Wall clock time and date at job start Tue Mar 31 2020 22:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46769 * 2 1 4 4 C 1.53004 * 109.46705 * 240.00068 * 2 1 3 5 5 N 1.46903 * 109.46674 * 184.99895 * 4 2 1 6 6 C 1.46901 * 111.00253 * 293.95314 * 5 4 2 7 7 C 1.46900 * 110.99796 * 169.99868 * 5 4 2 8 8 C 1.50700 * 109.47459 * 190.00093 * 7 5 4 9 9 O 1.21298 * 119.99450 * 0.02562 * 8 7 5 10 10 N 1.34767 * 120.00365 * 180.02562 * 8 7 5 11 11 C 1.37094 * 120.00374 * 179.97438 * 10 8 7 12 12 H 1.08000 * 119.99554 * 0.02562 * 11 10 8 13 13 C 1.38952 * 120.00352 * 180.02562 * 11 10 8 14 14 N 1.31409 * 120.00051 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99857 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47028 * 89.99763 * 15 13 11 17 17 H 1.48498 * 109.47000 * 209.99425 * 15 13 11 18 18 H 1.48498 * 109.47287 * 329.99595 * 15 13 11 19 19 N 1.46494 * 109.47118 * 120.00496 * 2 1 3 20 20 C 1.34784 * 119.99635 * 274.99773 * 19 2 1 21 21 O 1.21279 * 119.99925 * 359.97438 * 20 19 2 22 22 C 1.50700 * 119.99961 * 180.02562 * 20 19 2 23 23 C 1.52992 * 109.47257 * 180.02562 * 22 20 19 24 24 N 1.46499 * 109.47267 * 179.97438 * 23 22 20 25 25 C 1.34603 * 126.43842 * 125.00093 * 24 23 22 26 26 N 1.31075 * 106.67787 * 180.02562 * 25 24 23 27 27 N 1.28839 * 107.99074 * 359.97438 * 26 25 24 28 28 N 1.28741 * 109.39943 * 359.73521 * 27 26 25 29 29 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47041 * 300.00119 * 1 2 3 31 31 H 1.09005 * 109.46855 * 59.99655 * 1 2 3 32 32 H 1.08995 * 109.47346 * 305.00057 * 4 2 1 33 33 H 1.09001 * 109.46950 * 65.00327 * 4 2 1 34 34 H 1.08996 * 109.46708 * 60.00260 * 6 5 4 35 35 H 1.08998 * 109.46702 * 179.97438 * 6 5 4 36 36 H 1.08996 * 109.47138 * 300.00348 * 6 5 4 37 37 H 1.09002 * 109.47290 * 310.00638 * 7 5 4 38 38 H 1.09000 * 109.46898 * 70.00020 * 7 5 4 39 39 H 0.97005 * 119.99987 * 0.02562 * 10 8 7 40 40 H 0.97003 * 120.00027 * 180.02562 * 14 13 11 41 41 H 0.96995 * 120.00292 * 95.27206 * 19 2 1 42 42 H 1.09004 * 109.46932 * 300.00223 * 22 20 19 43 43 H 1.08997 * 109.47392 * 59.99562 * 22 20 19 44 44 H 1.09004 * 109.47330 * 299.99977 * 23 22 20 45 45 H 1.09005 * 109.47124 * 59.99773 * 23 22 20 46 46 H 1.07994 * 126.65974 * 359.96460 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5040 -0.8267 -1.1905 6 6 4.1310 0.4993 -1.2721 7 6 4.0107 -1.7144 -2.2455 8 6 5.4724 -1.9938 -2.0080 9 8 6.0364 -1.5022 -1.0533 10 7 6.1528 -2.7899 -2.8562 11 6 7.4827 -3.0437 -2.6404 12 1 7.9849 -2.6059 -1.7904 13 6 8.1844 -3.8641 -3.5153 14 7 7.5732 -4.3972 -4.5492 15 14 9.9962 -4.2104 -3.2207 16 1 10.1372 -5.4181 -2.3681 17 1 10.6739 -4.4412 -4.5217 18 1 10.6179 -3.0473 -2.5381 19 7 2.0184 -0.6907 1.1961 20 6 2.1471 -0.0183 2.3571 21 8 1.8591 1.1585 2.4114 22 6 2.6500 -0.7286 3.5874 23 6 2.7008 0.2542 4.7588 24 7 3.1890 -0.4364 5.9549 25 6 4.2373 -0.0720 6.7166 26 7 4.3288 -0.9572 7.6789 27 7 3.3857 -1.8200 7.5170 28 7 2.6915 -1.5050 6.4796 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6053 -1.7198 -1.2952 33 1 1.7516 -0.1583 -2.1370 34 1 3.7911 1.1138 -0.4385 35 1 5.2148 0.3921 -1.2258 36 1 3.8524 0.9757 -2.2119 37 1 3.4544 -2.6517 -2.2300 38 1 3.8856 -1.2338 -3.2158 39 1 5.7018 -3.1828 -3.6199 40 1 8.0629 -4.9702 -5.1597 41 1 2.2528 -1.6308 1.1515 42 1 1.9778 -1.5510 3.8324 43 1 3.6492 -1.1205 3.3978 44 1 3.3727 1.0769 4.5140 45 1 1.7012 0.6457 4.9482 46 1 4.8789 0.7831 6.5639 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733059653.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:58 Heat of formation + Delta-G solvation = 26.770977 kcal Electronic energy + Delta-G solvation = -29058.600347 eV Core-core repulsion = 24827.436941 eV Total energy + Delta-G solvation = -4231.163407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.18106 -41.02416 -40.27636 -38.40890 -37.04603 -36.09272 -35.49400 -33.56832 -33.25752 -32.93421 -31.50204 -29.47573 -27.98483 -26.94819 -26.60313 -24.83152 -24.13842 -23.42228 -21.72251 -21.24360 -20.93919 -19.83387 -19.05848 -18.12462 -17.90061 -17.53432 -17.16742 -16.78731 -16.70627 -16.52197 -16.43735 -16.16106 -15.61218 -15.17191 -15.13823 -14.95069 -14.63517 -14.17354 -14.12847 -13.74274 -13.62733 -13.49082 -13.26316 -13.18543 -13.10727 -12.86770 -12.76760 -12.64246 -12.51234 -12.42427 -12.38096 -12.21551 -12.13005 -11.87591 -11.69822 -11.43953 -11.37001 -10.93107 -10.25572 -9.98049 -9.97510 -9.20902 -8.45651 -5.93437 0.26350 1.01264 1.21656 1.37785 1.42006 1.53612 1.63412 2.09227 2.26553 2.30114 2.76713 3.22143 3.24750 3.44510 3.47615 3.58739 3.77093 3.86573 3.87351 4.17454 4.24454 4.27498 4.35920 4.36588 4.44406 4.48634 4.54783 4.57700 4.60245 4.66928 4.73369 4.79218 4.82039 4.84913 5.06158 5.19946 5.23926 5.32917 5.42373 5.58118 5.88235 6.06870 6.19919 6.58994 6.62908 7.15462 7.25187 7.55209 7.60157 8.15961 8.71696 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.009076 B = 0.002536 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.155488 B =11039.263943 C =13543.934182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.149 3.851 3 H 0.070 0.930 4 C 0.045 3.955 5 N -0.527 5.527 6 C 0.030 3.970 7 C 0.057 3.943 8 C 0.442 3.558 9 O -0.613 6.613 10 N -0.577 5.577 11 C -0.328 4.328 12 H 0.078 0.922 13 C -0.013 4.013 14 N -0.921 5.921 15 Si 0.988 3.012 16 H -0.272 1.272 17 H -0.272 1.272 18 H -0.273 1.273 19 N -0.699 5.699 20 C 0.526 3.474 21 O -0.579 6.579 22 C -0.151 4.151 23 C 0.133 3.867 24 N -0.303 5.303 25 C 0.180 3.820 26 N -0.345 5.345 27 N -0.113 5.113 28 N -0.108 5.108 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.028 0.972 37 H 0.115 0.885 38 H 0.066 0.934 39 H 0.395 0.605 40 H 0.276 0.724 41 H 0.412 0.588 42 H 0.118 0.882 43 H 0.106 0.894 44 H 0.145 0.855 45 H 0.121 0.879 46 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.518 9.879 8.931 20.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.044 3.956 3 H 0.088 0.912 4 C -0.083 4.083 5 N -0.251 5.251 6 C -0.118 4.118 7 C -0.074 4.074 8 C 0.230 3.770 9 O -0.499 6.499 10 N -0.214 5.214 11 C -0.458 4.458 12 H 0.096 0.904 13 C -0.213 4.213 14 N -0.562 5.562 15 Si 0.812 3.188 16 H -0.198 1.198 17 H -0.197 1.197 18 H -0.198 1.198 19 N -0.349 5.349 20 C 0.312 3.688 21 O -0.460 6.460 22 C -0.192 4.192 23 C 0.013 3.987 24 N -0.105 5.105 25 C -0.118 4.118 26 N -0.194 5.194 27 N -0.107 5.107 28 N -0.095 5.095 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.133 0.867 38 H 0.084 0.916 39 H 0.229 0.771 40 H 0.086 0.914 41 H 0.248 0.752 42 H 0.136 0.864 43 H 0.124 0.876 44 H 0.163 0.837 45 H 0.139 0.861 46 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -15.558 9.546 10.579 21.097 hybrid contribution 1.035 0.180 -1.828 2.108 sum -14.523 9.726 8.751 19.548 Atomic orbital electron populations 1.22070 0.93257 1.03151 1.02721 1.20960 0.94526 0.96525 0.83583 0.91154 1.22601 0.86336 1.02542 0.96824 1.61512 1.05510 1.11488 1.46578 1.22356 1.00445 0.89301 0.99666 1.21757 0.92041 0.99433 0.94155 1.20820 0.89985 0.82158 0.84049 1.90468 1.71625 1.55111 1.32714 1.41949 1.09846 1.43861 1.25781 1.19609 0.86592 1.28538 1.11081 0.90390 1.25968 1.04154 0.96089 0.95039 1.69662 1.38805 1.33038 1.14737 0.84993 0.77347 0.78586 0.77837 1.19794 1.19734 1.19809 1.45830 1.65415 1.14866 1.08798 1.20271 0.76920 0.86636 0.84927 1.90704 1.52562 1.16901 1.85809 1.21815 1.05510 1.00021 0.91837 1.22180 1.04929 0.93919 0.77685 1.48956 1.21016 1.18018 1.22488 1.28665 0.92254 1.02706 0.88151 1.74938 1.18079 1.03389 1.22945 1.78624 1.02063 1.19925 1.10132 1.78780 1.21580 1.02080 1.07097 0.91004 0.93047 0.90270 0.88170 0.91857 0.91431 0.92809 0.95317 0.86716 0.91636 0.77082 0.91414 0.75230 0.86418 0.87593 0.83666 0.86123 0.70133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.48 71.98 0.68 -1.29 16 2 C 0.15 2.50 2.35 45.00 0.11 2.60 16 3 H 0.07 1.48 6.23 -2.39 -0.01 1.46 16 4 C 0.04 0.76 4.51 86.30 0.39 1.15 16 5 N -0.53 -13.76 4.22 -927.05 -3.92 -17.67 16 6 C 0.03 0.88 8.96 127.69 1.14 2.02 16 7 C 0.06 1.70 5.45 85.56 0.47 2.16 16 8 C 0.44 19.37 7.47 87.66 0.66 20.03 16 9 O -0.61 -31.39 13.91 -3.08 -0.04 -31.43 16 10 N -0.58 -28.04 5.29 -306.99 -1.62 -29.66 16 11 C -0.33 -18.01 9.68 84.04 0.81 -17.20 16 12 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 13 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 14 N -0.92 -48.53 13.05 21.66 0.28 -48.25 16 15 Si 0.99 42.09 29.55 68.60 2.03 44.12 16 16 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 17 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 N -0.70 -11.90 4.80 -442.53 -2.13 -14.02 16 20 C 0.53 9.37 7.79 87.66 0.68 10.05 16 21 O -0.58 -13.33 15.64 -3.03 -0.05 -13.37 16 22 C -0.15 -1.97 5.84 29.85 0.17 -1.80 16 23 C 0.13 1.41 5.77 86.38 0.50 1.91 16 24 N -0.30 -4.68 3.44 -351.82 -1.21 -5.89 16 25 C 0.18 2.53 12.79 180.27 2.31 4.84 16 26 N -0.35 -8.13 12.36 -60.29 -0.74 -8.88 16 27 N -0.11 -3.08 13.43 37.01 0.50 -2.59 16 28 N -0.11 -2.47 13.08 37.02 0.48 -1.99 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.10 1.36 7.93 -2.39 -0.02 1.34 16 33 H 0.06 0.94 8.12 -2.39 -0.02 0.92 16 34 H 0.07 1.81 6.58 -2.39 -0.02 1.79 16 35 H 0.05 2.03 5.82 -2.39 -0.01 2.01 16 36 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.11 2.83 7.93 -2.39 -0.02 2.82 16 38 H 0.07 1.76 8.12 -2.39 -0.02 1.74 16 39 H 0.40 18.27 7.90 -92.70 -0.73 17.54 16 40 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 41 H 0.41 6.44 8.60 -92.71 -0.80 5.64 16 42 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 43 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.15 0.95 8.04 -2.38 -0.02 0.94 16 45 H 0.12 1.19 8.10 -2.38 -0.02 1.17 16 46 H 0.28 0.63 8.06 -2.91 -0.02 0.61 16 Total: -1.00 -77.40 391.46 1.47 -75.93 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: -0.50 Total: 29.44 kcal Atomic # 6 Polarization: 15.89 SS G_CDS: 8.39 Total: 24.27 kcal Atomic # 7 Polarization: -120.60 SS G_CDS: -8.35 Total: -128.95 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -0.09 Total: -44.81 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -77.40 1.47 -75.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733059653.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.699 kcal (2) G-P(sol) polarization free energy of solvation -77.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds