Wall clock time and date at job start Tue Mar 31 2020 22:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47197 * 2 1 4 4 C 1.52996 * 109.47045 * 240.00139 * 2 1 3 5 5 N 1.46499 * 109.47222 * 184.99784 * 4 2 1 6 6 C 1.34780 * 120.00474 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99211 * 0.02562 * 6 5 4 8 8 C 1.50693 * 120.00143 * 179.72528 * 6 5 4 9 9 C 1.50707 * 109.47012 * 180.27513 * 8 6 5 10 10 C 1.33641 * 122.74685 * 85.02694 * 9 8 6 11 11 S 1.76199 * 107.92276 * 180.02562 * 10 9 8 12 12 C 1.70974 * 90.28352 * 0.02562 * 11 10 9 13 13 C 1.50696 * 124.91763 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.47186 * 239.97456 * 13 12 11 15 15 C 1.53001 * 109.47239 * 359.97127 * 13 12 11 16 16 C 1.53001 * 109.47697 * 119.97345 * 13 12 11 17 17 N 1.29024 * 110.16520 * 359.73206 * 12 11 10 18 18 N 1.46494 * 109.47303 * 120.00164 * 2 1 3 19 19 C 1.46504 * 120.00186 * 59.99558 * 18 2 1 20 20 C 1.36939 * 120.00317 * 240.00364 * 18 2 1 21 21 H 1.08003 * 119.99665 * 21.92928 * 20 18 2 22 22 C 1.38814 * 120.00004 * 201.93985 * 20 18 2 23 23 N 1.31617 * 120.00012 * 12.70555 * 22 20 18 24 24 Si 1.86803 * 119.99754 * 192.71154 * 22 20 18 25 25 H 1.48502 * 109.47044 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47355 * 119.99885 * 24 22 20 27 27 H 1.48500 * 109.46810 * 239.99666 * 24 22 20 28 28 H 1.09000 * 109.47043 * 59.99650 * 1 2 3 29 29 H 1.08996 * 109.47197 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47022 * 300.00050 * 1 2 3 31 31 H 1.09007 * 109.47337 * 65.00066 * 4 2 1 32 32 H 1.08999 * 109.47588 * 304.99856 * 4 2 1 33 33 H 0.97004 * 119.99834 * 0.02562 * 5 4 2 34 34 H 1.08998 * 109.47463 * 300.27199 * 8 6 5 35 35 H 1.09000 * 109.47001 * 60.28227 * 8 6 5 36 36 H 1.07998 * 126.03831 * 0.02562 * 10 9 8 37 37 H 1.09006 * 109.46796 * 59.99667 * 14 13 12 38 38 H 1.08997 * 109.47190 * 179.97438 * 14 13 12 39 39 H 1.09001 * 109.46884 * 299.99689 * 14 13 12 40 40 H 1.09006 * 109.47287 * 60.00016 * 15 13 12 41 41 H 1.08997 * 109.47645 * 180.02562 * 15 13 12 42 42 H 1.09006 * 109.47224 * 300.00628 * 15 13 12 43 43 H 1.09005 * 109.46641 * 59.99826 * 16 13 12 44 44 H 1.08997 * 109.47286 * 180.02562 * 16 13 12 45 45 H 1.09003 * 109.46599 * 300.00611 * 16 13 12 46 46 H 1.09004 * 109.46664 * 94.30962 * 19 18 2 47 47 H 1.08994 * 109.47307 * 214.31418 * 19 18 2 48 48 H 1.09000 * 109.47061 * 334.32195 * 19 18 2 49 49 H 0.97009 * 119.99753 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2492 5 7 3.5000 -0.8263 -1.1906 6 6 4.1730 -1.4291 -2.1908 7 8 3.5698 -1.8841 -3.1395 8 6 5.6753 -1.5317 -2.1334 9 6 6.1781 -2.2378 -3.3662 10 6 6.4150 -1.6019 -4.5175 11 16 6.9842 -2.7910 -5.6865 12 6 6.8463 -4.0251 -4.5112 13 6 7.1769 -5.4771 -4.7421 14 6 5.9298 -6.3292 -4.4975 15 6 7.6509 -5.6691 -6.1841 16 6 8.2854 -5.9073 -3.7793 17 7 6.4240 -3.5321 -3.3961 18 7 2.0183 -0.6906 1.1961 19 6 1.6644 -2.0932 1.4280 20 6 2.8055 -0.0252 2.0976 21 1 2.7847 1.0539 2.1394 22 6 3.6304 -0.7374 2.9573 23 7 3.8497 -2.0183 2.7484 24 14 4.4290 0.1220 4.4110 25 1 4.0260 1.5512 4.4236 26 1 3.9902 -0.5276 5.6722 27 1 5.9061 0.0256 4.2925 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7516 -0.1582 -2.1370 32 1 1.6054 -1.7198 -1.2952 33 1 3.9823 -0.4627 -0.4316 34 1 6.1063 -0.5316 -2.0863 35 1 5.9674 -2.0954 -1.2473 36 1 6.2812 -0.5458 -4.6992 37 1 5.1401 -6.0228 -5.1836 38 1 6.1688 -7.3794 -4.6650 39 1 5.5921 -6.1925 -3.4702 40 1 8.5393 -5.0621 -6.3585 41 1 7.8896 -6.7194 -6.3514 42 1 6.8612 -5.3627 -6.8701 43 1 7.9476 -5.7704 -2.7520 44 1 8.5248 -6.9574 -3.9467 45 1 9.1737 -5.3001 -3.9536 46 1 2.4538 -2.7362 1.0388 47 1 1.5487 -2.2667 2.4978 48 1 0.7273 -2.3203 0.9196 49 1 4.4259 -2.5161 3.3494 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725184896.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:18 Heat of formation + Delta-G solvation = 13.045700 kcal Electronic energy + Delta-G solvation = -27738.240980 eV Core-core repulsion = 24020.482864 eV Total energy + Delta-G solvation = -3717.758116 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.19960 -38.85689 -36.97555 -36.51682 -33.60166 -32.14570 -31.39651 -29.33209 -28.11538 -27.62468 -27.38108 -26.03396 -25.59394 -24.62318 -23.01330 -20.65459 -19.60345 -19.29744 -19.12123 -17.43704 -16.93363 -16.53144 -15.83498 -15.41286 -15.21249 -14.84978 -14.59152 -14.25662 -13.98768 -13.85200 -13.77481 -13.18994 -13.05072 -12.88182 -12.58349 -12.54871 -12.31684 -12.28883 -12.10818 -11.83915 -11.81771 -11.60642 -11.50939 -11.21058 -11.17997 -11.07627 -11.03700 -10.81636 -10.69765 -10.40747 -10.27873 -9.86632 -9.78859 -9.48642 -9.40595 -9.25466 -8.62205 -8.59001 -8.32129 -6.82787 -5.76709 -3.23896 0.82082 1.43884 1.80906 2.86449 3.20788 3.33264 3.42040 3.42945 3.83624 4.06327 4.43725 4.58148 4.71429 4.80630 5.07203 5.23474 5.33293 5.36089 5.36679 5.38719 5.43478 5.49415 5.57902 5.61627 5.64238 5.66036 5.75278 5.77185 5.88748 5.95004 5.97554 6.09830 6.13309 6.15966 6.19060 6.30343 6.38426 6.40859 6.69978 6.81606 6.91184 7.17973 7.40029 7.72446 7.79131 7.89637 8.25053 8.33719 8.85748 9.18413 9.81815 10.31399 11.26253 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.002837 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.352893 B = 9866.749421 C =10619.329755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 H 0.068 0.932 4 C 0.110 3.890 5 N -0.700 5.700 6 C 0.516 3.484 7 O -0.557 6.557 8 C -0.071 4.071 9 C 0.102 3.898 10 C -0.251 4.251 11 S 0.103 5.897 12 C 0.063 3.937 13 C 0.012 3.988 14 C -0.135 4.135 15 C -0.152 4.152 16 C -0.134 4.134 17 N -0.456 5.456 18 N -0.594 5.594 19 C 0.164 3.836 20 C -0.261 4.261 21 H 0.068 0.932 22 C 0.005 3.995 23 N -0.900 5.900 24 Si 0.901 3.099 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.291 1.291 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.415 0.585 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.173 0.827 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.029 0.971 47 H 0.042 0.958 48 H -0.002 1.002 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.342 -3.349 -16.331 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.050 3.950 3 H 0.086 0.914 4 C -0.017 4.017 5 N -0.351 5.351 6 C 0.301 3.699 7 O -0.436 6.436 8 C -0.114 4.114 9 C -0.030 4.030 10 C -0.390 4.390 11 S 0.359 5.641 12 C -0.216 4.216 13 C 0.008 3.992 14 C -0.194 4.194 15 C -0.210 4.210 16 C -0.193 4.193 17 N -0.169 5.169 18 N -0.317 5.317 19 C 0.019 3.981 20 C -0.390 4.390 21 H 0.086 0.914 22 C -0.194 4.194 23 N -0.544 5.544 24 Si 0.731 3.269 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.218 1.218 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.252 0.748 34 H 0.124 0.876 35 H 0.132 0.868 36 H 0.190 0.810 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.047 0.953 47 H 0.060 0.940 48 H 0.016 0.984 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.245 -4.062 -17.475 19.349 hybrid contribution 0.278 1.052 2.064 2.333 sum 7.523 -3.011 -15.412 17.412 Atomic orbital electron populations 1.22172 0.97578 1.01438 1.00600 1.20636 0.92563 0.95843 0.86008 0.91391 1.21906 0.80146 1.00859 0.98765 1.45798 1.08070 1.58156 1.23042 1.20174 0.89016 0.77998 0.82681 1.90649 1.70292 1.48484 1.34193 1.20197 0.93591 1.01489 0.96098 1.19500 0.99810 0.88207 0.95487 1.26709 1.11418 1.04650 0.96198 1.83674 1.62189 1.00135 1.18062 1.26973 1.02519 1.00534 0.91607 1.19212 0.97290 0.86212 0.96522 1.21844 0.95705 0.98448 1.03361 1.22014 1.01681 1.02988 0.94337 1.21840 0.96798 1.00959 0.99669 1.65893 1.13677 1.11992 1.25322 1.43953 1.57841 1.09670 1.20258 1.20750 0.93980 0.84465 0.98889 1.19252 1.16768 0.90952 1.12041 0.91414 1.24990 0.98020 0.96098 1.00273 1.70101 1.39444 1.07292 1.37600 0.86252 0.78822 0.78849 0.82969 1.20438 1.21733 1.21773 0.93616 0.92978 0.92442 0.93063 0.92575 0.74842 0.87589 0.86767 0.80960 0.92482 0.91778 0.91197 0.91920 0.90815 0.91870 0.91222 0.91747 0.92612 0.95268 0.93950 0.98384 0.93765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.18 37.16 0.34 -2.30 16 2 C 0.16 3.03 2.87 -67.94 -0.19 2.83 16 3 H 0.07 1.28 7.86 -51.93 -0.41 0.87 16 4 C 0.11 2.07 4.97 -4.04 -0.02 2.05 16 5 N -0.70 -13.40 5.39 -60.30 -0.32 -13.72 16 6 C 0.52 9.84 7.82 -10.99 -0.09 9.75 16 7 O -0.56 -12.25 16.03 5.55 0.09 -12.16 16 8 C -0.07 -1.13 6.11 -29.04 -0.18 -1.31 16 9 C 0.10 1.63 5.23 -84.22 -0.44 1.19 16 10 C -0.25 -3.48 11.14 29.12 0.32 -3.15 16 11 S 0.10 1.23 21.57 -107.50 -2.32 -1.09 16 12 C 0.06 0.85 5.78 -13.46 -0.08 0.78 16 13 C 0.01 0.12 0.99 -155.66 -0.15 -0.03 16 14 C -0.13 -1.48 8.45 37.16 0.31 -1.16 16 15 C -0.15 -1.22 7.54 37.16 0.28 -0.94 16 16 C -0.13 -1.32 8.45 37.16 0.31 -1.00 16 17 N -0.46 -7.51 10.51 -8.06 -0.08 -7.60 16 18 N -0.59 -13.71 2.29 -173.49 -0.40 -14.11 16 19 C 0.16 3.93 8.10 59.85 0.49 4.42 16 20 C -0.26 -6.56 9.33 -15.06 -0.14 -6.70 16 21 H 0.07 1.68 7.81 -52.48 -0.41 1.27 16 22 C 0.01 0.14 5.10 -17.43 -0.09 0.05 16 23 N -0.90 -24.68 10.64 55.49 0.59 -24.09 16 24 Si 0.90 20.78 29.57 -169.99 -5.03 15.75 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.89 6.66 -51.93 -0.35 0.54 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.16 7.84 -51.93 -0.41 0.75 16 33 H 0.41 8.24 7.89 -40.82 -0.32 7.92 16 34 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.11 1.90 8.14 -51.93 -0.42 1.48 16 36 H 0.17 2.01 8.06 -52.49 -0.42 1.59 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.47 7.92 -51.93 -0.41 0.06 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.51 7.92 -51.93 -0.41 0.10 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.03 0.77 7.42 -51.93 -0.39 0.39 16 47 H 0.04 1.10 7.20 -51.93 -0.37 0.73 16 48 H 0.00 -0.05 6.43 -51.93 -0.33 -0.38 16 49 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 407.43 15.07 6.14 6.14 Total: -1.00 -30.66 407.43 -9.10 -39.76 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -8.44 Total: 6.65 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 0.68 Total: 4.47 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -0.22 Total: -59.52 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.32 Total: -1.09 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.66 -9.10 -39.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725184896.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.806 kcal (2) G-P(sol) polarization free energy of solvation -30.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds