Wall clock time and date at job start Tue Mar 31 2020 22:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47197 * 2 1 4 4 C 1.52996 * 109.47045 * 240.00139 * 2 1 3 5 5 N 1.46499 * 109.47222 * 184.99784 * 4 2 1 6 6 C 1.34780 * 120.00474 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99211 * 0.02562 * 6 5 4 8 8 C 1.50693 * 120.00143 * 179.72528 * 6 5 4 9 9 C 1.50707 * 109.47012 * 180.27513 * 8 6 5 10 10 C 1.33641 * 122.74685 * 85.02694 * 9 8 6 11 11 S 1.76199 * 107.92276 * 180.02562 * 10 9 8 12 12 C 1.70974 * 90.28352 * 0.02562 * 11 10 9 13 13 C 1.50696 * 124.91763 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.47186 * 239.97456 * 13 12 11 15 15 C 1.53001 * 109.47239 * 359.97127 * 13 12 11 16 16 C 1.53001 * 109.47697 * 119.97345 * 13 12 11 17 17 N 1.29024 * 110.16520 * 359.73206 * 12 11 10 18 18 N 1.46494 * 109.47303 * 120.00164 * 2 1 3 19 19 C 1.46504 * 120.00186 * 59.99558 * 18 2 1 20 20 C 1.36939 * 120.00317 * 240.00364 * 18 2 1 21 21 H 1.08003 * 119.99665 * 21.92928 * 20 18 2 22 22 C 1.38814 * 120.00004 * 201.93985 * 20 18 2 23 23 N 1.31617 * 120.00012 * 12.70555 * 22 20 18 24 24 Si 1.86803 * 119.99754 * 192.71154 * 22 20 18 25 25 H 1.48502 * 109.47044 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47355 * 119.99885 * 24 22 20 27 27 H 1.48500 * 109.46810 * 239.99666 * 24 22 20 28 28 H 1.09000 * 109.47043 * 59.99650 * 1 2 3 29 29 H 1.08996 * 109.47197 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47022 * 300.00050 * 1 2 3 31 31 H 1.09007 * 109.47337 * 65.00066 * 4 2 1 32 32 H 1.08999 * 109.47588 * 304.99856 * 4 2 1 33 33 H 0.97004 * 119.99834 * 0.02562 * 5 4 2 34 34 H 1.08998 * 109.47463 * 300.27199 * 8 6 5 35 35 H 1.09000 * 109.47001 * 60.28227 * 8 6 5 36 36 H 1.07998 * 126.03831 * 0.02562 * 10 9 8 37 37 H 1.09006 * 109.46796 * 59.99667 * 14 13 12 38 38 H 1.08997 * 109.47190 * 179.97438 * 14 13 12 39 39 H 1.09001 * 109.46884 * 299.99689 * 14 13 12 40 40 H 1.09006 * 109.47287 * 60.00016 * 15 13 12 41 41 H 1.08997 * 109.47645 * 180.02562 * 15 13 12 42 42 H 1.09006 * 109.47224 * 300.00628 * 15 13 12 43 43 H 1.09005 * 109.46641 * 59.99826 * 16 13 12 44 44 H 1.08997 * 109.47286 * 180.02562 * 16 13 12 45 45 H 1.09003 * 109.46599 * 300.00611 * 16 13 12 46 46 H 1.09004 * 109.46664 * 94.30962 * 19 18 2 47 47 H 1.08994 * 109.47307 * 214.31418 * 19 18 2 48 48 H 1.09000 * 109.47061 * 334.32195 * 19 18 2 49 49 H 0.97009 * 119.99753 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2492 5 7 3.5000 -0.8263 -1.1906 6 6 4.1730 -1.4291 -2.1908 7 8 3.5698 -1.8841 -3.1395 8 6 5.6753 -1.5317 -2.1334 9 6 6.1781 -2.2378 -3.3662 10 6 6.4150 -1.6019 -4.5175 11 16 6.9842 -2.7910 -5.6865 12 6 6.8463 -4.0251 -4.5112 13 6 7.1769 -5.4771 -4.7421 14 6 5.9298 -6.3292 -4.4975 15 6 7.6509 -5.6691 -6.1841 16 6 8.2854 -5.9073 -3.7793 17 7 6.4240 -3.5321 -3.3961 18 7 2.0183 -0.6906 1.1961 19 6 1.6644 -2.0932 1.4280 20 6 2.8055 -0.0252 2.0976 21 1 2.7847 1.0539 2.1394 22 6 3.6304 -0.7374 2.9573 23 7 3.8497 -2.0183 2.7484 24 14 4.4290 0.1220 4.4110 25 1 4.0260 1.5512 4.4236 26 1 3.9902 -0.5276 5.6722 27 1 5.9061 0.0256 4.2925 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7516 -0.1582 -2.1370 32 1 1.6054 -1.7198 -1.2952 33 1 3.9823 -0.4627 -0.4316 34 1 6.1063 -0.5316 -2.0863 35 1 5.9674 -2.0954 -1.2473 36 1 6.2812 -0.5458 -4.6992 37 1 5.1401 -6.0228 -5.1836 38 1 6.1688 -7.3794 -4.6650 39 1 5.5921 -6.1925 -3.4702 40 1 8.5393 -5.0621 -6.3585 41 1 7.8896 -6.7194 -6.3514 42 1 6.8612 -5.3627 -6.8701 43 1 7.9476 -5.7704 -2.7520 44 1 8.5248 -6.9574 -3.9467 45 1 9.1737 -5.3001 -3.9536 46 1 2.4538 -2.7362 1.0388 47 1 1.5487 -2.2667 2.4978 48 1 0.7273 -2.3203 0.9196 49 1 4.4259 -2.5161 3.3494 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725184896.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:17 Heat of formation + Delta-G solvation = -5.217076 kcal Electronic energy + Delta-G solvation = -27739.032913 eV Core-core repulsion = 24020.482864 eV Total energy + Delta-G solvation = -3718.550049 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.37819 -40.27363 -38.41352 -37.66770 -35.33340 -33.82708 -32.66798 -31.08744 -29.30843 -28.32862 -28.20899 -28.00731 -26.92779 -25.74942 -24.85571 -21.88722 -21.11317 -20.56559 -20.26412 -18.83109 -18.50105 -18.00569 -17.21446 -16.91534 -16.63250 -16.18867 -15.83496 -15.67303 -15.11387 -15.06705 -14.88856 -14.68850 -14.46747 -14.20636 -14.08352 -13.91229 -13.65330 -13.39148 -13.16180 -13.09867 -12.92735 -12.84348 -12.63871 -12.60640 -12.48206 -12.43626 -12.28074 -12.22529 -12.04741 -11.98573 -11.90400 -11.73268 -11.47552 -10.94678 -10.60370 -10.52121 -10.29553 -9.90827 -9.65598 -8.77132 -7.75952 -5.24396 -0.22069 0.45532 0.76585 1.48878 1.53134 1.60827 1.66507 1.73416 2.50297 2.55888 3.02477 3.37965 3.65313 3.66564 3.89206 3.94319 3.97081 4.06708 4.17513 4.23740 4.38052 4.40905 4.46682 4.61676 4.65911 4.70917 4.71957 4.79172 4.81439 4.82538 4.84560 4.94335 4.94826 4.97707 5.08090 5.10145 5.25519 5.27452 5.30445 5.33251 5.40122 5.47806 5.63400 5.71687 5.75455 6.36459 6.68749 6.85252 7.19214 7.31543 7.90875 8.36836 9.25751 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.002837 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.352893 B = 9866.749421 C =10619.329755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.157 3.843 3 H 0.077 0.923 4 C 0.116 3.884 5 N -0.701 5.701 6 C 0.515 3.485 7 O -0.588 6.588 8 C -0.064 4.064 9 C 0.072 3.928 10 C -0.260 4.260 11 S 0.165 5.835 12 C 0.046 3.954 13 C 0.007 3.993 14 C -0.132 4.132 15 C -0.148 4.148 16 C -0.130 4.130 17 N -0.497 5.497 18 N -0.602 5.602 19 C 0.183 3.817 20 C -0.256 4.256 21 H 0.076 0.924 22 C -0.044 4.044 23 N -0.930 5.930 24 Si 0.960 3.040 25 H -0.267 1.267 26 H -0.302 1.302 27 H -0.294 1.294 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.034 0.966 33 H 0.411 0.589 34 H 0.137 0.863 35 H 0.099 0.901 36 H 0.192 0.808 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.062 0.938 43 H 0.041 0.959 44 H 0.088 0.912 45 H 0.060 0.940 46 H -0.003 1.003 47 H 0.015 0.985 48 H 0.020 0.980 49 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.889 -2.307 -18.243 20.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.050 3.950 3 H 0.095 0.905 4 C -0.010 4.010 5 N -0.351 5.351 6 C 0.302 3.698 7 O -0.469 6.469 8 C -0.106 4.106 9 C -0.060 4.060 10 C -0.399 4.399 11 S 0.421 5.579 12 C -0.232 4.232 13 C 0.003 3.997 14 C -0.191 4.191 15 C -0.206 4.206 16 C -0.188 4.188 17 N -0.212 5.212 18 N -0.325 5.325 19 C 0.038 3.962 20 C -0.386 4.386 21 H 0.094 0.906 22 C -0.240 4.240 23 N -0.577 5.577 24 Si 0.790 3.210 25 H -0.191 1.191 26 H -0.229 1.229 27 H -0.222 1.222 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.248 0.752 34 H 0.155 0.845 35 H 0.117 0.883 36 H 0.210 0.790 37 H 0.068 0.932 38 H 0.110 0.890 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.081 0.919 43 H 0.061 0.939 44 H 0.107 0.893 45 H 0.079 0.921 46 H 0.015 0.985 47 H 0.034 0.966 48 H 0.039 0.961 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.777 -2.984 -19.409 21.121 hybrid contribution 0.067 0.730 2.566 2.668 sum 7.844 -2.254 -16.843 18.716 Atomic orbital electron populations 1.22065 0.95206 1.01516 1.02089 1.20838 0.94186 0.95647 0.84319 0.90483 1.21836 0.80028 0.99793 0.99355 1.45870 1.08248 1.58110 1.22882 1.20681 0.90274 0.76942 0.81915 1.90617 1.71237 1.49710 1.35381 1.20157 0.91344 1.03118 0.95973 1.19567 1.01603 0.88607 0.96202 1.27067 1.10386 1.06166 0.96275 1.83353 1.60570 0.98018 1.15917 1.27588 1.01678 1.02310 0.91624 1.19428 0.97229 0.84489 0.98566 1.21821 0.95831 1.00309 1.01111 1.22017 1.01843 1.04786 0.91967 1.21809 0.96525 1.02617 0.97897 1.65897 1.15363 1.12615 1.27302 1.44088 1.57680 1.09231 1.21528 1.20390 0.93863 0.84892 0.97060 1.19546 1.15881 0.91346 1.11872 0.90641 1.25623 0.99155 0.96610 1.02586 1.70268 1.40512 1.08600 1.38292 0.85316 0.77566 0.78397 0.79754 1.19089 1.22912 1.22171 0.90455 0.93592 0.92618 0.91218 0.94750 0.75248 0.84482 0.88263 0.79049 0.93236 0.89022 0.94350 0.91105 0.88485 0.91860 0.93939 0.89276 0.92138 0.98467 0.96621 0.96134 0.94653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.66 9.18 71.98 0.66 -4.00 16 2 C 0.16 5.80 2.87 44.99 0.13 5.93 16 3 H 0.08 2.73 7.86 -2.39 -0.02 2.71 16 4 C 0.12 4.31 4.97 86.38 0.43 4.74 16 5 N -0.70 -26.99 5.39 -463.06 -2.49 -29.49 16 6 C 0.52 19.93 7.82 87.65 0.69 20.62 16 7 O -0.59 -26.23 16.03 -3.04 -0.05 -26.28 16 8 C -0.06 -2.07 6.11 29.10 0.18 -1.89 16 9 C 0.07 2.33 5.23 41.53 0.22 2.55 16 10 C -0.26 -6.94 11.14 66.78 0.74 -6.20 16 11 S 0.16 3.64 21.57 -56.49 -1.22 2.43 16 12 C 0.05 1.24 5.78 88.52 0.51 1.76 16 13 C 0.01 0.14 0.99 -52.93 -0.05 0.09 16 14 C -0.13 -2.87 8.45 71.98 0.61 -2.27 16 15 C -0.15 -1.99 7.54 71.98 0.54 -1.44 16 16 C -0.13 -2.45 8.45 71.98 0.61 -1.85 16 17 N -0.50 -16.87 10.51 -179.40 -1.89 -18.76 16 18 N -0.60 -27.68 2.29 -702.80 -1.61 -29.29 16 19 C 0.18 8.98 8.10 127.77 1.04 10.02 16 20 C -0.26 -12.79 9.33 84.03 0.78 -12.01 16 21 H 0.08 3.62 7.81 -2.91 -0.02 3.60 16 22 C -0.04 -2.30 5.10 84.86 0.43 -1.87 16 23 N -0.93 -52.51 10.64 21.65 0.23 -52.28 16 24 Si 0.96 43.02 29.57 68.60 2.03 45.05 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 27 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.04 1.48 6.66 -2.39 -0.02 1.46 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 32 H 0.03 1.43 7.84 -2.39 -0.02 1.41 16 33 H 0.41 16.47 7.89 -92.71 -0.73 15.74 16 34 H 0.14 3.42 8.14 -2.39 -0.02 3.40 16 35 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 36 H 0.19 4.13 8.06 -2.91 -0.02 4.10 16 37 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 0.84 7.92 -2.38 -0.02 0.83 16 41 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.06 0.86 7.92 -2.38 -0.02 0.84 16 43 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 46 H 0.00 -0.17 7.42 -2.38 -0.02 -0.18 16 47 H 0.01 0.82 7.20 -2.39 -0.02 0.80 16 48 H 0.02 0.89 6.43 -2.39 -0.02 0.87 16 49 H 0.24 13.68 8.31 -92.70 -0.77 12.91 16 Total: -1.00 -67.96 407.43 2.72 -65.24 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.20 Total: 29.20 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 7.51 Total: 14.18 kcal Atomic # 7 Polarization: -124.05 SS G_CDS: -5.76 Total: -129.81 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.05 Total: -26.28 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -1.22 Total: 2.43 kcal Total: -67.96 2.72 -65.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725184896.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.027 kcal (2) G-P(sol) polarization free energy of solvation -67.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds