.97438 * 26 24 23 46 46 H 1.09004 * 109.46984 * 300.00239 * 26 24 23 47 47 H 1.09001 * 109.46796 * 59.99960 * 27 24 23 48 48 H 1.08997 * 109.47253 * 180.02562 * 27 24 23 49 49 H 1.08996 * 109.47248 * 300.00602 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1492 -0.0076 -2.3757 6 1 1.8919 1.0402 -2.4244 7 6 2.6114 -0.6620 -3.5092 8 7 2.7367 -0.0056 -4.6431 9 14 3.0558 -2.4745 -3.4252 10 1 1.8584 -3.2930 -3.7441 11 1 4.1308 -2.7666 -4.4072 12 1 3.5313 -2.8047 -2.0578 13 6 2.0400 -0.7211 1.2493 14 1 3.1263 -0.6442 1.2952 15 6 1.6353 -2.1954 1.1881 16 7 1.4558 -0.1035 2.4424 17 6 2.0911 -0.1936 3.6276 18 8 3.1503 -0.7876 3.7065 19 6 1.5065 0.4253 4.8220 20 6 0.3389 1.1138 4.8760 21 7 0.0383 1.5680 6.0668 22 6 0.8681 1.3143 7.0272 23 6 0.6895 1.7550 8.4572 24 6 -0.0793 0.6810 9.2295 25 6 0.7050 -0.6321 9.1948 26 6 -0.2612 1.1287 10.6812 27 6 -1.4512 0.4730 8.5849 28 16 2.1921 0.4026 6.4452 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 2.2491 -1.6318 -1.1525 33 1 3.0594 -0.4631 -5.4353 34 1 2.0699 -2.6550 0.3004 35 1 1.9982 -2.7091 2.0782 36 1 0.5490 -2.2723 1.1421 37 1 0.6117 0.3703 2.3794 38 1 -0.2888 1.2733 4.0117 39 1 1.6669 1.9033 8.9165 40 1 0.1308 2.6905 8.4821 41 1 1.6824 -0.4839 9.6540 42 1 0.1571 -1.3973 9.7446 43 1 0.8343 -0.9508 8.1604 44 1 -0.8202 2.0641 10.7057 45 1 -0.8093 0.3638 11.2314 46 1 0.7160 1.2773 11.1408 47 1 -1.3219 0.1543 7.5505 48 1 -1.9991 -0.2918 9.1353 49 1 -2.0099 1.4085 8.6096 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725123823.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:40 Heat of formation + Delta-G solvation = 6.545949 kcal Electronic energy + Delta-G solvation = -27131.337583 eV Core-core repulsion = 23413.297617 eV Total energy + Delta-G solvation = -3718.039966 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.52899 -39.58917 -37.84792 -37.07329 -34.11726 -32.27849 -31.36608 -29.82846 -28.67898 -28.27561 -27.77376 -27.62442 -24.82241 -24.51842 -23.20440 -21.80192 -20.09215 -19.60768 -19.21148 -18.25722 -17.88442 -17.23519 -15.95248 -15.67045 -15.19564 -15.14526 -14.98311 -14.71047 -14.56738 -14.25447 -14.08756 -13.78582 -13.67490 -13.42341 -12.92159 -12.76650 -12.66722 -12.50451 -12.22690 -12.18681 -12.07077 -11.83094 -11.80622 -11.59255 -11.39344 -11.23790 -11.16642 -11.14763 -10.93769 -10.67923 -10.41799 -10.35095 -10.07802 -9.76368 -9.66646 -9.60651 -9.19837 -9.00751 -8.95955 -7.35330 -5.81111 -3.17991 -0.01514 0.87426 1.40966 2.21542 3.09173 3.18927 3.35322 3.37875 3.43705 3.65735 4.24822 4.29147 4.38748 4.55409 4.64495 4.74940 4.93923 4.96558 5.03379 5.14928 5.17379 5.24029 5.26694 5.33591 5.34679 5.35835 5.49747 5.52279 5.52914 5.57842 5.60815 5.71046 5.79049 5.85539 5.88229 5.95317 5.97953 6.08421 6.20667 6.24687 6.40814 6.55797 6.67234 6.92677 7.31096 7.43856 7.93392 8.11937 8.37162 9.14684 9.86929 10.05379 11.36784 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030293 B = 0.002123 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.072385 B =13188.398264 C =13450.628334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.173 3.827 3 H 0.062 0.938 4 N -0.743 5.743 5 C -0.246 4.246 6 H 0.091 0.909 7 C 0.007 3.993 8 N -0.931 5.931 9 Si 0.881 3.119 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.276 1.276 13 C 0.134 3.866 14 H 0.092 0.908 15 C -0.162 4.162 16 N -0.705 5.705 17 C 0.591 3.409 18 O -0.536 6.536 19 C -0.293 4.293 20 C 0.090 3.910 21 N -0.472 5.472 22 C 0.046 3.954 23 C -0.038 4.038 24 C -0.063 4.063 25 C -0.154 4.154 26 C -0.140 4.140 27 C -0.140 4.140 28 S 0.226 5.774 29 H 0.053 0.947 30 H 0.035 0.965 31 H 0.064 0.936 32 H 0.363 0.637 33 H 0.260 0.740 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.399 0.601 38 H 0.180 0.820 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.053 0.947 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.368 1.777 31.909 32.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.063 3.937 3 H 0.080 0.920 4 N -0.387 5.387 5 C -0.375 4.375 6 H 0.109 0.891 7 C -0.189 4.189 8 N -0.578 5.578 9 Si 0.711 3.289 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.202 1.202 13 C 0.030 3.970 14 H 0.110 0.890 15 C -0.221 4.221 16 N -0.357 5.357 17 C 0.376 3.624 18 O -0.414 6.414 19 C -0.418 4.418 20 C -0.068 4.068 21 N -0.186 5.186 22 C -0.228 4.228 23 C -0.079 4.079 24 C -0.065 4.065 25 C -0.212 4.212 26 C -0.197 4.197 27 C -0.198 4.198 28 S 0.485 5.515 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.198 0.802 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.236 0.764 38 H 0.197 0.803 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.115 1.408 32.357 32.960 hybrid contribution -0.714 -0.901 -1.111 1.598 sum -6.828 0.507 31.246 31.988 Atomic orbital electron populations 1.22512 0.98727 1.01371 1.00355 1.20329 0.92425 0.95936 0.85032 0.92008 1.42785 1.79777 1.09556 1.06624 1.19036 1.37441 0.95706 0.85344 0.89080 1.24657 1.01177 0.97516 0.95554 1.69696 1.52353 1.35566 1.00235 0.86611 0.78254 0.86827 0.77215 1.20976 1.21607 1.20222 1.21417 0.99344 0.92759 0.83506 0.88961 1.22178 1.01888 0.95851 1.02144 1.45971 1.25671 1.56379 1.07729 1.16728 0.84177 0.79611 0.81923 1.90852 1.21916 1.43206 1.85455 1.25865 1.03131 1.13044 0.99744 1.22185 0.94156 0.94800 0.95666 1.66146 1.30625 1.22675 0.99195 1.27443 0.94616 1.00353 1.00400 1.20497 1.02151 0.99814 0.85443 1.20532 0.95969 0.94671 0.95346 1.22086 1.00114 0.96605 1.02371 1.21848 1.01972 1.01555 0.94317 1.21876 0.95171 1.01869 1.00845 1.84113 1.22584 1.46757 0.98081 0.92817 0.94623 0.91695 0.80203 0.92982 0.91197 0.92651 0.92044 0.76402 0.80277 0.89357 0.88362 0.92162 0.91932 0.92477 0.92265 0.92132 0.92370 0.92251 0.92758 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 9.01 37.15 0.33 -2.30 16 2 C 0.17 3.13 2.93 -67.93 -0.20 2.93 16 3 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 4 N -0.74 -16.88 4.84 -53.43 -0.26 -17.14 16 5 C -0.25 -6.73 10.41 -15.06 -0.16 -6.89 16 6 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 7 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 8 N -0.93 -28.87 13.97 55.49 0.78 -28.09 16 9 Si 0.88 21.86 27.73 -169.99 -4.71 17.15 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 12 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 13 C 0.13 2.16 2.62 -67.93 -0.18 1.98 16 14 H 0.09 1.69 7.58 -51.93 -0.39 1.30 16 15 C -0.16 -2.50 9.00 37.16 0.33 -2.17 16 16 N -0.70 -9.35 4.97 -55.11 -0.27 -9.62 16 17 C 0.59 8.55 7.75 -12.85 -0.10 8.45 16 18 O -0.54 -9.64 16.63 5.20 0.09 -9.55 16 19 C -0.29 -3.47 6.48 -37.10 -0.24 -3.71 16 20 C 0.09 0.92 10.93 -18.85 -0.21 0.72 16 21 N -0.47 -4.82 9.66 -11.50 -0.11 -4.94 16 22 C 0.05 0.41 4.93 -13.29 -0.07 0.34 16 23 C -0.04 -0.23 4.86 -27.88 -0.14 -0.37 16 24 C -0.06 -0.36 0.80 -154.51 -0.12 -0.48 16 25 C -0.15 -0.92 8.01 37.16 0.30 -0.63 16 26 C -0.14 -0.59 8.47 37.16 0.31 -0.27 16 27 C -0.14 -0.95 8.17 37.16 0.30 -0.65 16 28 S 0.23 2.24 21.36 -107.50 -2.30 -0.05 16 29 H 0.05 0.82 6.56 -51.93 -0.34 0.48 16 30 H 0.03 0.42 6.29 -51.93 -0.33 0.09 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.36 8.17 3.63 -40.82 -0.15 8.02 16 33 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.07 1.16 6.29 -51.93 -0.33 0.84 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.86 6.56 -51.93 -0.34 0.52 16 37 H 0.40 4.26 5.29 -40.82 -0.22 4.04 16 38 H 0.18 1.40 7.15 -52.49 -0.38 1.03 16 39 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.42 6.01 -51.93 -0.31 0.11 16 44 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 46 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 47 H 0.06 0.51 6.64 -51.93 -0.34 0.17 16 48 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 395.79 15.07 5.96 5.96 Total: -1.00 -32.94 395.79 -8.53 -41.47 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -7.79 Total: 7.75 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 0.08 Total: -2.94 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: 0.13 Total: -59.79 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.15 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.30 Total: -0.05 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.94 -8.53 -41.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725123823.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.020 kcal (2) G-P(sol) polarization free energy of solvation -32.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds