Wall clock time and date at job start Tue Mar 31 2020 22:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47273 * 2 1 4 4 C 1.52995 * 109.47092 * 119.99709 * 2 1 3 5 5 N 1.46499 * 109.47414 * 174.99737 * 4 2 1 6 6 C 1.34774 * 120.00274 * 179.97438 * 5 4 2 7 7 O 1.21282 * 120.00109 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99799 * 180.02562 * 6 5 4 9 9 C 1.50707 * 109.46721 * 180.02562 * 8 6 5 10 10 C 1.33639 * 122.74810 * 85.02489 * 9 8 6 11 11 S 1.76207 * 107.91849 * 179.97438 * 10 9 8 12 12 C 1.70974 * 90.28417 * 0.02562 * 11 10 9 13 13 C 1.50701 * 124.91430 * 179.97438 * 12 11 10 14 14 C 1.53005 * 109.46883 * 239.97307 * 13 12 11 15 15 C 1.52995 * 109.47180 * 359.97365 * 13 12 11 16 16 C 1.53001 * 109.47075 * 119.97603 * 13 12 11 17 17 N 1.29029 * 110.16834 * 359.73001 * 12 11 10 18 18 N 1.46504 * 109.47236 * 240.00060 * 2 1 3 19 19 C 1.46499 * 119.99835 * 300.00027 * 18 2 1 20 20 C 1.36936 * 120.00273 * 120.00071 * 18 2 1 21 21 H 1.08002 * 119.99706 * 20.37348 * 20 18 2 22 22 C 1.38810 * 119.99952 * 200.37975 * 20 18 2 23 23 N 1.31618 * 120.00376 * 14.98109 * 22 20 18 24 24 Si 1.86802 * 119.99628 * 194.99104 * 22 20 18 25 25 H 1.48500 * 109.47371 * 84.99968 * 24 22 20 26 26 H 1.48503 * 109.46652 * 204.99704 * 24 22 20 27 27 H 1.48497 * 109.47366 * 324.99457 * 24 22 20 28 28 H 1.08996 * 109.47133 * 300.00594 * 1 2 3 29 29 H 1.09000 * 109.47273 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46824 * 60.00273 * 1 2 3 31 31 H 1.08997 * 109.47221 * 295.00185 * 4 2 1 32 32 H 1.09002 * 109.46689 * 54.99956 * 4 2 1 33 33 H 0.97000 * 119.99502 * 0.02562 * 5 4 2 34 34 H 1.09000 * 109.47114 * 299.99634 * 8 6 5 35 35 H 1.08992 * 109.47496 * 60.00488 * 8 6 5 36 36 H 1.07991 * 126.04411 * 0.02562 * 10 9 8 37 37 H 1.08997 * 109.47308 * 60.00301 * 14 13 12 38 38 H 1.08998 * 109.46737 * 179.97438 * 14 13 12 39 39 H 1.08995 * 109.47232 * 300.00199 * 14 13 12 40 40 H 1.09005 * 109.47272 * 59.99913 * 15 13 12 41 41 H 1.08998 * 109.47300 * 179.97438 * 15 13 12 42 42 H 1.09005 * 109.47440 * 299.99997 * 15 13 12 43 43 H 1.08995 * 109.47169 * 59.99722 * 16 13 12 44 44 H 1.08998 * 109.47101 * 180.02562 * 16 13 12 45 45 H 1.09005 * 109.46805 * 299.99738 * 16 13 12 46 46 H 1.09002 * 109.47477 * 95.10420 * 19 18 2 47 47 H 1.08994 * 109.47352 * 215.10938 * 19 18 2 48 48 H 1.09004 * 109.46903 * 335.11171 * 19 18 2 49 49 H 0.96995 * 120.00626 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.1731 -1.4282 2.1912 7 8 3.5700 -1.8831 3.1400 8 6 5.6750 -1.5359 2.1311 9 6 6.1773 -2.2464 3.3616 10 6 6.2350 -3.5783 3.4544 11 16 6.8769 -3.9837 5.0445 12 6 7.0031 -2.3219 5.4266 13 6 7.5159 -1.7739 6.7334 14 6 6.4231 -0.9345 7.3983 15 6 7.9017 -2.9319 7.6558 16 6 8.7435 -0.8987 6.4727 17 7 6.6004 -1.6050 4.4322 18 7 2.0184 -0.6906 -1.1962 19 6 1.6645 -2.0932 -1.4280 20 6 2.8057 -0.0252 -2.0976 21 1 3.3356 0.8666 -1.7968 22 6 2.9226 -0.4966 -3.3979 23 7 2.0696 -1.3896 -3.8534 24 14 4.2907 0.1361 -4.5013 25 1 5.5271 -0.6494 -4.2567 26 1 3.8863 -0.0074 -5.9229 27 1 4.5464 1.5678 -4.2014 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 1.7516 -0.1582 2.1369 32 1 1.6053 -1.7197 1.2951 33 1 3.9824 -0.4622 0.4319 34 1 5.9636 -2.0990 1.2436 35 1 6.1093 -0.5373 2.0850 36 1 5.9411 -4.2819 2.6897 37 1 5.5485 -1.5579 7.5841 38 1 6.7939 -0.5384 8.3437 39 1 6.1482 -0.1095 6.7412 40 1 8.6803 -3.5299 7.1821 41 1 8.2731 -2.5355 8.6008 42 1 7.0271 -3.5554 7.8416 43 1 8.4686 -0.0737 5.8155 44 1 9.1147 -0.5026 7.4179 45 1 9.5221 -1.4967 5.9990 46 1 0.7889 -2.1448 -2.0752 47 1 2.5001 -2.6046 -1.9057 48 1 1.4410 -2.5737 -0.4755 49 1 2.1515 -1.7193 -4.7619 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725184906.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:21 Heat of formation + Delta-G solvation = 12.778715 kcal Electronic energy + Delta-G solvation = -27441.498587 eV Core-core repulsion = 23723.728893 eV Total energy + Delta-G solvation = -3717.769693 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.31578 -39.00413 -37.06531 -36.57835 -33.73192 -32.18328 -31.47086 -29.36967 -28.22339 -27.72647 -27.50372 -26.04899 -25.66849 -24.70688 -23.04086 -20.78297 -19.74753 -19.38688 -19.17459 -17.54375 -16.97784 -16.64837 -15.93682 -15.50859 -15.31855 -14.95977 -14.67354 -14.35551 -14.00067 -13.96398 -13.91773 -13.28833 -13.17686 -12.84488 -12.69964 -12.62523 -12.44223 -12.37798 -12.16755 -11.95556 -11.81080 -11.63054 -11.44683 -11.34927 -11.29127 -11.17817 -11.06303 -10.84646 -10.76101 -10.42794 -10.29840 -9.90312 -9.80062 -9.61429 -9.54716 -9.34748 -8.70670 -8.60978 -8.48378 -6.85384 -5.77766 -3.22801 0.72952 1.34906 1.72669 2.73973 3.04082 3.33495 3.39962 3.41698 3.70659 3.91424 4.43199 4.46971 4.61001 4.68043 4.95709 5.13227 5.24205 5.28213 5.31400 5.33541 5.35354 5.39754 5.46749 5.50234 5.56109 5.60343 5.63371 5.66439 5.77441 5.78910 5.92241 5.99670 6.05647 6.11539 6.18454 6.19929 6.32944 6.43223 6.75162 6.83319 6.88916 7.05693 7.36333 7.68161 7.76286 7.76654 8.05948 8.32361 8.68077 9.17358 9.81236 10.30117 11.26696 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016434 B = 0.002495 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.362301 B =11220.458445 C =11803.322625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.158 3.842 3 H 0.068 0.932 4 C 0.109 3.891 5 N -0.705 5.705 6 C 0.514 3.486 7 O -0.551 6.551 8 C -0.071 4.071 9 C 0.096 3.904 10 C -0.247 4.247 11 S 0.111 5.889 12 C 0.060 3.940 13 C 0.012 3.988 14 C -0.134 4.134 15 C -0.153 4.153 16 C -0.133 4.133 17 N -0.459 5.459 18 N -0.594 5.594 19 C 0.165 3.835 20 C -0.261 4.261 21 H 0.070 0.930 22 C 0.004 3.996 23 N -0.903 5.903 24 Si 0.902 3.098 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.280 1.280 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.410 0.590 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.175 0.825 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.028 0.972 47 H 0.041 0.959 48 H -0.002 1.002 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.475 -2.597 20.088 23.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.086 0.914 4 C -0.017 4.017 5 N -0.356 5.356 6 C 0.299 3.701 7 O -0.430 6.430 8 C -0.113 4.113 9 C -0.036 4.036 10 C -0.385 4.385 11 S 0.367 5.633 12 C -0.219 4.219 13 C 0.008 3.992 14 C -0.193 4.193 15 C -0.211 4.211 16 C -0.192 4.192 17 N -0.172 5.172 18 N -0.317 5.317 19 C 0.021 3.979 20 C -0.390 4.390 21 H 0.088 0.912 22 C -0.195 4.195 23 N -0.548 5.548 24 Si 0.733 3.267 25 H -0.215 1.215 26 H -0.219 1.219 27 H -0.206 1.206 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.247 0.753 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.192 0.808 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.046 0.954 47 H 0.059 0.941 48 H 0.017 0.983 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.254 -3.392 21.109 24.161 hybrid contribution 0.376 0.743 -2.107 2.266 sum 11.630 -2.649 19.002 22.436 Atomic orbital electron populations 1.22191 0.97526 1.01355 1.00569 1.20613 0.92565 0.95523 0.86399 0.91370 1.21915 0.79617 1.01135 0.99060 1.45851 1.08298 1.58486 1.22995 1.20235 0.89010 0.78240 0.82652 1.90668 1.70223 1.48394 1.33684 1.20205 0.93519 1.02943 0.94661 1.19455 0.99924 0.89717 0.94468 1.26771 1.10646 0.99593 1.01537 1.83752 1.59328 1.10490 1.09707 1.26950 1.02945 0.92828 0.99215 1.19207 0.96375 0.95951 0.87676 1.21835 0.97262 0.99956 1.00228 1.22019 1.02129 0.97313 0.99650 1.21833 0.95617 0.99607 1.02142 1.65882 1.12915 1.38777 0.99656 1.44007 1.58241 1.08076 1.21375 1.20719 0.99759 0.83373 0.94077 1.19211 1.19836 1.09653 0.90324 0.91217 1.24972 0.98482 0.99557 0.96495 1.70090 1.35145 1.33470 1.16057 0.86312 0.81947 0.78461 0.80019 1.21466 1.21851 1.20568 0.93972 0.93188 0.92221 0.92637 0.92247 0.75325 0.87128 0.87263 0.80794 0.92440 0.91774 0.91367 0.91873 0.90787 0.91811 0.91377 0.91745 0.92567 0.95375 0.94053 0.98314 0.93728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.19 37.16 0.34 -2.44 16 2 C 0.16 3.02 2.87 -67.93 -0.19 2.83 16 3 H 0.07 1.30 7.85 -51.93 -0.41 0.89 16 4 C 0.11 1.95 4.93 -4.05 -0.02 1.93 16 5 N -0.71 -12.15 5.39 -60.30 -0.32 -12.47 16 6 C 0.51 8.83 7.82 -10.99 -0.09 8.75 16 7 O -0.55 -11.31 16.03 5.56 0.09 -11.22 16 8 C -0.07 -0.98 6.11 -29.03 -0.18 -1.16 16 9 C 0.10 1.40 5.23 -84.22 -0.44 0.96 16 10 C -0.25 -3.26 11.14 29.12 0.32 -2.94 16 11 S 0.11 1.23 21.57 -107.50 -2.32 -1.09 16 12 C 0.06 0.72 5.78 -13.45 -0.08 0.65 16 13 C 0.01 0.11 0.99 -155.66 -0.15 -0.05 16 14 C -0.13 -1.24 8.45 37.16 0.31 -0.93 16 15 C -0.15 -1.06 7.54 37.16 0.28 -0.78 16 16 C -0.13 -1.09 8.45 37.16 0.31 -0.77 16 17 N -0.46 -6.66 10.51 -8.05 -0.08 -6.74 16 18 N -0.59 -13.67 2.29 -173.48 -0.40 -14.06 16 19 C 0.17 3.92 8.00 59.85 0.48 4.40 16 20 C -0.26 -6.57 9.34 -15.06 -0.14 -6.72 16 21 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 22 C 0.00 0.10 5.06 -17.43 -0.09 0.01 16 23 N -0.90 -25.38 10.67 55.49 0.59 -24.79 16 24 Si 0.90 20.82 29.58 -169.99 -5.03 15.79 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.90 7.67 -51.93 -0.40 0.50 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.15 6.86 -51.93 -0.36 0.79 16 33 H 0.41 7.02 7.89 -40.82 -0.32 6.69 16 34 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.11 1.37 8.14 -51.93 -0.42 0.94 16 36 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.41 7.92 -51.93 -0.41 0.00 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.45 7.92 -51.93 -0.41 0.04 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.03 0.73 7.40 -51.93 -0.38 0.35 16 47 H 0.04 1.06 7.21 -51.93 -0.37 0.68 16 48 H 0.00 -0.04 6.53 -51.93 -0.34 -0.37 16 49 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 407.44 15.07 6.14 6.14 Total: -1.00 -31.18 407.44 -9.11 -40.28 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -8.45 Total: 4.42 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 0.67 Total: 3.74 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.21 Total: -58.07 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.32 Total: -1.09 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.18 -9.11 -40.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725184906.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.060 kcal (2) G-P(sol) polarization free energy of solvation -31.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds