Wall clock time and date at job start Tue Mar 31 2020 22:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47273 * 2 1 4 4 C 1.52995 * 109.47092 * 119.99709 * 2 1 3 5 5 N 1.46499 * 109.47414 * 174.99737 * 4 2 1 6 6 C 1.34774 * 120.00274 * 179.97438 * 5 4 2 7 7 O 1.21282 * 120.00109 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99799 * 180.02562 * 6 5 4 9 9 C 1.50707 * 109.46721 * 180.02562 * 8 6 5 10 10 C 1.33639 * 122.74810 * 85.02489 * 9 8 6 11 11 S 1.76207 * 107.91849 * 179.97438 * 10 9 8 12 12 C 1.70974 * 90.28417 * 0.02562 * 11 10 9 13 13 C 1.50701 * 124.91430 * 179.97438 * 12 11 10 14 14 C 1.53005 * 109.46883 * 239.97307 * 13 12 11 15 15 C 1.52995 * 109.47180 * 359.97365 * 13 12 11 16 16 C 1.53001 * 109.47075 * 119.97603 * 13 12 11 17 17 N 1.29029 * 110.16834 * 359.73001 * 12 11 10 18 18 N 1.46504 * 109.47236 * 240.00060 * 2 1 3 19 19 C 1.46499 * 119.99835 * 300.00027 * 18 2 1 20 20 C 1.36936 * 120.00273 * 120.00071 * 18 2 1 21 21 H 1.08002 * 119.99706 * 20.37348 * 20 18 2 22 22 C 1.38810 * 119.99952 * 200.37975 * 20 18 2 23 23 N 1.31618 * 120.00376 * 14.98109 * 22 20 18 24 24 Si 1.86802 * 119.99628 * 194.99104 * 22 20 18 25 25 H 1.48500 * 109.47371 * 84.99968 * 24 22 20 26 26 H 1.48503 * 109.46652 * 204.99704 * 24 22 20 27 27 H 1.48497 * 109.47366 * 324.99457 * 24 22 20 28 28 H 1.08996 * 109.47133 * 300.00594 * 1 2 3 29 29 H 1.09000 * 109.47273 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46824 * 60.00273 * 1 2 3 31 31 H 1.08997 * 109.47221 * 295.00185 * 4 2 1 32 32 H 1.09002 * 109.46689 * 54.99956 * 4 2 1 33 33 H 0.97000 * 119.99502 * 0.02562 * 5 4 2 34 34 H 1.09000 * 109.47114 * 299.99634 * 8 6 5 35 35 H 1.08992 * 109.47496 * 60.00488 * 8 6 5 36 36 H 1.07991 * 126.04411 * 0.02562 * 10 9 8 37 37 H 1.08997 * 109.47308 * 60.00301 * 14 13 12 38 38 H 1.08998 * 109.46737 * 179.97438 * 14 13 12 39 39 H 1.08995 * 109.47232 * 300.00199 * 14 13 12 40 40 H 1.09005 * 109.47272 * 59.99913 * 15 13 12 41 41 H 1.08998 * 109.47300 * 179.97438 * 15 13 12 42 42 H 1.09005 * 109.47440 * 299.99997 * 15 13 12 43 43 H 1.08995 * 109.47169 * 59.99722 * 16 13 12 44 44 H 1.08998 * 109.47101 * 180.02562 * 16 13 12 45 45 H 1.09005 * 109.46805 * 299.99738 * 16 13 12 46 46 H 1.09002 * 109.47477 * 95.10420 * 19 18 2 47 47 H 1.08994 * 109.47352 * 215.10938 * 19 18 2 48 48 H 1.09004 * 109.46903 * 335.11171 * 19 18 2 49 49 H 0.96995 * 120.00626 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.1731 -1.4282 2.1912 7 8 3.5700 -1.8831 3.1400 8 6 5.6750 -1.5359 2.1311 9 6 6.1773 -2.2464 3.3616 10 6 6.2350 -3.5783 3.4544 11 16 6.8769 -3.9837 5.0445 12 6 7.0031 -2.3219 5.4266 13 6 7.5159 -1.7739 6.7334 14 6 6.4231 -0.9345 7.3983 15 6 7.9017 -2.9319 7.6558 16 6 8.7435 -0.8987 6.4727 17 7 6.6004 -1.6050 4.4322 18 7 2.0184 -0.6906 -1.1962 19 6 1.6645 -2.0932 -1.4280 20 6 2.8057 -0.0252 -2.0976 21 1 3.3356 0.8666 -1.7968 22 6 2.9226 -0.4966 -3.3979 23 7 2.0696 -1.3896 -3.8534 24 14 4.2907 0.1361 -4.5013 25 1 5.5271 -0.6494 -4.2567 26 1 3.8863 -0.0074 -5.9229 27 1 4.5464 1.5678 -4.2014 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 1.7516 -0.1582 2.1369 32 1 1.6053 -1.7197 1.2951 33 1 3.9824 -0.4622 0.4319 34 1 5.9636 -2.0990 1.2436 35 1 6.1093 -0.5373 2.0850 36 1 5.9411 -4.2819 2.6897 37 1 5.5485 -1.5579 7.5841 38 1 6.7939 -0.5384 8.3437 39 1 6.1482 -0.1095 6.7412 40 1 8.6803 -3.5299 7.1821 41 1 8.2731 -2.5355 8.6008 42 1 7.0271 -3.5554 7.8416 43 1 8.4686 -0.0737 5.8155 44 1 9.1147 -0.5026 7.4179 45 1 9.5221 -1.4967 5.9990 46 1 0.7889 -2.1448 -2.0752 47 1 2.5001 -2.6046 -1.9057 48 1 1.4410 -2.5737 -0.4755 49 1 2.1515 -1.7193 -4.7619 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725184906.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:20 Heat of formation + Delta-G solvation = -5.727237 kcal Electronic energy + Delta-G solvation = -27442.301065 eV Core-core repulsion = 23723.728893 eV Total energy + Delta-G solvation = -3718.572172 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.38089 -40.29067 -38.42744 -37.65643 -35.38481 -33.80392 -32.64515 -31.13218 -29.32267 -28.31665 -28.17677 -28.01728 -26.94918 -25.74607 -24.87921 -21.90874 -21.13321 -20.57295 -20.26633 -18.86559 -18.47816 -17.99703 -17.15600 -17.08179 -16.55000 -16.20151 -15.83492 -15.68740 -15.12122 -15.08343 -14.89011 -14.62328 -14.51314 -14.24500 -14.07785 -13.93148 -13.69369 -13.26852 -13.08373 -13.06824 -12.92810 -12.84480 -12.65804 -12.61429 -12.53259 -12.42244 -12.27969 -12.20782 -12.08827 -11.96862 -11.88566 -11.76811 -11.51631 -10.95621 -10.59794 -10.55036 -10.29499 -9.94239 -9.66839 -8.79951 -7.77908 -5.23811 -0.22373 0.44499 0.77825 1.51520 1.52737 1.59907 1.67749 1.70304 2.47518 2.55239 3.00579 3.36731 3.63809 3.66243 3.89844 3.96195 3.98800 4.06257 4.15200 4.24598 4.36354 4.39092 4.49274 4.59527 4.67552 4.71156 4.74435 4.75097 4.79509 4.84282 4.91909 4.96401 4.97174 5.00023 5.03328 5.11753 5.22823 5.26984 5.36098 5.36646 5.41212 5.41758 5.60406 5.69492 5.75388 6.35148 6.66958 6.81016 7.18080 7.30904 7.90131 8.35377 9.25815 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016434 B = 0.002495 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.362301 B =11220.458445 C =11803.322625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.158 3.842 3 H 0.075 0.925 4 C 0.119 3.881 5 N -0.705 5.705 6 C 0.515 3.485 7 O -0.586 6.586 8 C -0.064 4.064 9 C 0.074 3.926 10 C -0.267 4.267 11 S 0.154 5.846 12 C 0.050 3.950 13 C 0.008 3.992 14 C -0.131 4.131 15 C -0.151 4.151 16 C -0.129 4.129 17 N -0.488 5.488 18 N -0.602 5.602 19 C 0.186 3.814 20 C -0.255 4.255 21 H 0.082 0.918 22 C -0.053 4.053 23 N -0.939 5.939 24 Si 0.964 3.036 25 H -0.285 1.285 26 H -0.306 1.306 27 H -0.268 1.268 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.412 0.588 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.183 0.817 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.060 0.940 43 H 0.048 0.952 44 H 0.088 0.912 45 H 0.057 0.943 46 H 0.000 1.000 47 H 0.016 0.984 48 H 0.018 0.982 49 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.082 -2.052 22.094 25.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.050 3.950 3 H 0.093 0.907 4 C -0.007 4.007 5 N -0.355 5.355 6 C 0.301 3.699 7 O -0.467 6.467 8 C -0.107 4.107 9 C -0.058 4.058 10 C -0.406 4.406 11 S 0.412 5.588 12 C -0.228 4.228 13 C 0.004 3.996 14 C -0.190 4.190 15 C -0.209 4.209 16 C -0.188 4.188 17 N -0.202 5.202 18 N -0.325 5.325 19 C 0.040 3.960 20 C -0.385 4.385 21 H 0.100 0.900 22 C -0.248 4.248 23 N -0.586 5.586 24 Si 0.793 3.207 25 H -0.212 1.212 26 H -0.233 1.233 27 H -0.192 1.192 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.249 0.751 34 H 0.147 0.853 35 H 0.140 0.860 36 H 0.200 0.800 37 H 0.065 0.935 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.115 0.885 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.106 0.894 45 H 0.076 0.924 46 H 0.018 0.982 47 H 0.034 0.966 48 H 0.036 0.964 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.874 -2.822 23.146 26.635 hybrid contribution -0.146 0.579 -2.603 2.671 sum 12.728 -2.243 20.543 24.270 Atomic orbital electron populations 1.22083 0.96229 1.01218 1.01362 1.20766 0.93503 0.95538 0.85164 0.90707 1.21721 0.80111 1.00209 0.98631 1.45865 1.08030 1.58487 1.23135 1.20753 0.90298 0.77078 0.81727 1.90646 1.71258 1.49838 1.34966 1.20200 0.90858 1.04075 0.95522 1.19609 1.00896 0.90336 0.94909 1.27055 1.10808 0.99639 1.03126 1.83514 1.58127 1.09316 1.07888 1.27610 1.01929 0.93561 0.99739 1.19428 0.96554 0.96942 0.86704 1.21815 0.97127 0.99057 1.00980 1.22033 1.02219 0.96463 1.00161 1.21806 0.95122 0.98820 1.03019 1.65909 1.14235 1.39763 1.00303 1.44148 1.58377 1.07937 1.22061 1.20367 0.97439 0.84092 0.94060 1.19595 1.19182 1.09315 0.90360 0.90008 1.25691 1.00601 1.00432 0.98096 1.70260 1.37041 1.35414 1.15925 0.85323 0.79392 0.78493 0.77446 1.21159 1.23284 1.19242 0.90640 0.93824 0.93891 0.91420 0.93672 0.75121 0.85316 0.86023 0.79985 0.93461 0.89109 0.93622 0.91348 0.88479 0.92077 0.93254 0.89354 0.92398 0.98194 0.96561 0.96397 0.94615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.11 9.19 71.98 0.66 -4.45 16 2 C 0.16 5.83 2.87 44.99 0.13 5.96 16 3 H 0.07 2.69 7.85 -2.39 -0.02 2.68 16 4 C 0.12 4.13 4.93 86.38 0.43 4.55 16 5 N -0.70 -23.56 5.39 -463.07 -2.49 -26.06 16 6 C 0.51 17.38 7.82 87.66 0.69 18.07 16 7 O -0.59 -23.94 16.03 -3.03 -0.05 -23.99 16 8 C -0.06 -1.73 6.11 29.10 0.18 -1.56 16 9 C 0.07 2.13 5.23 41.52 0.22 2.35 16 10 C -0.27 -6.89 11.14 66.78 0.74 -6.15 16 11 S 0.15 3.24 21.57 -56.49 -1.22 2.02 16 12 C 0.05 1.17 5.78 88.52 0.51 1.68 16 13 C 0.01 0.13 0.99 -52.93 -0.05 0.07 16 14 C -0.13 -2.26 8.45 71.98 0.61 -1.65 16 15 C -0.15 -1.70 7.54 71.98 0.54 -1.16 16 16 C -0.13 -1.88 8.45 71.98 0.61 -1.27 16 17 N -0.49 -13.99 10.51 -179.39 -1.89 -15.88 16 18 N -0.60 -27.46 2.29 -702.78 -1.61 -29.07 16 19 C 0.19 8.93 8.00 127.77 1.02 9.95 16 20 C -0.25 -12.65 9.34 84.03 0.79 -11.86 16 21 H 0.08 3.82 7.81 -2.91 -0.02 3.80 16 22 C -0.05 -2.81 5.06 84.86 0.43 -2.38 16 23 N -0.94 -53.91 10.67 21.65 0.23 -53.68 16 24 Si 0.96 42.85 29.58 68.60 2.03 44.88 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 26 H -0.31 -14.16 7.11 99.48 0.71 -13.46 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 28 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.04 1.53 7.67 -2.39 -0.02 1.51 16 30 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.04 1.70 6.86 -2.39 -0.02 1.69 16 33 H 0.41 13.58 7.89 -92.71 -0.73 12.85 16 34 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 35 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 36 H 0.18 4.17 8.06 -2.92 -0.02 4.15 16 37 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 0.71 7.92 -2.38 -0.02 0.69 16 41 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.06 0.73 7.92 -2.38 -0.02 0.71 16 43 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 44 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 46 H 0.00 -0.01 7.40 -2.39 -0.02 -0.03 16 47 H 0.02 0.83 7.21 -2.39 -0.02 0.81 16 48 H 0.02 0.77 6.53 -2.39 -0.02 0.75 16 49 H 0.24 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -67.61 407.44 2.70 -64.92 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 0.20 Total: 24.69 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 7.50 Total: 12.16 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -5.76 Total: -124.68 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.05 Total: -23.99 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.22 Total: 2.02 kcal Total: -67.61 2.70 -64.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725184906.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.189 kcal (2) G-P(sol) polarization free energy of solvation -67.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds